Wall clock time and date at job start Mon Mar 30 2020 00:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21277 * 119.99614 * 2 1 4 4 N 1.34773 * 120.00072 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.63307 * 5.23038 * 4 2 1 6 6 C 1.53191 * 108.77743 * 126.37092 * 5 4 2 7 7 C 1.53034 * 109.31337 * 54.63252 * 6 5 4 8 8 C 1.53043 * 109.54319 * 298.63730 * 7 6 5 9 9 C 1.46924 * 120.63083 * 185.20904 * 4 2 1 10 10 H 1.08994 * 109.70471 * 113.76960 * 9 4 2 11 11 C 1.53003 * 109.58738 * 353.41676 * 9 4 2 12 12 H 1.08997 * 109.87410 * 51.92456 * 11 9 4 13 13 C 1.54323 * 110.01047 * 290.82978 * 11 9 4 14 14 C 1.55157 * 102.94362 * 218.31757 * 13 11 9 15 15 C 1.54908 * 101.58097 * 35.49939 * 14 13 11 16 16 N 1.47018 * 109.88496 * 172.94251 * 11 9 4 17 17 C 1.36937 * 125.64920 * 298.49172 * 16 11 9 18 18 H 1.08000 * 119.99984 * 342.37722 * 17 16 11 19 19 C 1.38814 * 120.00078 * 162.37100 * 17 16 11 20 20 N 1.31617 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99974 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47206 * 60.00291 * 21 19 17 23 23 H 1.48504 * 109.46854 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47197 * 299.99976 * 21 19 17 25 25 H 1.08999 * 109.46770 * 185.42997 * 1 2 3 26 26 H 1.08997 * 109.47266 * 305.43069 * 1 2 3 27 27 H 1.08999 * 109.47317 * 65.43493 * 1 2 3 28 28 H 1.09004 * 109.58320 * 6.58389 * 5 4 2 29 29 H 1.08999 * 109.70290 * 246.22720 * 5 4 2 30 30 H 1.09004 * 109.49605 * 294.68601 * 6 5 4 31 31 H 1.09003 * 109.49986 * 174.59015 * 6 5 4 32 32 H 1.09000 * 109.46496 * 178.61182 * 7 6 5 33 33 H 1.09001 * 109.44926 * 58.64984 * 7 6 5 34 34 H 1.09000 * 109.49628 * 301.41693 * 8 7 6 35 35 H 1.08999 * 109.49776 * 181.31012 * 8 7 6 36 36 H 1.09008 * 110.72059 * 336.68176 * 13 11 9 37 37 H 1.09001 * 110.72271 * 99.77526 * 13 11 9 38 38 H 1.09002 * 111.00176 * 277.42822 * 14 13 11 39 39 H 1.08997 * 111.00644 * 153.57673 * 14 13 11 40 40 H 1.08998 * 110.36795 * 204.15536 * 15 14 13 41 41 H 1.09002 * 110.36444 * 81.83402 * 15 14 13 42 42 H 0.97004 * 119.99916 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4650 -2.4450 -0.1163 6 6 2.0649 -3.2428 -1.2784 7 6 3.5742 -3.3847 -1.0690 8 6 4.2211 -1.9979 -1.0505 9 6 3.6456 -1.1860 0.1142 10 1 3.9343 -1.6469 1.0588 11 6 4.1830 0.2454 0.0566 12 1 3.6612 0.8667 0.7844 13 6 3.9918 0.8246 -1.3610 14 6 5.2892 1.6475 -1.5781 15 6 6.3367 0.7770 -0.8400 16 7 5.6259 0.2495 0.3389 17 6 6.2123 -0.1672 1.5040 18 1 5.6197 -0.2668 2.4014 19 6 7.5686 -0.4617 1.5318 20 7 8.2909 -0.3399 0.4383 21 14 8.3684 -1.0308 3.1210 22 1 7.7196 -2.2851 3.5803 23 1 9.8137 -1.2789 2.8866 24 1 8.2079 0.0185 4.1594 25 1 -0.3633 -1.0231 0.0972 26 1 -0.3634 0.5957 0.8373 27 1 -0.3634 0.4272 -0.9346 28 1 0.4090 -2.2559 -0.3096 29 1 1.5715 -3.0111 0.8090 30 1 1.8753 -2.7191 -2.2154 31 1 1.6080 -4.2317 -1.3150 32 1 3.9999 -3.9731 -1.8818 33 1 3.7634 -3.8863 -0.1200 34 1 4.0111 -1.4859 -1.9895 35 1 5.2989 -2.1008 -0.9246 36 1 3.9148 0.0245 -2.0973 37 1 3.1128 1.4680 -1.3994 38 1 5.2078 2.6332 -1.1200 39 1 5.5269 1.7296 -2.6386 40 1 7.1855 1.3864 -0.5299 41 1 6.6691 -0.0404 -1.4798 42 1 9.2388 -0.5453 0.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025178710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:39 Heat of formation + Delta-G solvation = 23.116991 kcal Electronic energy + Delta-G solvation = -22425.743293 eV Core-core repulsion = 19407.760703 eV Total energy + Delta-G solvation = -3017.982590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40704 -37.19947 -36.64302 -32.80619 -32.37629 -31.32484 -29.27514 -29.01435 -26.83504 -24.58461 -24.19281 -22.68246 -20.88505 -19.98412 -19.59721 -18.04340 -17.13637 -15.81619 -15.54343 -15.27622 -14.76662 -14.49002 -14.10223 -13.80133 -13.69172 -13.48529 -13.02263 -12.77763 -12.35491 -12.17074 -11.92512 -11.65972 -11.42366 -11.15382 -11.04241 -10.88902 -10.75715 -10.56365 -10.46436 -10.21868 -10.00870 -9.90657 -9.55408 -9.42288 -9.33061 -8.59193 -8.38537 -7.93666 -6.53138 -5.64168 -2.98325 2.99314 3.38656 3.44639 3.49268 3.50257 4.58880 4.79512 4.86004 5.03783 5.12648 5.34772 5.46400 5.49169 5.50626 5.57208 5.61384 5.76630 5.86714 5.90956 5.98082 6.04009 6.11301 6.16436 6.21079 6.30098 6.44259 6.55768 6.63698 6.70403 6.82060 6.94418 7.05387 7.16336 7.19738 7.62573 7.69067 7.79113 7.88517 7.92495 8.41994 8.69105 9.33457 9.95987 10.69175 11.48242 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.007413 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.539794 B = 3776.024065 C = 4153.445288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.492 3.508 3 O -0.518 6.518 4 N -0.605 5.605 5 C 0.103 3.897 6 C -0.132 4.132 7 C -0.121 4.121 8 C -0.126 4.126 9 C 0.136 3.864 10 H 0.071 0.929 11 C 0.165 3.835 12 H 0.073 0.927 13 C -0.123 4.123 14 C -0.152 4.152 15 C 0.177 3.823 16 N -0.596 5.596 17 C -0.224 4.224 18 H 0.069 0.931 19 C -0.004 4.004 20 N -0.916 5.916 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.241 -4.828 -4.279 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.281 3.719 3 O -0.395 6.395 4 N -0.339 5.339 5 C -0.020 4.020 6 C -0.170 4.170 7 C -0.158 4.158 8 C -0.164 4.164 9 C 0.032 3.968 10 H 0.089 0.911 11 C 0.058 3.942 12 H 0.090 0.910 13 C -0.160 4.160 14 C -0.191 4.191 15 C 0.052 3.948 16 N -0.320 5.320 17 C -0.353 4.353 18 H 0.087 0.913 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.680 -4.316 -4.198 15.867 hybrid contribution 0.529 -0.696 0.811 1.192 sum -14.151 -5.012 -3.387 15.390 Atomic orbital electron populations 1.22049 0.93454 1.03777 1.04550 1.20600 0.89810 0.83913 0.77566 1.90721 1.68364 1.32109 1.48330 1.48342 1.08066 1.05230 1.72290 1.21791 0.96284 0.85261 0.98677 1.21899 0.97026 0.99595 0.98498 1.21548 0.94376 0.98329 1.01566 1.21992 1.01757 0.93833 0.98796 1.22141 0.75842 1.00886 0.97951 0.91110 1.21679 0.85420 0.90663 0.96418 0.90955 1.23046 0.97774 0.98959 0.96248 1.23016 0.98031 0.99228 0.98778 1.21307 0.92371 0.93880 0.87251 1.44694 1.00256 1.73516 1.13581 1.18894 0.92188 1.37306 0.86901 0.91321 1.24914 0.97072 1.01196 0.96883 1.69941 1.06342 1.54009 1.25990 0.86325 0.78366 0.78718 0.83118 1.21270 1.21710 1.21250 0.90572 0.89355 0.89486 0.89833 0.91779 0.91820 0.91447 0.92367 0.92150 0.91757 0.89514 0.92873 0.89885 0.92772 0.93249 0.92293 0.95901 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 10.02 36.01 0.36 -1.47 16 2 C 0.49 7.66 7.40 -10.98 -0.08 7.58 16 3 O -0.52 -10.09 9.96 5.56 0.06 -10.04 16 4 N -0.60 -9.31 2.95 -165.22 -0.49 -9.80 16 5 C 0.10 1.16 6.26 -3.71 -0.02 1.14 16 6 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 7 C -0.12 -1.71 5.88 -26.69 -0.16 -1.86 16 8 C -0.13 -2.29 4.96 -26.61 -0.13 -2.42 16 9 C 0.14 2.63 2.72 -67.60 -0.18 2.45 16 10 H 0.07 1.53 7.78 -51.93 -0.40 1.13 16 11 C 0.17 3.72 2.28 -66.95 -0.15 3.56 16 12 H 0.07 1.81 5.79 -52.37 -0.30 1.51 16 13 C -0.12 -2.54 5.18 -24.90 -0.13 -2.66 16 14 C -0.15 -3.27 7.09 -24.58 -0.17 -3.45 16 15 C 0.18 4.53 5.37 -2.53 -0.01 4.52 16 16 N -0.60 -15.64 2.84 -162.58 -0.46 -16.10 16 17 C -0.22 -6.34 9.65 -15.06 -0.15 -6.48 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C 0.00 -0.11 5.46 -17.43 -0.10 -0.20 16 20 N -0.92 -27.23 10.70 55.49 0.59 -26.63 16 21 Si 0.90 22.44 29.55 -169.99 -5.02 17.41 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H 0.08 0.60 5.30 -51.93 -0.28 0.32 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.70 5.24 -51.93 -0.27 0.43 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.17 5.48 -51.93 -0.28 0.89 16 35 H 0.09 1.91 8.02 -51.93 -0.42 1.50 16 36 H 0.05 1.05 5.12 -51.92 -0.27 0.78 16 37 H 0.08 1.72 5.61 -51.85 -0.29 1.43 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.67 7.15 -51.93 -0.37 1.30 16 41 H 0.02 0.62 7.99 -51.93 -0.41 0.21 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -31.53 308.56 -8.41 -39.94 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.65 Total: 1.50 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.09 Total: -0.94 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.36 Total: -52.53 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.06 Total: -10.04 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.53 -8.41 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025178710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.057 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds