Wall clock time and date at job start Mon Mar 30 2020 00:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47160 * 2 1 4 4 C 1.34770 * 120.00437 * 89.99904 * 3 2 1 5 5 O 1.21288 * 120.00091 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99999 * 0.02562 * 4 3 2 7 7 H 1.09002 * 115.54929 * 34.41763 * 6 4 3 8 8 C 1.52999 * 117.51845 * 248.71846 * 6 4 3 9 9 C 1.53005 * 117.49884 * 180.08744 * 6 4 3 10 10 H 1.08992 * 117.49816 * 0.02572 * 9 6 4 11 11 C 1.53003 * 117.49667 * 215.02300 * 9 6 4 12 12 C 1.46511 * 119.99846 * 269.99937 * 3 2 1 13 13 H 1.08994 * 110.63845 * 178.31168 * 12 3 2 14 14 C 1.55154 * 110.71620 * 54.97380 * 12 3 2 15 15 C 1.54906 * 101.58281 * 277.13803 * 14 12 3 16 16 N 1.47428 * 104.83615 * 322.99224 * 15 14 12 17 17 C 1.36932 * 125.65242 * 204.16095 * 16 15 14 18 18 H 1.07998 * 119.99928 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99945 * 359.96643 * 17 16 15 20 20 N 1.31626 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00113 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47278 * 89.99423 * 21 19 17 23 23 H 1.48497 * 109.47221 * 209.99547 * 21 19 17 24 24 H 1.48496 * 109.47140 * 329.99684 * 21 19 17 25 25 C 1.47029 * 108.69722 * 24.13043 * 16 15 14 26 26 H 1.09003 * 109.47061 * 300.00481 * 1 2 3 27 27 H 1.09000 * 109.47083 * 60.00250 * 1 2 3 28 28 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47057 * 239.99991 * 2 1 3 30 30 H 1.09000 * 109.47083 * 119.99750 * 2 1 3 31 31 H 1.09003 * 117.50034 * 0.02562 * 8 6 4 32 32 H 1.08995 * 117.49797 * 145.02631 * 8 6 4 33 33 H 1.09005 * 109.46722 * 60.00333 * 11 9 6 34 34 H 1.08994 * 109.46708 * 179.97438 * 11 9 6 35 35 H 1.08999 * 109.46998 * 300.00484 * 11 9 6 36 36 H 1.09002 * 111.00645 * 35.21654 * 14 12 3 37 37 H 1.09008 * 110.99841 * 159.06686 * 14 12 3 38 38 H 1.09009 * 110.36914 * 204.15297 * 15 14 12 39 39 H 1.08997 * 110.45974 * 81.88292 * 15 14 12 40 40 H 0.96997 * 119.99801 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.87653 * 239.52175 * 25 16 15 42 42 H 1.08999 * 110.01207 * 118.43098 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 1.1671 5 8 2.6468 3.1602 1.1670 6 6 1.9924 1.3061 2.4722 7 1 2.2043 0.2369 2.4737 8 6 0.8247 1.7960 3.3310 9 6 2.2644 2.0820 3.7626 10 1 2.6242 3.1064 3.6675 11 6 2.8136 1.2977 4.9560 12 6 2.2625 2.0718 -1.2688 13 1 2.5925 3.0954 -1.0918 14 6 0.9931 2.0466 -2.1606 15 6 1.1056 0.6504 -2.8223 16 7 2.5479 0.4614 -3.0621 17 6 3.0985 -0.3617 -4.0078 18 1 4.1719 -0.4302 -4.1050 19 6 2.2771 -1.1080 -4.8416 20 7 0.9688 -1.0249 -4.7227 21 14 3.0282 -2.2303 -6.1321 22 1 3.2446 -3.5791 -5.5498 23 1 2.1086 -2.3343 -7.2934 24 1 4.3286 -1.6698 -6.5791 25 6 3.2970 1.3037 -2.1182 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.2371 2.6321 2.9518 32 1 0.2684 1.0491 3.8973 33 1 3.7676 0.8452 4.6854 34 1 2.9584 1.9732 5.7990 35 1 2.1064 0.5160 5.2335 36 1 0.0893 2.1207 -1.5559 37 1 1.0262 2.8378 -2.9097 38 1 0.5586 0.6322 -3.7650 39 1 0.7283 -0.1209 -2.1508 40 1 0.3948 -1.5467 -5.3050 41 1 3.9230 2.0079 -2.6661 42 1 3.9170 0.6808 -1.4734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033930550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:10 Heat of formation + Delta-G solvation = 8.335096 kcal Electronic energy + Delta-G solvation = -21477.287093 eV Core-core repulsion = 18458.663512 eV Total energy + Delta-G solvation = -3018.623581 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56858 -39.50525 -37.56460 -36.28521 -34.09980 -31.86908 -31.14891 -29.64359 -28.59680 -26.60474 -25.14556 -24.10588 -22.14019 -21.97409 -21.15027 -19.67292 -18.93736 -18.62647 -17.51357 -16.71958 -16.19762 -15.93672 -15.63862 -15.19795 -14.96171 -14.47790 -14.14230 -14.05132 -13.76178 -13.65789 -13.50038 -13.37490 -12.99721 -12.95070 -12.82569 -12.70103 -12.30460 -12.27050 -12.03110 -12.00374 -11.79922 -11.71843 -11.41910 -11.22761 -10.91942 -10.72268 -10.62905 -9.66849 -8.85143 -7.75007 -5.18659 1.47631 1.48987 1.49520 1.58151 1.95150 2.50711 2.88270 3.34965 3.45247 3.71322 3.79567 3.87091 3.89135 4.01923 4.04931 4.23263 4.31942 4.44413 4.46086 4.58408 4.63962 4.69986 4.77982 4.84063 4.89455 4.93483 4.95608 4.99438 5.00945 5.08864 5.19986 5.24209 5.41692 5.45447 5.48708 5.63749 5.72266 5.85120 6.33799 6.48613 7.13452 7.16721 7.78955 8.43259 9.25887 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033914 B = 0.004763 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.430924 B = 5877.634059 C = 5929.766356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 N -0.586 5.586 4 C 0.537 3.463 5 O -0.591 6.591 6 C -0.198 4.198 7 H 0.141 0.859 8 C -0.130 4.130 9 C -0.126 4.126 10 H 0.093 0.907 11 C -0.118 4.118 12 C 0.136 3.864 13 H 0.096 0.904 14 C -0.143 4.143 15 C 0.147 3.853 16 N -0.618 5.618 17 C -0.240 4.240 18 H 0.075 0.925 19 C -0.057 4.057 20 N -0.942 5.942 21 Si 0.976 3.024 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.275 1.275 25 C 0.129 3.871 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.247 0.753 41 H 0.028 0.972 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 1.891 16.965 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.316 5.316 4 C 0.328 3.672 5 O -0.472 6.472 6 C -0.219 4.219 7 H 0.159 0.841 8 C -0.167 4.167 9 C -0.145 4.145 10 H 0.111 0.889 11 C -0.175 4.175 12 C 0.032 3.968 13 H 0.114 0.886 14 C -0.182 4.182 15 C 0.023 3.977 16 N -0.345 5.345 17 C -0.369 4.369 18 H 0.092 0.908 19 C -0.250 4.250 20 N -0.591 5.591 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.201 1.201 25 C 0.002 3.998 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -1.783 2.331 16.784 17.038 hybrid contribution 0.491 -0.531 -1.364 1.544 sum -1.292 1.800 15.420 15.578 Atomic orbital electron populations 1.22313 0.94624 1.02983 1.02466 1.21803 0.95635 0.81210 1.03529 1.47897 1.64187 1.14826 1.04712 1.20333 0.75798 0.85620 0.85450 1.90620 1.48729 1.19929 1.87966 1.22347 1.09639 1.01022 0.88855 0.84137 1.23180 0.90417 1.03138 0.99996 1.22423 0.98885 0.99796 0.93375 0.88896 1.21394 1.01181 0.99767 0.95120 1.21847 0.95876 0.96063 0.83032 0.88603 1.23271 0.97007 0.99650 0.98252 1.22078 0.84836 0.91512 0.99304 1.44725 1.02626 1.49309 1.37814 1.19364 0.91731 1.16702 1.09085 0.90752 1.25491 0.95978 1.01850 1.01690 1.70032 1.02609 1.44815 1.41666 0.85120 0.77218 0.78732 0.78466 1.21261 1.21994 1.20054 1.21669 0.93971 0.92962 0.91159 0.91189 0.92679 0.90800 0.91180 0.88608 0.89378 0.84910 0.92170 0.90845 0.90672 0.89821 0.91332 0.91482 0.94854 0.94297 0.95454 0.95961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.45 9.06 71.98 0.65 -3.80 16 2 C 0.10 3.03 5.04 86.38 0.43 3.47 16 3 N -0.59 -19.42 2.45 -791.26 -1.94 -21.36 16 4 C 0.54 17.26 7.46 87.66 0.65 17.91 16 5 O -0.59 -23.08 15.63 -3.06 -0.05 -23.12 16 6 C -0.20 -4.49 5.01 -11.54 -0.06 -4.55 16 7 H 0.14 2.67 6.44 -2.39 -0.02 2.66 16 8 C -0.13 -2.31 9.88 30.60 0.30 -2.01 16 9 C -0.13 -2.52 5.92 -10.79 -0.06 -2.58 16 10 H 0.09 2.29 7.67 -2.39 -0.02 2.27 16 11 C -0.12 -1.63 10.19 71.98 0.73 -0.90 16 12 C 0.14 5.16 3.58 46.18 0.17 5.33 16 13 H 0.10 3.71 6.99 -2.39 -0.02 3.69 16 14 C -0.14 -5.47 6.09 31.98 0.19 -5.28 16 15 C 0.15 6.87 4.64 86.85 0.40 7.27 16 16 N -0.62 -31.18 2.97 -691.98 -2.05 -33.24 16 17 C -0.24 -13.25 10.27 84.03 0.86 -12.39 16 18 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.06 -3.14 5.49 84.86 0.47 -2.68 16 20 N -0.94 -53.92 10.09 21.65 0.22 -53.70 16 21 Si 0.98 44.87 29.55 68.60 2.03 46.90 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.13 5.59 6.24 86.73 0.54 6.13 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.72 4.33 -2.39 -0.01 1.71 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 2.71 5.19 -2.39 -0.01 2.69 16 30 H 0.10 2.31 6.00 -2.39 -0.01 2.29 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.13 1.57 8.05 -2.39 -0.02 1.56 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.80 7.90 -2.39 -0.02 0.78 16 36 H 0.08 2.89 6.46 -2.39 -0.02 2.87 16 37 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 38 H 0.07 3.66 5.87 -2.38 -0.01 3.65 16 39 H 0.03 1.56 4.03 -2.39 -0.01 1.55 16 40 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 Total: -1.00 -65.37 320.99 4.50 -60.87 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.01 Total: 17.73 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.29 Total: 5.92 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -3.77 Total: -108.30 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.37 4.50 -60.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033930550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.208 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds