Wall clock time and date at job start Mon Mar 30 2020 00:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99803 * 2 1 4 4 N 1.34777 * 119.99675 * 180.27875 * 2 1 3 5 5 C 1.46921 * 120.63392 * 359.43977 * 4 2 1 6 6 C 1.53624 * 108.54016 * 126.36873 * 5 4 2 7 7 C 1.53041 * 109.23819 * 54.86424 * 6 5 4 8 8 C 1.53004 * 109.45947 * 178.48679 * 7 6 5 9 9 H 1.09007 * 110.88783 * 56.18414 * 8 7 6 10 10 C 1.55156 * 111.00623 * 180.02562 * 8 7 6 11 11 C 1.54323 * 102.94392 * 153.57903 * 10 8 7 12 12 N 1.47030 * 107.26845 * 337.80628 * 11 10 8 13 13 C 1.36931 * 125.64497 * 178.89940 * 12 11 10 14 14 H 1.08000 * 119.99984 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00431 * 0.02562 * 13 12 11 16 16 N 1.31623 * 119.99568 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00077 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47202 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46991 * 120.00828 * 17 15 13 20 20 H 1.48503 * 109.46961 * 240.00473 * 17 15 13 21 21 C 1.47426 * 108.70447 * 358.94396 * 12 11 10 22 22 C 1.53037 * 109.53606 * 298.50541 * 7 6 5 23 23 C 1.46924 * 120.62813 * 179.72946 * 4 2 1 24 24 H 1.09004 * 109.46983 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.47352 * 119.99681 * 1 2 3 26 26 H 1.08998 * 109.47585 * 239.99969 * 1 2 3 27 27 H 1.09000 * 109.59076 * 246.20663 * 5 4 2 28 28 H 1.09000 * 109.58577 * 6.63206 * 5 4 2 29 29 H 1.08990 * 109.63928 * 294.86618 * 6 5 4 30 30 H 1.09008 * 109.43003 * 174.72634 * 6 5 4 31 31 H 1.08996 * 109.45315 * 58.52100 * 7 6 5 32 32 H 1.09005 * 110.71994 * 271.93937 * 10 8 7 33 33 H 1.08993 * 110.71955 * 35.21415 * 10 8 7 34 34 H 1.08996 * 109.88160 * 97.22242 * 11 10 8 35 35 H 1.08994 * 109.87936 * 218.39332 * 11 10 8 36 36 H 0.97005 * 119.99312 * 179.97438 * 16 15 13 37 37 H 1.09004 * 110.36295 * 265.29183 * 21 12 11 38 38 H 1.08990 * 110.36914 * 142.96641 * 21 12 11 39 39 H 1.09008 * 109.50055 * 301.41274 * 22 7 6 40 40 H 1.08995 * 109.52388 * 181.33998 * 22 7 6 41 41 H 1.09006 * 109.58932 * 353.36359 * 23 4 2 42 42 H 1.08998 * 109.59450 * 113.65039 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0057 5 6 1.4603 -2.4476 0.0005 6 6 1.9635 -3.2969 -1.1766 7 6 3.4853 -3.4321 -1.0867 8 6 3.9879 -4.3086 -2.2357 9 1 3.6734 -3.9055 -3.1984 10 6 5.5300 -4.4703 -2.1784 11 6 5.7622 -5.8227 -2.8845 12 7 4.5036 -6.5785 -2.8048 13 6 4.2856 -7.8234 -3.3319 14 1 3.3210 -8.2960 -3.2195 15 6 5.3043 -8.4779 -4.0107 16 7 6.4800 -7.9021 -4.1473 17 14 5.0065 -10.1758 -4.7304 18 1 3.6122 -10.5979 -4.4425 19 1 5.2175 -10.1345 -6.1998 20 1 5.9532 -11.1444 -4.1215 21 6 3.5149 -5.7738 -2.0643 22 6 4.1287 -2.0469 -1.1830 23 6 3.6500 -1.1834 -0.0117 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5138 -0.8901 26 1 -0.3634 -0.5138 0.8899 27 1 1.6501 -2.9693 0.9385 28 1 0.3912 -2.2658 -0.1091 29 1 1.6960 -2.8149 -2.1169 30 1 1.5071 -4.2858 -1.1315 31 1 3.7533 -3.8916 -0.1354 32 1 6.0228 -3.6628 -2.7200 33 1 5.8754 -4.5103 -1.1454 34 1 6.0285 -5.6550 -3.9281 35 1 6.5572 -6.3722 -2.3805 36 1 7.1919 -8.3596 -4.6213 37 1 3.5133 -6.0510 -1.0101 38 1 2.5216 -5.9044 -2.4933 39 1 3.8408 -1.5766 -2.1233 40 1 5.2134 -2.1455 -1.1429 41 1 4.0262 -0.1671 -0.1294 42 1 4.0148 -1.6017 0.9264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039107082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:51 Heat of formation + Delta-G solvation = -25.487830 kcal Electronic energy + Delta-G solvation = -20854.210484 eV Core-core repulsion = 17834.120232 eV Total energy + Delta-G solvation = -3020.090253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29571 -38.38463 -36.58909 -33.77710 -32.00810 -31.47117 -29.84074 -28.88391 -27.63291 -25.11926 -23.76352 -23.13133 -21.08066 -19.87956 -19.51740 -19.08574 -17.21757 -16.79295 -15.95463 -15.63839 -14.95571 -14.48152 -14.25413 -14.04805 -13.98431 -13.42856 -13.39002 -12.90453 -12.69185 -12.40817 -12.33004 -12.12354 -11.99728 -11.73474 -11.33133 -11.07483 -10.97750 -10.87017 -10.70598 -10.52800 -10.06768 -9.99517 -9.81688 -9.78456 -9.67824 -9.56919 -8.74031 -8.58061 -6.79403 -5.68946 -3.02059 2.48307 2.89094 3.40211 3.45415 3.48113 4.40377 4.50922 4.63933 4.81498 4.85363 4.96841 5.05383 5.12096 5.18988 5.25603 5.42795 5.50567 5.52213 5.57170 5.68767 5.70632 5.73596 5.88316 5.88826 5.95198 6.05318 6.17791 6.20730 6.35357 6.45432 6.47518 6.59117 6.63315 6.79463 7.02333 7.27439 7.59403 7.67987 7.86026 8.02593 8.29312 9.25009 9.85869 10.52653 11.42772 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.047193 B = 0.003778 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.164058 B = 7408.759307 C = 7840.287854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.554 6.554 4 N -0.611 5.611 5 C 0.106 3.894 6 C -0.130 4.130 7 C -0.074 4.074 8 C -0.096 4.096 9 H 0.071 0.929 10 C -0.138 4.138 11 C 0.177 3.823 12 N -0.608 5.608 13 C -0.227 4.227 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.922 5.922 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.143 3.857 22 C -0.127 4.127 23 C 0.110 3.890 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.251 0.749 37 H 0.016 0.984 38 H 0.034 0.966 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 12.446 8.838 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.433 6.433 4 N -0.345 5.345 5 C -0.017 4.017 6 C -0.168 4.168 7 C -0.093 4.093 8 C -0.116 4.116 9 H 0.089 0.911 10 C -0.177 4.177 11 C 0.052 3.948 12 N -0.334 5.334 13 C -0.355 4.355 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.570 5.570 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.017 3.983 22 C -0.165 4.165 23 C -0.012 4.012 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.794 12.829 8.715 18.343 hybrid contribution -0.055 -1.112 -0.463 1.206 sum -9.850 11.717 8.252 17.390 Atomic orbital electron populations 1.21940 0.92038 1.05220 1.04138 1.20801 0.90618 0.83093 0.75535 1.90698 1.70844 1.31166 1.50574 1.48208 1.07267 1.06079 1.72925 1.21933 0.96463 0.83805 0.99493 1.22071 0.96664 1.00204 0.97907 1.21094 0.93904 0.94807 0.99473 1.22356 0.96406 0.95682 0.97134 0.91082 1.22901 0.94717 0.99862 1.00188 1.21129 0.88593 0.86849 0.98207 1.44508 1.08669 1.16393 1.63818 1.19110 0.97438 0.91116 1.27876 0.90490 1.24807 0.95969 0.98802 1.01040 1.69993 1.02722 1.37399 1.46852 0.86058 0.77287 0.83897 0.78617 1.20535 1.21797 1.21790 1.21553 0.93094 0.88957 0.94731 1.21967 1.01106 0.95318 0.98141 1.21648 0.79079 1.01792 0.98726 0.89204 0.89314 0.89478 0.91122 0.89754 0.91489 0.90120 0.91033 0.92494 0.92651 0.93831 0.94220 0.93887 0.96640 0.94730 0.91687 0.90285 0.89295 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 8.67 36.01 0.31 -0.95 16 2 C 0.51 5.95 7.81 -10.98 -0.09 5.87 16 3 O -0.55 -8.78 16.50 5.55 0.09 -8.69 16 4 N -0.61 -6.52 2.97 -172.51 -0.51 -7.03 16 5 C 0.11 0.90 6.37 -3.49 -0.02 0.87 16 6 C -0.13 -1.36 5.26 -26.39 -0.14 -1.50 16 7 C -0.07 -0.92 1.67 -90.58 -0.15 -1.07 16 8 C -0.10 -1.58 2.56 -88.47 -0.23 -1.81 16 9 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 10 C -0.14 -2.52 5.27 -24.90 -0.13 -2.65 16 11 C 0.18 4.32 5.37 -3.06 -0.02 4.31 16 12 N -0.61 -15.57 3.39 -170.07 -0.58 -16.15 16 13 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 14 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 15 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -27.37 10.31 55.49 0.57 -26.80 16 17 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 C 0.14 2.85 5.94 -2.53 -0.02 2.84 16 22 C -0.13 -1.49 5.16 -26.61 -0.14 -1.62 16 23 C 0.11 1.23 6.43 -3.71 -0.02 1.20 16 24 H 0.09 0.65 8.12 -51.93 -0.42 0.22 16 25 H 0.09 0.52 7.70 -51.92 -0.40 0.12 16 26 H 0.09 0.46 7.93 -51.93 -0.41 0.05 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.52 5.93 -51.93 -0.31 0.22 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.84 7.45 -51.92 -0.39 0.45 16 31 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.04 1.19 7.38 -51.93 -0.38 0.80 16 35 H 0.04 1.08 7.51 -51.93 -0.39 0.69 16 36 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.02 0.31 7.98 -51.93 -0.41 -0.10 16 38 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 39 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.08 0.92 7.21 -51.93 -0.37 0.54 16 41 H 0.09 1.10 7.01 -51.93 -0.36 0.74 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -33.07 323.65 -8.65 -41.72 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -7.19 Total: -3.67 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.89 Total: -1.42 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.52 Total: -49.98 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.07 -8.65 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039107082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.228 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds