Wall clock time and date at job start Mon Mar 30 2020 00:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 120.00084 * 2 1 4 4 N 1.34773 * 120.00039 * 179.97438 * 2 1 3 5 5 C 1.46932 * 120.62923 * 355.71605 * 4 2 1 6 6 C 1.53188 * 108.77389 * 233.58391 * 5 4 2 7 7 C 1.53038 * 109.31781 * 305.36663 * 6 5 4 8 8 C 1.52995 * 109.46055 * 181.38691 * 7 6 5 9 9 H 1.08992 * 110.64008 * 298.30924 * 8 7 6 10 10 C 1.55160 * 110.86959 * 175.06266 * 8 7 6 11 11 C 1.54914 * 101.58175 * 206.05971 * 10 8 7 12 12 N 1.47428 * 104.82931 * 37.01417 * 11 10 8 13 13 C 1.36933 * 125.65060 * 155.91411 * 12 11 10 14 14 H 1.07998 * 119.99538 * 334.51069 * 13 12 11 15 15 C 1.38804 * 120.00444 * 154.50563 * 13 12 11 16 16 N 1.31616 * 120.00567 * 157.04616 * 15 13 12 17 17 Si 1.86800 * 119.99740 * 337.04838 * 15 13 12 18 18 H 1.48498 * 109.47336 * 85.54998 * 17 15 13 19 19 H 1.48505 * 109.47457 * 205.55178 * 17 15 13 20 20 H 1.48497 * 109.47436 * 325.55030 * 17 15 13 21 21 C 1.47027 * 108.70015 * 335.86986 * 12 11 10 22 22 C 1.53041 * 109.53747 * 61.36258 * 7 6 5 23 23 C 1.46923 * 120.63147 * 175.69438 * 4 2 1 24 24 H 1.08996 * 109.47202 * 264.73301 * 1 2 3 25 25 H 1.08998 * 109.47029 * 24.73011 * 1 2 3 26 26 H 1.09003 * 109.47210 * 144.72860 * 1 2 3 27 27 H 1.09002 * 109.58338 * 113.80001 * 5 4 2 28 28 H 1.08999 * 109.58680 * 353.37209 * 5 4 2 29 29 H 1.09000 * 109.49434 * 185.41196 * 6 5 4 30 30 H 1.09003 * 109.52358 * 65.34112 * 6 5 4 31 31 H 1.09003 * 109.45540 * 301.36101 * 7 6 5 32 32 H 1.08997 * 111.00719 * 324.14009 * 10 8 7 33 33 H 1.09003 * 111.00492 * 87.98824 * 10 8 7 34 34 H 1.09002 * 110.36612 * 155.84600 * 11 10 8 35 35 H 1.08990 * 110.36922 * 278.06516 * 11 10 8 36 36 H 0.97001 * 120.00164 * 179.97438 * 16 15 13 37 37 H 1.09007 * 109.87552 * 241.64186 * 21 12 11 38 38 H 1.08994 * 109.88144 * 120.48167 * 21 12 11 39 39 H 1.09002 * 109.49299 * 58.58822 * 22 7 6 40 40 H 1.08995 * 109.50024 * 178.68485 * 22 7 6 41 41 H 1.09006 * 109.58727 * 246.19929 * 23 4 2 42 42 H 1.08998 * 109.58885 * 6.62492 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4633 -2.4458 0.0955 6 6 2.0474 -3.2537 1.2587 7 6 3.5594 -3.3941 1.0688 8 6 4.1411 -4.2298 2.2106 9 1 3.9751 -3.7388 3.1694 10 6 5.6528 -4.4974 1.9853 11 6 5.8557 -5.8166 2.7716 12 7 4.6190 -6.5860 2.5433 13 6 4.4992 -7.9475 2.6271 14 1 5.3626 -8.5764 2.4675 15 6 3.2681 -8.5194 2.9172 16 7 3.0221 -9.7643 2.5681 17 14 1.9605 -7.5220 3.8031 18 1 1.1866 -6.7305 2.8133 19 1 1.0449 -8.4392 4.5282 20 1 2.6104 -6.6034 4.7721 21 6 3.5354 -5.6492 2.2119 22 6 4.2065 -2.0072 1.0709 23 6 3.6470 -1.1852 -0.0944 24 1 -0.3633 -0.0943 1.0233 25 1 -0.3633 0.9334 -0.4299 26 1 -0.3634 -0.8390 -0.5934 27 1 1.5848 -3.0028 -0.8335 28 1 0.4049 -2.2583 0.2760 29 1 1.5900 -4.2428 1.2804 30 1 1.8449 -2.7386 2.1978 31 1 3.7616 -3.8874 0.1180 32 1 5.8715 -4.6359 0.9265 33 1 6.2586 -3.6947 2.4059 34 1 6.7175 -6.3603 2.3844 35 1 5.9848 -5.6092 3.8337 36 1 2.1619 -10.1641 2.7712 37 1 2.7466 -5.7149 2.9613 38 1 3.1332 -5.8815 1.2259 39 1 3.9837 -1.5034 2.0115 40 1 5.2859 -2.1092 0.9590 41 1 3.9465 -1.6395 -1.0389 42 1 4.0293 -0.1659 -0.0393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039107081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:49 Heat of formation + Delta-G solvation = -19.183069 kcal Electronic energy + Delta-G solvation = -21171.684787 eV Core-core repulsion = 18151.867929 eV Total energy + Delta-G solvation = -3019.816858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.35963 -38.61135 -36.78384 -33.81332 -32.19031 -31.66240 -30.09279 -29.13875 -28.15261 -25.16504 -23.87400 -23.11680 -21.28997 -20.16954 -19.78725 -19.10596 -17.30256 -16.87387 -16.00291 -15.89654 -15.49165 -14.67196 -14.31711 -14.10705 -13.86621 -13.52165 -13.43701 -12.98068 -12.88924 -12.76681 -12.45019 -12.32538 -12.17226 -11.93638 -11.54960 -11.36709 -11.22010 -11.02493 -10.74071 -10.51944 -10.46332 -10.20045 -10.11069 -9.88262 -9.76022 -9.38620 -8.78128 -8.55631 -6.96649 -5.97754 -3.29412 2.45630 2.86318 3.30499 3.45409 3.50429 4.38289 4.53292 4.59450 4.70658 4.77726 4.94006 4.97646 5.04924 5.11799 5.13897 5.24624 5.33159 5.34584 5.47562 5.55161 5.57568 5.60299 5.64958 5.78356 5.86437 5.92682 5.99027 6.03982 6.11235 6.22176 6.30722 6.40930 6.42916 6.53214 6.67060 6.83127 6.85763 7.24599 7.81034 7.99956 8.31713 8.85385 9.68521 10.22252 11.19114 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.005142 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.172157 B = 5443.840022 C = 6163.772682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.512 3.488 3 O -0.555 6.555 4 N -0.611 5.611 5 C 0.106 3.894 6 C -0.135 4.135 7 C -0.074 4.074 8 C -0.096 4.096 9 H 0.071 0.929 10 C -0.125 4.125 11 C 0.129 3.871 12 N -0.610 5.610 13 C -0.243 4.243 14 H 0.088 0.912 15 C 0.026 3.974 16 N -0.906 5.906 17 Si 0.886 3.114 18 H -0.285 1.285 19 H -0.304 1.304 20 H -0.279 1.279 21 C 0.129 3.871 22 C -0.127 4.127 23 C 0.110 3.890 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.021 0.979 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 17.144 -5.295 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.301 3.699 3 O -0.433 6.433 4 N -0.345 5.345 5 C -0.017 4.017 6 C -0.174 4.174 7 C -0.093 4.093 8 C -0.115 4.115 9 H 0.089 0.911 10 C -0.163 4.163 11 C 0.003 3.997 12 N -0.337 5.337 13 C -0.371 4.371 14 H 0.106 0.894 15 C -0.173 4.173 16 N -0.550 5.550 17 Si 0.718 3.282 18 H -0.213 1.213 19 H -0.232 1.232 20 H -0.205 1.205 21 C 0.005 3.995 22 C -0.165 4.165 23 C -0.012 4.012 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.949 17.447 -5.292 18.469 hybrid contribution -0.922 0.232 0.691 1.175 sum -3.871 17.680 -4.601 18.674 Atomic orbital electron populations 1.21955 0.92007 1.04882 1.04648 1.20802 0.90630 0.83056 0.75401 1.90693 1.70804 1.31175 1.50662 1.48220 1.07477 1.06219 1.72606 1.21858 0.96454 0.83874 0.99506 1.22041 0.96403 1.00840 0.98072 1.21123 0.93987 0.94871 0.99317 1.22200 0.95903 0.95735 0.97676 0.91089 1.22785 0.95015 0.97808 1.00698 1.21654 0.90900 0.90830 0.96270 1.44772 1.05283 1.02586 1.81075 1.18640 0.97312 0.78628 1.42499 0.89428 1.25135 0.97518 0.95321 0.99371 1.69852 1.23616 1.14130 1.47360 0.86864 0.81600 0.78804 0.80968 1.21262 1.23203 1.20544 1.21648 0.91899 0.87936 0.98047 1.21964 1.00581 0.95441 0.98495 1.21633 0.79173 1.01890 0.98530 0.88933 0.89079 0.89799 0.90951 0.89548 0.89866 0.91490 0.90551 0.91346 0.91809 0.93540 0.96042 0.92711 0.96151 0.94331 0.91663 0.90353 0.91475 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.14 36.01 0.33 -1.02 16 2 C 0.51 6.07 7.80 -10.98 -0.09 5.98 16 3 O -0.55 -8.77 16.51 5.56 0.09 -8.68 16 4 N -0.61 -6.68 2.97 -172.77 -0.51 -7.19 16 5 C 0.11 1.00 6.17 -3.71 -0.02 0.98 16 6 C -0.14 -1.60 5.17 -26.61 -0.14 -1.74 16 7 C -0.07 -0.94 1.53 -90.58 -0.14 -1.08 16 8 C -0.10 -1.52 2.48 -88.79 -0.22 -1.74 16 9 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 10 C -0.12 -1.91 5.61 -24.58 -0.14 -2.05 16 11 C 0.13 2.53 7.23 -2.52 -0.02 2.52 16 12 N -0.61 -14.78 3.10 -170.07 -0.53 -15.31 16 13 C -0.24 -6.95 10.52 -15.06 -0.16 -7.11 16 14 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 15 C 0.03 0.75 5.42 -17.43 -0.09 0.66 16 16 N -0.91 -27.88 13.97 55.49 0.78 -27.11 16 17 Si 0.89 22.64 24.58 -169.99 -4.18 18.46 16 18 H -0.28 -6.87 6.79 56.52 0.38 -6.48 16 19 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 20 H -0.28 -7.14 7.07 56.52 0.40 -6.74 16 21 C 0.13 2.72 4.26 -3.07 -0.01 2.71 16 22 C -0.13 -1.39 5.21 -26.61 -0.14 -1.53 16 23 C 0.11 1.20 6.44 -3.71 -0.02 1.17 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.49 6.73 -51.93 -0.35 0.14 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.64 5.80 -51.93 -0.30 0.34 16 29 H 0.08 1.10 7.11 -51.93 -0.37 0.73 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 33 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.02 0.48 3.51 -51.93 -0.18 0.29 16 38 H 0.04 0.83 7.57 -51.93 -0.39 0.44 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.80 7.38 -51.93 -0.38 0.41 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -33.58 318.11 -7.41 -40.98 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.98 Total: -3.69 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.86 Total: -2.25 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.27 Total: -49.61 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.18 Total: 18.46 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.58 -7.41 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039107081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.800 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds