Wall clock time and date at job start Mon Mar 30 2020 00:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 120.00084 * 2 1 4 4 N 1.34773 * 120.00039 * 179.97438 * 2 1 3 5 5 C 1.46932 * 120.62923 * 355.71605 * 4 2 1 6 6 C 1.53188 * 108.77389 * 233.58391 * 5 4 2 7 7 C 1.53038 * 109.31781 * 305.36663 * 6 5 4 8 8 C 1.52995 * 109.46055 * 181.38691 * 7 6 5 9 9 H 1.08992 * 110.64008 * 298.30924 * 8 7 6 10 10 C 1.55160 * 110.86959 * 175.06266 * 8 7 6 11 11 C 1.54914 * 101.58175 * 206.05971 * 10 8 7 12 12 N 1.47428 * 104.82931 * 37.01417 * 11 10 8 13 13 C 1.36933 * 125.65060 * 155.91411 * 12 11 10 14 14 H 1.07998 * 119.99538 * 334.51069 * 13 12 11 15 15 C 1.38804 * 120.00444 * 154.50563 * 13 12 11 16 16 N 1.31616 * 120.00567 * 157.04616 * 15 13 12 17 17 Si 1.86800 * 119.99740 * 337.04838 * 15 13 12 18 18 H 1.48498 * 109.47336 * 85.54998 * 17 15 13 19 19 H 1.48505 * 109.47457 * 205.55178 * 17 15 13 20 20 H 1.48497 * 109.47436 * 325.55030 * 17 15 13 21 21 C 1.47027 * 108.70015 * 335.86986 * 12 11 10 22 22 C 1.53041 * 109.53747 * 61.36258 * 7 6 5 23 23 C 1.46923 * 120.63147 * 175.69438 * 4 2 1 24 24 H 1.08996 * 109.47202 * 264.73301 * 1 2 3 25 25 H 1.08998 * 109.47029 * 24.73011 * 1 2 3 26 26 H 1.09003 * 109.47210 * 144.72860 * 1 2 3 27 27 H 1.09002 * 109.58338 * 113.80001 * 5 4 2 28 28 H 1.08999 * 109.58680 * 353.37209 * 5 4 2 29 29 H 1.09000 * 109.49434 * 185.41196 * 6 5 4 30 30 H 1.09003 * 109.52358 * 65.34112 * 6 5 4 31 31 H 1.09003 * 109.45540 * 301.36101 * 7 6 5 32 32 H 1.08997 * 111.00719 * 324.14009 * 10 8 7 33 33 H 1.09003 * 111.00492 * 87.98824 * 10 8 7 34 34 H 1.09002 * 110.36612 * 155.84600 * 11 10 8 35 35 H 1.08990 * 110.36922 * 278.06516 * 11 10 8 36 36 H 0.97001 * 120.00164 * 179.97438 * 16 15 13 37 37 H 1.09007 * 109.87552 * 241.64186 * 21 12 11 38 38 H 1.08994 * 109.88144 * 120.48167 * 21 12 11 39 39 H 1.09002 * 109.49299 * 58.58822 * 22 7 6 40 40 H 1.08995 * 109.50024 * 178.68485 * 22 7 6 41 41 H 1.09006 * 109.58727 * 246.19929 * 23 4 2 42 42 H 1.08998 * 109.58885 * 6.62492 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4633 -2.4458 0.0955 6 6 2.0474 -3.2537 1.2587 7 6 3.5594 -3.3941 1.0688 8 6 4.1411 -4.2298 2.2106 9 1 3.9751 -3.7388 3.1694 10 6 5.6528 -4.4974 1.9853 11 6 5.8557 -5.8166 2.7716 12 7 4.6190 -6.5860 2.5433 13 6 4.4992 -7.9475 2.6271 14 1 5.3626 -8.5764 2.4675 15 6 3.2681 -8.5194 2.9172 16 7 3.0221 -9.7643 2.5681 17 14 1.9605 -7.5220 3.8031 18 1 1.1866 -6.7305 2.8133 19 1 1.0449 -8.4392 4.5282 20 1 2.6104 -6.6034 4.7721 21 6 3.5354 -5.6492 2.2119 22 6 4.2065 -2.0072 1.0709 23 6 3.6470 -1.1852 -0.0944 24 1 -0.3633 -0.0943 1.0233 25 1 -0.3633 0.9334 -0.4299 26 1 -0.3634 -0.8390 -0.5934 27 1 1.5848 -3.0028 -0.8335 28 1 0.4049 -2.2583 0.2760 29 1 1.5900 -4.2428 1.2804 30 1 1.8449 -2.7386 2.1978 31 1 3.7616 -3.8874 0.1180 32 1 5.8715 -4.6359 0.9265 33 1 6.2586 -3.6947 2.4059 34 1 6.7175 -6.3603 2.3844 35 1 5.9848 -5.6092 3.8337 36 1 2.1619 -10.1641 2.7712 37 1 2.7466 -5.7149 2.9613 38 1 3.1332 -5.8815 1.2259 39 1 3.9837 -1.5034 2.0115 40 1 5.2859 -2.1092 0.9590 41 1 3.9465 -1.6395 -1.0389 42 1 4.0293 -0.1659 -0.0393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039107081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:48 Heat of formation + Delta-G solvation = -41.367505 kcal Electronic energy + Delta-G solvation = -21172.646777 eV Core-core repulsion = 18151.867929 eV Total energy + Delta-G solvation = -3020.778847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27539 -39.88496 -37.99781 -35.22005 -33.94720 -32.54224 -31.51068 -30.16663 -29.50415 -26.68836 -25.19669 -24.16051 -22.40220 -21.79737 -21.00341 -19.97324 -18.97679 -18.09661 -17.59461 -16.81423 -16.46165 -16.21849 -15.61632 -15.15663 -15.03573 -14.95189 -14.38887 -14.31580 -14.21269 -14.13427 -13.72406 -13.46571 -13.05130 -13.02495 -12.89829 -12.84843 -12.53572 -12.40214 -12.19001 -12.02530 -11.75743 -11.64371 -11.39141 -11.27072 -11.06034 -10.78095 -10.67573 -9.65941 -8.97106 -8.21975 -5.50124 1.26261 1.36694 1.47440 1.60304 2.07458 2.39419 3.01981 3.36766 3.58016 3.67134 3.72176 3.86781 4.02138 4.14294 4.24632 4.36546 4.41312 4.42015 4.45727 4.51090 4.56979 4.62683 4.72390 4.80965 4.84826 4.85750 4.94418 4.95823 5.02394 5.09830 5.12074 5.17273 5.24883 5.26045 5.39641 5.56597 5.58976 5.75363 6.09799 6.42934 6.79245 7.15016 7.53544 8.14352 8.99033 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.005142 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.172157 B = 5443.840022 C = 6163.772682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.504 3.496 3 O -0.603 6.603 4 N -0.611 5.611 5 C 0.109 3.891 6 C -0.136 4.136 7 C -0.068 4.068 8 C -0.084 4.084 9 H 0.076 0.924 10 C -0.109 4.109 11 C 0.118 3.882 12 N -0.631 5.631 13 C -0.242 4.242 14 H 0.052 0.948 15 C -0.030 4.030 16 N -0.953 5.953 17 Si 0.950 3.050 18 H -0.262 1.262 19 H -0.308 1.308 20 H -0.279 1.279 21 C 0.124 3.876 22 C -0.116 4.116 23 C 0.108 3.892 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.024 0.976 36 H 0.264 0.736 37 H 0.007 0.993 38 H 0.030 0.970 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 19.538 -5.599 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.295 3.705 3 O -0.485 6.485 4 N -0.344 5.344 5 C -0.013 4.013 6 C -0.175 4.175 7 C -0.087 4.087 8 C -0.103 4.103 9 H 0.095 0.905 10 C -0.147 4.147 11 C -0.006 4.006 12 N -0.358 5.358 13 C -0.371 4.371 14 H 0.070 0.930 15 C -0.226 4.226 16 N -0.599 5.599 17 Si 0.780 3.220 18 H -0.188 1.188 19 H -0.237 1.237 20 H -0.205 1.205 21 C 0.000 4.000 22 C -0.154 4.154 23 C -0.014 4.014 24 H 0.126 0.874 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.905 19.861 -5.604 21.002 hybrid contribution -0.502 -0.575 0.766 1.082 sum -4.406 19.286 -4.837 20.365 Atomic orbital electron populations 1.21988 0.88753 1.06113 1.06063 1.21553 0.92259 0.82424 0.74263 1.90672 1.72062 1.32805 1.52963 1.48338 1.07587 1.06619 1.71827 1.21946 0.97570 0.82855 0.98949 1.22022 0.95748 1.00509 0.99184 1.21063 0.94690 0.95146 0.97792 1.22155 0.95865 0.92903 0.99424 0.90512 1.22741 0.95148 0.96121 1.00681 1.21896 0.88975 0.92551 0.97218 1.44948 1.07867 1.01738 1.81240 1.18588 0.96220 0.80888 1.41412 0.92975 1.25756 0.99979 0.96462 1.00356 1.69974 1.24522 1.16148 1.49251 0.85816 0.79038 0.77265 0.79855 1.18791 1.23689 1.20514 1.21769 0.91061 0.90331 0.96808 1.21860 1.01215 0.94017 0.98282 1.21631 0.79503 1.01220 0.99054 0.87447 0.88839 0.87451 0.89952 0.86939 0.91259 0.91513 0.90582 0.90561 0.88238 0.94001 0.95791 0.92734 0.97527 0.95210 0.92161 0.89045 0.90302 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 9.14 71.24 0.65 -1.41 16 2 C 0.50 10.80 7.80 87.66 0.68 11.49 16 3 O -0.60 -18.46 16.51 -3.04 -0.05 -18.51 16 4 N -0.61 -11.61 2.97 -818.90 -2.43 -14.05 16 5 C 0.11 1.67 6.17 86.36 0.53 2.20 16 6 C -0.14 -2.81 5.17 30.67 0.16 -2.65 16 7 C -0.07 -1.51 1.53 -10.77 -0.02 -1.53 16 8 C -0.08 -2.43 2.48 -9.61 -0.02 -2.46 16 9 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 10 C -0.11 -2.99 5.61 31.99 0.18 -2.81 16 11 C 0.12 4.50 7.23 86.86 0.63 5.13 16 12 N -0.63 -30.40 3.10 -691.99 -2.15 -32.54 16 13 C -0.24 -14.17 10.52 84.03 0.88 -13.29 16 14 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 15 C -0.03 -1.79 5.42 84.86 0.46 -1.33 16 16 N -0.95 -60.26 13.97 21.65 0.30 -59.96 16 17 Si 0.95 47.11 24.58 68.60 1.69 48.80 16 18 H -0.26 -11.85 6.79 99.48 0.68 -11.17 16 19 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 20 H -0.28 -13.65 7.07 99.48 0.70 -12.95 16 21 C 0.12 5.05 4.26 86.73 0.37 5.42 16 22 C -0.12 -2.16 5.21 30.67 0.16 -2.00 16 23 C 0.11 2.08 6.44 86.36 0.56 2.64 16 24 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.11 0.78 6.73 -2.39 -0.02 0.77 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.11 1.16 5.80 -2.39 -0.01 1.14 16 29 H 0.07 1.65 7.11 -2.39 -0.02 1.63 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 2.01 8.05 -2.39 -0.02 1.99 16 33 H 0.10 2.09 8.10 -2.39 -0.02 2.07 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 37 H 0.01 0.31 3.51 -2.38 -0.01 0.31 16 38 H 0.03 1.25 7.57 -2.39 -0.02 1.24 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.49 7.38 -2.39 -0.02 1.47 16 41 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.08 1.73 7.00 -2.39 -0.02 1.71 16 Total: -1.00 -75.12 318.11 3.53 -71.59 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.95 Total: 5.27 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.22 Total: -0.60 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -4.28 Total: -106.55 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.05 Total: -18.51 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.69 Total: 48.80 kcal Total: -75.12 3.53 -71.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039107081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.219 kcal (2) G-P(sol) polarization free energy of solvation -75.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds