Wall clock time and date at job start Mon Mar 30 2020 00:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46977 * 2 1 4 4 C 1.34767 * 120.00254 * 269.99436 * 3 2 1 5 5 O 1.21281 * 120.00320 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99889 * 0.02562 * 4 3 2 7 7 C 1.53777 * 113.61336 * 277.49328 * 6 4 3 8 8 C 1.53786 * 87.08101 * 220.01978 * 7 6 4 9 9 C 1.53779 * 87.08162 * 25.43187 * 8 7 6 10 10 C 1.46505 * 119.99741 * 90.00323 * 3 2 1 11 11 H 1.09004 * 110.64003 * 181.68648 * 10 3 2 12 12 C 1.55157 * 110.71616 * 305.01983 * 10 3 2 13 13 C 1.55124 * 101.48746 * 82.70244 * 12 10 3 14 14 N 1.47424 * 104.72581 * 37.28923 * 13 12 10 15 15 C 1.36931 * 125.65153 * 155.81877 * 14 13 12 16 16 H 1.08002 * 120.00438 * 179.69975 * 15 14 13 17 17 C 1.38817 * 119.99680 * 359.41933 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.47028 * 108.70186 * 335.55873 * 14 13 12 24 24 H 1.08998 * 109.46812 * 60.00104 * 1 2 3 25 25 H 1.09005 * 109.47099 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47255 * 299.99831 * 1 2 3 27 27 H 1.09001 * 109.47092 * 239.99993 * 2 1 3 28 28 H 1.09003 * 109.47289 * 119.99904 * 2 1 3 29 29 H 1.09000 * 112.85244 * 48.80202 * 6 4 3 30 30 H 1.09005 * 113.61888 * 334.56434 * 7 6 4 31 31 H 1.08998 * 113.62009 * 105.47059 * 7 6 4 32 32 H 1.08997 * 113.60954 * 270.87924 * 8 7 6 33 33 H 1.09004 * 113.68702 * 139.99251 * 8 7 6 34 34 H 1.08993 * 113.61165 * 220.01897 * 9 8 7 35 35 H 1.08996 * 113.61431 * 89.11509 * 9 8 7 36 36 H 1.09004 * 111.00311 * 200.93790 * 12 10 3 37 37 H 1.09001 * 111.00512 * 324.78811 * 12 10 3 38 38 H 1.09007 * 110.49220 * 278.45328 * 13 12 10 39 39 H 1.09000 * 110.34724 * 156.05585 * 13 12 10 40 40 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.88337 * 120.69608 * 23 14 13 42 42 H 1.08998 * 109.88121 * 241.71192 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 -1.1671 5 8 2.6468 3.1601 -1.1671 6 6 1.9914 1.3063 -2.4722 7 6 3.1524 0.3998 -2.9140 8 6 2.8951 0.9006 -4.3451 9 6 2.2956 2.1664 -3.7102 10 6 2.2625 2.0718 1.2688 11 1 2.5925 3.0955 1.0918 12 6 0.9931 2.0466 2.1606 13 6 1.1055 0.6464 2.8187 14 7 2.5477 0.4615 3.0621 15 6 3.0984 -0.3625 4.0070 16 1 4.1719 -0.4319 4.1036 17 6 2.2768 -1.1045 4.8446 18 7 0.9687 -1.0199 4.7269 19 14 3.0280 -2.2228 6.1387 20 1 3.8553 -1.4154 7.0707 21 1 1.9453 -2.8997 6.8966 22 1 3.8806 -3.2427 5.4769 23 6 3.2970 1.3037 2.1182 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.0172 0.8189 -2.5079 30 1 4.1198 0.7025 -2.5129 31 1 2.9517 -0.6632 -2.7806 32 1 2.1686 0.3010 -4.8934 33 1 3.8059 1.0869 -4.9142 34 1 1.4030 2.5295 -4.2196 35 1 3.0285 2.9520 -3.5267 36 1 1.0261 2.8378 2.9097 37 1 0.0892 2.1208 1.5559 38 1 0.7331 -0.1238 2.1431 39 1 0.5561 0.6247 3.7598 40 1 0.3946 -1.5387 5.3120 41 1 3.9229 2.0081 2.6661 42 1 3.9172 0.6789 1.4756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033721337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:29 Heat of formation + Delta-G solvation = 20.363619 kcal Electronic energy + Delta-G solvation = -21712.384666 eV Core-core repulsion = 18694.282681 eV Total energy + Delta-G solvation = -3018.101985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44370 -38.35457 -36.77933 -34.69190 -32.23852 -30.47597 -29.30902 -27.42337 -26.18889 -25.69164 -24.47417 -22.91974 -21.11299 -20.17229 -19.37539 -18.46114 -17.30003 -16.98905 -16.04812 -15.52340 -14.72056 -14.60167 -14.43731 -13.80892 -13.74053 -12.98849 -12.76484 -12.68445 -12.46422 -12.14727 -12.06254 -11.87010 -11.60249 -11.44170 -11.19799 -11.03717 -10.90424 -10.85571 -10.59027 -10.46252 -10.38931 -10.20303 -10.12431 -9.84748 -9.53821 -9.22979 -8.64844 -8.21844 -6.84799 -5.67351 -3.09111 2.87876 3.34793 3.39144 3.43674 3.44443 4.47366 4.48368 4.56422 4.64718 4.75945 5.02688 5.33571 5.42441 5.45615 5.47277 5.52475 5.59930 5.68230 5.71648 5.75401 5.78052 5.80948 5.88063 5.94366 6.04327 6.10423 6.20510 6.33205 6.35815 6.43279 6.49926 6.63635 6.69056 6.76262 7.11656 7.48827 7.60743 7.81580 7.85543 8.34403 8.51000 9.20035 9.80541 10.45418 11.35698 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031530 B = 0.005095 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.830480 B = 5494.470818 C = 5603.378221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 N -0.588 5.588 4 C 0.521 3.479 5 O -0.554 6.554 6 C -0.137 4.137 7 C -0.123 4.123 8 C -0.141 4.141 9 C -0.118 4.118 10 C 0.125 3.875 11 H 0.097 0.903 12 C -0.158 4.158 13 C 0.138 3.862 14 N -0.602 5.602 15 C -0.222 4.222 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.127 3.873 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.105 0.895 40 H 0.252 0.748 41 H 0.031 0.969 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.693 1.989 -14.525 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 N -0.319 5.319 4 C 0.309 3.691 5 O -0.433 6.433 6 C -0.158 4.158 7 C -0.161 4.161 8 C -0.179 4.179 9 C -0.156 4.156 10 C 0.021 3.979 11 H 0.115 0.885 12 C -0.197 4.197 13 C 0.014 3.986 14 N -0.329 5.329 15 C -0.351 4.351 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.000 4.000 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.122 0.878 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.543 2.429 -14.329 14.544 hybrid contribution 0.285 -0.733 0.763 1.095 sum -0.258 1.697 -13.567 13.675 Atomic orbital electron populations 1.22438 0.96126 1.02303 1.02465 1.21819 0.94440 0.82315 1.04169 1.47935 1.64191 1.14331 1.05395 1.20478 0.77029 0.86324 0.85226 1.90628 1.47072 1.18133 1.87469 1.22792 1.01098 0.99190 0.92722 1.22823 0.97893 0.99118 0.96248 1.22827 1.01234 0.97690 0.96132 1.22792 1.01596 0.96912 0.94280 1.22112 0.96955 0.96383 0.82437 0.88471 1.23462 0.95961 1.02005 0.98301 1.22352 0.86102 0.89314 1.00847 1.44526 1.01550 1.49195 1.37612 1.19028 0.91475 1.16305 1.08271 0.90641 1.24751 0.95482 1.00431 0.99783 1.69779 1.01737 1.44535 1.40991 0.86170 0.77704 0.80338 0.81384 1.21216 1.21598 1.21280 1.21633 0.93540 0.93362 0.91428 0.93635 0.91795 0.90382 0.91417 0.87380 0.87155 0.89696 0.90696 0.90055 0.91174 0.91326 0.88828 0.91253 0.91802 0.95035 0.87765 0.93725 0.95136 0.95662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 8.99 37.16 0.33 -2.17 16 2 C 0.10 1.49 4.90 -4.04 -0.02 1.47 16 3 N -0.59 -9.90 2.45 -164.02 -0.40 -10.30 16 4 C 0.52 8.55 7.20 -10.99 -0.08 8.47 16 5 O -0.55 -10.80 15.27 5.56 0.08 -10.72 16 6 C -0.14 -1.69 2.79 -90.96 -0.25 -1.94 16 7 C -0.12 -1.33 6.91 -25.92 -0.18 -1.50 16 8 C -0.14 -1.29 8.08 -25.92 -0.21 -1.50 16 9 C -0.12 -1.32 7.41 -25.92 -0.19 -1.51 16 10 C 0.12 2.36 3.58 -66.09 -0.24 2.12 16 11 H 0.10 1.88 6.99 -51.93 -0.36 1.51 16 12 C -0.16 -3.03 6.11 -24.47 -0.15 -3.18 16 13 C 0.14 3.16 4.66 -2.41 -0.01 3.15 16 14 N -0.60 -14.85 2.97 -169.93 -0.51 -15.36 16 15 C -0.22 -6.03 10.27 -15.06 -0.15 -6.19 16 16 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -25.88 10.08 55.49 0.56 -25.32 16 19 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.13 2.71 6.24 -3.06 -0.02 2.69 16 24 H 0.04 0.57 7.23 -51.93 -0.38 0.19 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.26 4.33 -51.93 -0.23 1.03 16 27 H 0.07 0.90 5.79 -51.93 -0.30 0.60 16 28 H 0.11 2.09 5.18 -51.93 -0.27 1.82 16 29 H 0.11 1.21 6.88 -51.93 -0.36 0.86 16 30 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.07 0.72 7.68 -51.93 -0.40 0.33 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.20 7.43 -51.93 -0.39 0.81 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.13 6.46 -51.93 -0.34 0.79 16 38 H 0.03 0.72 4.00 -51.92 -0.21 0.51 16 39 H 0.10 2.76 5.85 -51.93 -0.30 2.46 16 40 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -29.66 313.24 -8.27 -37.94 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.44 Total: 2.85 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.27 Total: -0.43 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.35 Total: -50.98 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.66 -8.27 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033721337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.302 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds