Wall clock time and date at job start Mon Mar 30 2020 00:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46977 * 2 1 4 4 C 1.34767 * 120.00254 * 269.99436 * 3 2 1 5 5 O 1.21281 * 120.00320 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99889 * 0.02562 * 4 3 2 7 7 C 1.53777 * 113.61336 * 277.49328 * 6 4 3 8 8 C 1.53786 * 87.08101 * 220.01978 * 7 6 4 9 9 C 1.53779 * 87.08162 * 25.43187 * 8 7 6 10 10 C 1.46505 * 119.99741 * 90.00323 * 3 2 1 11 11 H 1.09004 * 110.64003 * 181.68648 * 10 3 2 12 12 C 1.55157 * 110.71616 * 305.01983 * 10 3 2 13 13 C 1.55124 * 101.48746 * 82.70244 * 12 10 3 14 14 N 1.47424 * 104.72581 * 37.28923 * 13 12 10 15 15 C 1.36931 * 125.65153 * 155.81877 * 14 13 12 16 16 H 1.08002 * 120.00438 * 179.69975 * 15 14 13 17 17 C 1.38817 * 119.99680 * 359.41933 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.47028 * 108.70186 * 335.55873 * 14 13 12 24 24 H 1.08998 * 109.46812 * 60.00104 * 1 2 3 25 25 H 1.09005 * 109.47099 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47255 * 299.99831 * 1 2 3 27 27 H 1.09001 * 109.47092 * 239.99993 * 2 1 3 28 28 H 1.09003 * 109.47289 * 119.99904 * 2 1 3 29 29 H 1.09000 * 112.85244 * 48.80202 * 6 4 3 30 30 H 1.09005 * 113.61888 * 334.56434 * 7 6 4 31 31 H 1.08998 * 113.62009 * 105.47059 * 7 6 4 32 32 H 1.08997 * 113.60954 * 270.87924 * 8 7 6 33 33 H 1.09004 * 113.68702 * 139.99251 * 8 7 6 34 34 H 1.08993 * 113.61165 * 220.01897 * 9 8 7 35 35 H 1.08996 * 113.61431 * 89.11509 * 9 8 7 36 36 H 1.09004 * 111.00311 * 200.93790 * 12 10 3 37 37 H 1.09001 * 111.00512 * 324.78811 * 12 10 3 38 38 H 1.09007 * 110.49220 * 278.45328 * 13 12 10 39 39 H 1.09000 * 110.34724 * 156.05585 * 13 12 10 40 40 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.88337 * 120.69608 * 23 14 13 42 42 H 1.08998 * 109.88121 * 241.71192 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 -1.1671 5 8 2.6468 3.1601 -1.1671 6 6 1.9914 1.3063 -2.4722 7 6 3.1524 0.3998 -2.9140 8 6 2.8951 0.9006 -4.3451 9 6 2.2956 2.1664 -3.7102 10 6 2.2625 2.0718 1.2688 11 1 2.5925 3.0955 1.0918 12 6 0.9931 2.0466 2.1606 13 6 1.1055 0.6464 2.8187 14 7 2.5477 0.4615 3.0621 15 6 3.0984 -0.3625 4.0070 16 1 4.1719 -0.4319 4.1036 17 6 2.2768 -1.1045 4.8446 18 7 0.9687 -1.0199 4.7269 19 14 3.0280 -2.2228 6.1387 20 1 3.8553 -1.4154 7.0707 21 1 1.9453 -2.8997 6.8966 22 1 3.8806 -3.2427 5.4769 23 6 3.2970 1.3037 2.1182 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.0172 0.8189 -2.5079 30 1 4.1198 0.7025 -2.5129 31 1 2.9517 -0.6632 -2.7806 32 1 2.1686 0.3010 -4.8934 33 1 3.8059 1.0869 -4.9142 34 1 1.4030 2.5295 -4.2196 35 1 3.0285 2.9520 -3.5267 36 1 1.0261 2.8378 2.9097 37 1 0.0892 2.1208 1.5559 38 1 0.7331 -0.1238 2.1431 39 1 0.5561 0.6247 3.7598 40 1 0.3946 -1.5387 5.3120 41 1 3.9229 2.0081 2.6661 42 1 3.9172 0.6789 1.4756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033721337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:29 Heat of formation + Delta-G solvation = 3.908821 kcal Electronic energy + Delta-G solvation = -21713.098199 eV Core-core repulsion = 18694.282681 eV Total energy + Delta-G solvation = -3018.815518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70930 -39.69674 -38.04823 -36.27193 -34.09590 -31.87234 -31.12630 -28.89315 -27.48980 -26.57004 -26.27981 -24.18101 -22.42875 -22.02755 -20.47721 -19.73005 -18.92272 -18.58248 -17.43527 -16.72522 -16.48442 -15.86172 -15.82222 -15.60702 -15.02348 -14.38215 -14.25085 -13.84753 -13.72271 -13.52414 -13.43526 -13.28105 -12.96133 -12.93213 -12.88176 -12.68489 -12.28458 -12.09246 -12.05455 -11.97799 -11.78974 -11.62775 -11.41185 -11.36920 -11.25043 -10.68104 -10.53084 -9.64307 -8.84558 -7.74166 -5.18057 1.48863 1.50712 1.57161 1.61036 2.02872 2.51245 3.35408 3.50157 3.64139 3.69771 3.74851 3.90307 3.94393 3.98982 4.08887 4.20154 4.31533 4.45808 4.60245 4.63084 4.67365 4.74440 4.81372 4.84063 4.88356 4.94333 4.96816 5.01454 5.05756 5.11652 5.19234 5.23088 5.41454 5.48519 5.53018 5.67386 5.72925 5.85669 6.34680 6.52485 7.14072 7.19995 7.79663 8.43994 9.26216 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031530 B = 0.005095 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.830480 B = 5494.470818 C = 5603.378221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 N -0.589 5.589 4 C 0.517 3.483 5 O -0.590 6.590 6 C -0.137 4.137 7 C -0.125 4.125 8 C -0.124 4.124 9 C -0.122 4.122 10 C 0.135 3.865 11 H 0.095 0.905 12 C -0.143 4.143 13 C 0.146 3.854 14 N -0.618 5.618 15 C -0.240 4.240 16 H 0.074 0.926 17 C -0.057 4.057 18 N -0.942 5.942 19 Si 0.976 3.024 20 H -0.282 1.282 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.129 3.871 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.247 0.753 41 H 0.026 0.974 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 1.183 -16.480 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.319 5.319 4 C 0.308 3.692 5 O -0.471 6.471 6 C -0.158 4.158 7 C -0.163 4.163 8 C -0.162 4.162 9 C -0.160 4.160 10 C 0.031 3.969 11 H 0.113 0.887 12 C -0.183 4.183 13 C 0.022 3.978 14 N -0.344 5.344 15 C -0.369 4.369 16 H 0.092 0.908 17 C -0.250 4.250 18 N -0.591 5.591 19 Si 0.804 3.196 20 H -0.209 1.209 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.003 3.997 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.151 0.849 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.857 1.623 -16.308 16.411 hybrid contribution 0.421 -0.453 1.357 1.492 sum -0.436 1.171 -14.950 15.002 Atomic orbital electron populations 1.22360 0.94791 1.03100 1.02492 1.21795 0.95443 0.81331 1.03673 1.47992 1.64322 1.14775 1.04841 1.21272 0.75795 0.86014 0.86138 1.90612 1.48562 1.19902 1.87993 1.22975 1.02755 0.99751 0.90300 1.22853 0.96353 0.99689 0.97360 1.22800 1.01977 0.96179 0.95207 1.22798 1.01816 0.97205 0.94142 1.21830 0.95787 0.96052 0.83245 0.88716 1.23309 0.97049 0.99614 0.98286 1.22149 0.84873 0.91462 0.99330 1.44714 1.02631 1.49259 1.37824 1.19325 0.91704 1.16868 1.09025 0.90792 1.25485 0.95964 1.01901 1.01628 1.70015 1.02604 1.45015 1.41495 0.85201 0.76843 0.78595 0.78940 1.20876 1.21819 1.20550 1.21667 0.93975 0.92921 0.91152 0.91228 0.90661 0.92590 0.88536 0.91169 0.84917 0.91439 0.89072 0.87668 0.90404 0.89935 0.91152 0.91430 0.89850 0.94810 0.91409 0.94293 0.95605 0.95978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.46 8.99 71.98 0.65 -3.81 16 2 C 0.10 2.97 4.90 86.38 0.42 3.39 16 3 N -0.59 -19.23 2.45 -791.25 -1.94 -21.17 16 4 C 0.52 16.27 7.20 87.66 0.63 16.90 16 5 O -0.59 -22.75 15.27 -3.03 -0.05 -22.79 16 6 C -0.14 -2.99 2.79 -11.01 -0.03 -3.02 16 7 C -0.12 -2.33 6.91 31.12 0.22 -2.12 16 8 C -0.12 -1.82 8.08 31.12 0.25 -1.57 16 9 C -0.12 -2.41 7.41 31.12 0.23 -2.18 16 10 C 0.14 5.11 3.58 46.18 0.17 5.28 16 11 H 0.09 3.66 6.99 -2.38 -0.02 3.65 16 12 C -0.14 -5.50 6.11 32.06 0.20 -5.31 16 13 C 0.15 6.81 4.66 86.93 0.41 7.22 16 14 N -0.62 -31.08 2.97 -691.54 -2.06 -33.13 16 15 C -0.24 -13.25 10.27 84.04 0.86 -12.38 16 16 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 17 C -0.06 -3.12 5.49 84.86 0.47 -2.65 16 18 N -0.94 -53.86 10.08 21.65 0.22 -53.64 16 19 Si 0.98 44.78 29.55 68.60 2.03 46.81 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 C 0.13 5.59 6.24 86.73 0.54 6.13 16 24 H 0.07 1.49 7.23 -2.39 -0.02 1.48 16 25 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.06 1.73 4.33 -2.39 -0.01 1.72 16 27 H 0.10 2.29 5.79 -2.39 -0.01 2.28 16 28 H 0.07 2.69 5.18 -2.39 -0.01 2.68 16 29 H 0.13 2.34 6.88 -2.39 -0.02 2.32 16 30 H 0.07 1.51 8.09 -2.38 -0.02 1.49 16 31 H 0.09 1.42 7.68 -2.39 -0.02 1.40 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.74 7.43 -2.39 -0.02 1.72 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.08 2.87 6.46 -2.39 -0.02 2.86 16 38 H 0.03 1.57 4.00 -2.38 -0.01 1.56 16 39 H 0.07 3.70 5.85 -2.39 -0.01 3.69 16 40 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.02 0.97 8.05 -2.39 -0.02 0.95 16 Total: -1.00 -64.96 313.24 4.22 -60.74 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.01 Total: 17.32 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.01 Total: 5.87 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -3.78 Total: -107.95 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.96 4.22 -60.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033721337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.650 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds