Wall clock time and date at job start Mon Mar 30 2020 00:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47160 * 2 1 4 4 C 1.34770 * 120.00437 * 89.99904 * 3 2 1 5 5 O 1.21288 * 120.00091 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99999 * 0.02562 * 4 3 2 7 7 H 1.09002 * 115.54929 * 34.41763 * 6 4 3 8 8 C 1.52999 * 117.51845 * 248.71846 * 6 4 3 9 9 C 1.53005 * 117.49884 * 180.08744 * 6 4 3 10 10 H 1.08992 * 117.49816 * 0.02572 * 9 6 4 11 11 C 1.53003 * 117.49667 * 215.02300 * 9 6 4 12 12 C 1.46511 * 119.99846 * 269.99937 * 3 2 1 13 13 H 1.08994 * 110.63845 * 178.31168 * 12 3 2 14 14 C 1.55154 * 110.71620 * 54.97380 * 12 3 2 15 15 C 1.54906 * 101.58281 * 277.13803 * 14 12 3 16 16 N 1.47428 * 104.83615 * 322.99224 * 15 14 12 17 17 C 1.36932 * 125.65242 * 204.16095 * 16 15 14 18 18 H 1.07998 * 119.99928 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99945 * 359.96643 * 17 16 15 20 20 N 1.31626 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00113 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47278 * 89.99423 * 21 19 17 23 23 H 1.48497 * 109.47221 * 209.99547 * 21 19 17 24 24 H 1.48496 * 109.47140 * 329.99684 * 21 19 17 25 25 C 1.47029 * 108.69722 * 24.13043 * 16 15 14 26 26 H 1.09003 * 109.47061 * 300.00481 * 1 2 3 27 27 H 1.09000 * 109.47083 * 60.00250 * 1 2 3 28 28 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47057 * 239.99991 * 2 1 3 30 30 H 1.09000 * 109.47083 * 119.99750 * 2 1 3 31 31 H 1.09003 * 117.50034 * 0.02562 * 8 6 4 32 32 H 1.08995 * 117.49797 * 145.02631 * 8 6 4 33 33 H 1.09005 * 109.46722 * 60.00333 * 11 9 6 34 34 H 1.08994 * 109.46708 * 179.97438 * 11 9 6 35 35 H 1.08999 * 109.46998 * 300.00484 * 11 9 6 36 36 H 1.09002 * 111.00645 * 35.21654 * 14 12 3 37 37 H 1.09008 * 110.99841 * 159.06686 * 14 12 3 38 38 H 1.09009 * 110.36914 * 204.15297 * 15 14 12 39 39 H 1.08997 * 110.45974 * 81.88292 * 15 14 12 40 40 H 0.96997 * 119.99801 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.87653 * 239.52175 * 25 16 15 42 42 H 1.08999 * 110.01207 * 118.43098 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 1.1671 5 8 2.6468 3.1602 1.1670 6 6 1.9924 1.3061 2.4722 7 1 2.2043 0.2369 2.4737 8 6 0.8247 1.7960 3.3310 9 6 2.2644 2.0820 3.7626 10 1 2.6242 3.1064 3.6675 11 6 2.8136 1.2977 4.9560 12 6 2.2625 2.0718 -1.2688 13 1 2.5925 3.0954 -1.0918 14 6 0.9931 2.0466 -2.1606 15 6 1.1056 0.6504 -2.8223 16 7 2.5479 0.4614 -3.0621 17 6 3.0985 -0.3617 -4.0078 18 1 4.1719 -0.4302 -4.1050 19 6 2.2771 -1.1080 -4.8416 20 7 0.9688 -1.0249 -4.7227 21 14 3.0282 -2.2303 -6.1321 22 1 3.2446 -3.5791 -5.5498 23 1 2.1086 -2.3343 -7.2934 24 1 4.3286 -1.6698 -6.5791 25 6 3.2970 1.3037 -2.1182 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.2371 2.6321 2.9518 32 1 0.2684 1.0491 3.8973 33 1 3.7676 0.8452 4.6854 34 1 2.9584 1.9732 5.7990 35 1 2.1064 0.5160 5.2335 36 1 0.0893 2.1207 -1.5559 37 1 1.0262 2.8378 -2.9097 38 1 0.5586 0.6322 -3.7650 39 1 0.7283 -0.1209 -2.1508 40 1 0.3948 -1.5467 -5.3050 41 1 3.9230 2.0079 -2.6661 42 1 3.9170 0.6808 -1.4734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033930550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:11 Heat of formation + Delta-G solvation = 24.711997 kcal Electronic energy + Delta-G solvation = -21476.576937 eV Core-core repulsion = 18458.663512 eV Total energy + Delta-G solvation = -3017.913425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22975 -38.08540 -36.40806 -34.69895 -32.23734 -30.46566 -29.38066 -28.77082 -26.99753 -24.77930 -23.90819 -22.80859 -21.06832 -20.19296 -19.87582 -18.36043 -17.35197 -16.99424 -16.10167 -14.94762 -14.74637 -14.55180 -14.11858 -13.77062 -13.74936 -13.35983 -12.84463 -12.78198 -12.63956 -12.15016 -12.07002 -11.90201 -11.63162 -11.50202 -11.44042 -11.05055 -10.92692 -10.87402 -10.50836 -10.30863 -10.23438 -10.12784 -10.04504 -9.84816 -9.54871 -9.32775 -8.65144 -8.23650 -6.85016 -5.67861 -3.09358 2.70987 3.25382 3.38146 3.43911 3.45424 3.82270 4.47162 4.53957 4.71998 4.75945 5.05008 5.20481 5.34512 5.42147 5.47053 5.47939 5.54971 5.60144 5.62559 5.69917 5.73706 5.79467 5.88949 5.92940 5.95730 6.12288 6.19712 6.23571 6.32494 6.43296 6.50496 6.63215 6.69320 6.75877 7.09934 7.49066 7.60990 7.79730 7.84352 8.33736 8.48768 9.19783 9.80204 10.45007 11.35545 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033914 B = 0.004763 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.430924 B = 5877.634059 C = 5929.766356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 N -0.585 5.585 4 C 0.541 3.459 5 O -0.555 6.555 6 C -0.186 4.186 7 H 0.123 0.877 8 C -0.148 4.148 9 C -0.127 4.127 10 H 0.115 0.885 11 C -0.122 4.122 12 C 0.126 3.874 13 H 0.098 0.902 14 C -0.158 4.158 15 C 0.139 3.861 16 N -0.602 5.602 17 C -0.222 4.222 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.127 3.873 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.032 0.968 40 H 0.251 0.749 41 H 0.032 0.968 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 2.631 14.987 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.026 4.026 3 N -0.315 5.315 4 C 0.330 3.670 5 O -0.434 6.434 6 C -0.207 4.207 7 H 0.141 0.859 8 C -0.185 4.185 9 C -0.145 4.145 10 H 0.133 0.867 11 C -0.179 4.179 12 C 0.022 3.978 13 H 0.116 0.884 14 C -0.197 4.197 15 C 0.014 3.986 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.000 4.000 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.432 3.071 14.783 15.166 hybrid contribution 0.350 -0.800 -0.773 1.166 sum -1.082 2.271 14.010 14.234 Atomic orbital electron populations 1.22405 0.95929 1.02256 1.02552 1.21816 0.94648 0.82167 1.03972 1.47853 1.64060 1.14388 1.05227 1.19619 0.76995 0.85922 0.84495 1.90638 1.47200 1.18158 1.87413 1.22343 1.07125 1.00484 0.90701 0.85945 1.23048 0.90904 1.03089 1.01487 1.22361 0.98108 1.00725 0.93325 0.86676 1.21386 1.00972 0.99448 0.96122 1.22126 0.97016 0.96384 0.82267 0.88411 1.23427 0.95955 1.02037 0.98274 1.22284 0.86064 0.89374 1.00834 1.44536 1.01538 1.49232 1.37606 1.19075 0.91523 1.16118 1.08323 0.90565 1.24756 0.95494 1.00387 0.99848 1.69800 1.01736 1.44329 1.41146 0.86090 0.77912 0.80532 0.81064 1.21683 1.21688 1.20754 1.21634 0.93529 0.93392 0.91433 0.93365 0.90510 0.91894 0.87430 0.91561 0.88468 0.88021 0.92014 0.91880 0.92439 0.91742 0.91232 0.87852 0.95001 0.93778 0.95063 0.95612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.06 37.16 0.34 -2.17 16 2 C 0.10 1.53 5.04 -4.04 -0.02 1.51 16 3 N -0.58 -9.97 2.45 -164.03 -0.40 -10.37 16 4 C 0.54 9.04 7.46 -10.99 -0.08 8.96 16 5 O -0.55 -10.93 15.63 5.55 0.09 -10.84 16 6 C -0.19 -2.35 5.01 -91.77 -0.46 -2.81 16 7 H 0.12 1.39 6.44 -51.93 -0.33 1.06 16 8 C -0.15 -1.57 9.88 -26.73 -0.26 -1.83 16 9 C -0.13 -1.42 5.92 -90.61 -0.54 -1.95 16 10 H 0.12 1.47 7.67 -51.93 -0.40 1.07 16 11 C -0.12 -1.05 10.19 37.16 0.38 -0.67 16 12 C 0.13 2.38 3.58 -66.09 -0.24 2.14 16 13 H 0.10 1.89 6.99 -51.93 -0.36 1.52 16 14 C -0.16 -3.03 6.09 -24.59 -0.15 -3.18 16 15 C 0.14 3.18 4.64 -2.53 -0.01 3.17 16 16 N -0.60 -14.90 2.97 -170.07 -0.51 -15.40 16 17 C -0.22 -6.04 10.27 -15.06 -0.15 -6.19 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -25.90 10.09 55.49 0.56 -25.34 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 C 0.13 2.71 6.24 -3.06 -0.02 2.69 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.25 4.33 -51.93 -0.22 1.02 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.11 2.09 5.19 -51.93 -0.27 1.82 16 30 H 0.07 0.89 6.00 -51.93 -0.31 0.58 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 36 H 0.06 1.14 6.46 -51.93 -0.34 0.80 16 37 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 38 H 0.10 2.74 5.87 -51.92 -0.31 2.43 16 39 H 0.03 0.73 4.03 -51.93 -0.21 0.52 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -29.86 320.99 -8.26 -38.12 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.50 Total: 3.02 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.31 Total: -0.67 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.35 Total: -51.11 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.86 -8.26 -38.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033930550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.832 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds