Wall clock time and date at job start Mon Mar 30 2020 00:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21277 * 119.99614 * 2 1 4 4 N 1.34773 * 120.00072 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.63307 * 5.23038 * 4 2 1 6 6 C 1.53191 * 108.77743 * 126.37092 * 5 4 2 7 7 C 1.53034 * 109.31337 * 54.63252 * 6 5 4 8 8 C 1.53043 * 109.54319 * 298.63730 * 7 6 5 9 9 C 1.46924 * 120.63083 * 185.20904 * 4 2 1 10 10 H 1.08994 * 109.70471 * 113.76960 * 9 4 2 11 11 C 1.53003 * 109.58738 * 353.41676 * 9 4 2 12 12 H 1.08997 * 109.87410 * 51.92456 * 11 9 4 13 13 C 1.54323 * 110.01047 * 290.82978 * 11 9 4 14 14 C 1.55157 * 102.94362 * 218.31757 * 13 11 9 15 15 C 1.54908 * 101.58097 * 35.49939 * 14 13 11 16 16 N 1.47018 * 109.88496 * 172.94251 * 11 9 4 17 17 C 1.36937 * 125.64920 * 298.49172 * 16 11 9 18 18 H 1.08000 * 119.99984 * 342.37722 * 17 16 11 19 19 C 1.38814 * 120.00078 * 162.37100 * 17 16 11 20 20 N 1.31617 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99974 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47206 * 60.00291 * 21 19 17 23 23 H 1.48504 * 109.46854 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47197 * 299.99976 * 21 19 17 25 25 H 1.08999 * 109.46770 * 185.42997 * 1 2 3 26 26 H 1.08997 * 109.47266 * 305.43069 * 1 2 3 27 27 H 1.08999 * 109.47317 * 65.43493 * 1 2 3 28 28 H 1.09004 * 109.58320 * 6.58389 * 5 4 2 29 29 H 1.08999 * 109.70290 * 246.22720 * 5 4 2 30 30 H 1.09004 * 109.49605 * 294.68601 * 6 5 4 31 31 H 1.09003 * 109.49986 * 174.59015 * 6 5 4 32 32 H 1.09000 * 109.46496 * 178.61182 * 7 6 5 33 33 H 1.09001 * 109.44926 * 58.64984 * 7 6 5 34 34 H 1.09000 * 109.49628 * 301.41693 * 8 7 6 35 35 H 1.08999 * 109.49776 * 181.31012 * 8 7 6 36 36 H 1.09008 * 110.72059 * 336.68176 * 13 11 9 37 37 H 1.09001 * 110.72271 * 99.77526 * 13 11 9 38 38 H 1.09002 * 111.00176 * 277.42822 * 14 13 11 39 39 H 1.08997 * 111.00644 * 153.57673 * 14 13 11 40 40 H 1.08998 * 110.36795 * 204.15536 * 15 14 13 41 41 H 1.09002 * 110.36444 * 81.83402 * 15 14 13 42 42 H 0.97004 * 119.99916 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4650 -2.4450 -0.1163 6 6 2.0649 -3.2428 -1.2784 7 6 3.5742 -3.3847 -1.0690 8 6 4.2211 -1.9979 -1.0505 9 6 3.6456 -1.1860 0.1142 10 1 3.9343 -1.6469 1.0588 11 6 4.1830 0.2454 0.0566 12 1 3.6612 0.8667 0.7844 13 6 3.9918 0.8246 -1.3610 14 6 5.2892 1.6475 -1.5781 15 6 6.3367 0.7770 -0.8400 16 7 5.6259 0.2495 0.3389 17 6 6.2123 -0.1672 1.5040 18 1 5.6197 -0.2668 2.4014 19 6 7.5686 -0.4617 1.5318 20 7 8.2909 -0.3399 0.4383 21 14 8.3684 -1.0308 3.1210 22 1 7.7196 -2.2851 3.5803 23 1 9.8137 -1.2789 2.8866 24 1 8.2079 0.0185 4.1594 25 1 -0.3633 -1.0231 0.0972 26 1 -0.3634 0.5957 0.8373 27 1 -0.3634 0.4272 -0.9346 28 1 0.4090 -2.2559 -0.3096 29 1 1.5715 -3.0111 0.8090 30 1 1.8753 -2.7191 -2.2154 31 1 1.6080 -4.2317 -1.3150 32 1 3.9999 -3.9731 -1.8818 33 1 3.7634 -3.8863 -0.1200 34 1 4.0111 -1.4859 -1.9895 35 1 5.2989 -2.1008 -0.9246 36 1 3.9148 0.0245 -2.0973 37 1 3.1128 1.4680 -1.3994 38 1 5.2078 2.6332 -1.1200 39 1 5.5269 1.7296 -2.6386 40 1 7.1855 1.3864 -0.5299 41 1 6.6691 -0.0404 -1.4798 42 1 9.2388 -0.5453 0.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025178710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:38 Heat of formation + Delta-G solvation = 3.329459 kcal Electronic energy + Delta-G solvation = -22426.601345 eV Core-core repulsion = 19407.760703 eV Total energy + Delta-G solvation = -3018.840641 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77436 -38.80905 -38.03905 -34.61657 -33.85549 -32.76752 -31.19740 -30.11957 -28.45102 -26.52175 -25.59232 -24.13691 -22.30052 -21.63634 -21.24319 -19.37572 -18.98357 -17.48518 -16.90400 -16.60222 -16.41434 -16.24805 -15.65978 -15.19812 -14.96524 -14.88259 -14.38372 -14.03239 -13.93631 -13.65925 -13.37827 -13.16949 -12.87324 -12.86373 -12.62519 -12.58180 -12.48034 -12.07303 -11.95717 -11.90948 -11.65567 -11.53408 -11.30412 -11.16511 -10.98524 -10.65027 -9.94951 -9.32877 -8.63481 -7.84634 -5.21332 1.41869 1.45056 1.51530 1.80790 2.19000 2.50868 3.32396 3.73005 3.83779 3.93131 3.94628 4.08686 4.16013 4.22181 4.32160 4.40589 4.47279 4.50911 4.60182 4.72224 4.75900 4.82003 4.89142 4.91702 5.05228 5.06260 5.11371 5.19289 5.25496 5.29632 5.31679 5.36954 5.46759 5.54704 5.63150 5.70711 5.76273 5.91139 6.26780 6.71667 7.12964 7.44607 7.83973 8.54643 9.26783 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.007413 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.539794 B = 3776.024065 C = 4153.445288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.481 3.519 3 O -0.567 6.567 4 N -0.605 5.605 5 C 0.096 3.904 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.115 4.115 9 C 0.147 3.853 10 H 0.039 0.961 11 C 0.163 3.837 12 H 0.048 0.952 13 C -0.106 4.106 14 C -0.142 4.142 15 C 0.186 3.814 16 N -0.613 5.613 17 C -0.236 4.236 18 H 0.065 0.935 19 C -0.058 4.058 20 N -0.945 5.945 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.281 1.281 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.022 0.978 41 H -0.001 1.001 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.471 -6.276 -4.695 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.273 3.727 3 O -0.447 6.447 4 N -0.339 5.339 5 C -0.025 4.025 6 C -0.162 4.162 7 C -0.156 4.156 8 C -0.153 4.153 9 C 0.041 3.959 10 H 0.057 0.943 11 C 0.058 3.942 12 H 0.065 0.935 13 C -0.143 4.143 14 C -0.180 4.180 15 C 0.061 3.939 16 N -0.339 5.339 17 C -0.365 4.365 18 H 0.083 0.917 19 C -0.251 4.251 20 N -0.593 5.593 21 Si 0.799 3.201 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.207 1.207 25 H 0.126 0.874 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.040 0.960 41 H 0.017 0.983 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.978 -5.793 -4.615 19.444 hybrid contribution 1.487 -0.223 0.965 1.787 sum -16.491 -6.016 -3.650 17.930 Atomic orbital electron populations 1.22025 0.88360 1.06177 1.05781 1.21679 0.92164 0.82949 0.75923 1.90681 1.69878 1.33693 1.50477 1.48402 1.06161 1.07383 1.71972 1.22169 0.97970 0.83131 0.99218 1.21883 0.94109 1.01666 0.98494 1.21534 0.96983 0.95297 1.01753 1.21805 0.98938 0.96595 0.97989 1.21523 0.79145 0.98259 0.96931 0.94309 1.21679 0.83043 0.92566 0.96941 0.93500 1.22933 0.97294 0.98991 0.95073 1.22928 0.97078 0.98258 0.99781 1.21058 0.92516 0.93105 0.87226 1.44920 1.02037 1.73722 1.13212 1.19138 0.92634 1.37024 0.87731 0.91739 1.25685 0.97546 1.01707 1.00195 1.70141 1.06131 1.55046 1.27945 0.85282 0.77082 0.78479 0.79286 1.20155 1.21754 1.20736 0.87414 0.88660 0.87720 0.85630 0.91176 0.91357 0.87821 0.91331 0.92774 0.91730 0.94568 0.91852 0.89080 0.93049 0.90471 0.95991 0.98287 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.02 71.24 0.71 -1.94 16 2 C 0.48 13.99 7.40 87.66 0.65 14.64 16 3 O -0.57 -21.87 9.96 -3.02 -0.03 -21.90 16 4 N -0.61 -17.54 2.95 -795.02 -2.35 -19.89 16 5 C 0.10 1.77 6.26 86.36 0.54 2.31 16 6 C -0.12 -2.24 6.08 30.67 0.19 -2.05 16 7 C -0.12 -3.16 5.88 30.62 0.18 -2.98 16 8 C -0.12 -4.26 4.96 30.67 0.15 -4.11 16 9 C 0.15 5.81 2.72 44.98 0.12 5.93 16 10 H 0.04 1.76 7.78 -2.39 -0.02 1.74 16 11 C 0.16 7.62 2.28 45.34 0.10 7.73 16 12 H 0.05 2.47 5.79 -15.70 -0.09 2.38 16 13 C -0.11 -4.38 5.18 31.78 0.16 -4.22 16 14 C -0.14 -6.22 7.09 31.99 0.23 -6.00 16 15 C 0.19 10.08 5.37 86.85 0.47 10.55 16 16 N -0.61 -33.96 2.84 -668.27 -1.90 -35.86 16 17 C -0.24 -14.00 9.65 84.03 0.81 -13.19 16 18 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 19 C -0.06 -3.41 5.46 84.86 0.46 -2.95 16 20 N -0.94 -58.87 10.70 21.65 0.23 -58.64 16 21 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 24 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 25 H 0.11 1.02 5.30 -2.39 -0.01 1.01 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.13 1.30 5.24 -2.39 -0.01 1.28 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 2.35 5.48 -2.39 -0.01 2.33 16 35 H 0.04 1.68 8.02 -2.39 -0.02 1.66 16 36 H 0.06 2.47 5.12 -2.38 -0.01 2.46 16 37 H 0.09 3.72 5.61 -7.48 -0.04 3.67 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 39 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.02 1.32 7.15 -2.39 -0.02 1.30 16 41 H 0.00 -0.05 7.99 -2.39 -0.02 -0.07 16 42 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -74.57 308.56 3.66 -70.91 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.90 Total: 12.08 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 4.78 Total: 3.72 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -4.01 Total: -114.39 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.03 Total: -21.90 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -74.57 3.66 -70.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025178710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.238 kcal (2) G-P(sol) polarization free energy of solvation -74.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds