Wall clock time and date at job start Mon Mar 30 2020 00:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99803 * 2 1 4 4 N 1.34777 * 119.99675 * 180.27875 * 2 1 3 5 5 C 1.46921 * 120.63392 * 359.43977 * 4 2 1 6 6 C 1.53624 * 108.54016 * 126.36873 * 5 4 2 7 7 C 1.53041 * 109.23819 * 54.86424 * 6 5 4 8 8 C 1.53004 * 109.45947 * 178.48679 * 7 6 5 9 9 H 1.09007 * 110.88783 * 56.18414 * 8 7 6 10 10 C 1.55156 * 111.00623 * 180.02562 * 8 7 6 11 11 C 1.54323 * 102.94392 * 153.57903 * 10 8 7 12 12 N 1.47030 * 107.26845 * 337.80628 * 11 10 8 13 13 C 1.36931 * 125.64497 * 178.89940 * 12 11 10 14 14 H 1.08000 * 119.99984 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00431 * 0.02562 * 13 12 11 16 16 N 1.31623 * 119.99568 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00077 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47202 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46991 * 120.00828 * 17 15 13 20 20 H 1.48503 * 109.46961 * 240.00473 * 17 15 13 21 21 C 1.47426 * 108.70447 * 358.94396 * 12 11 10 22 22 C 1.53037 * 109.53606 * 298.50541 * 7 6 5 23 23 C 1.46924 * 120.62813 * 179.72946 * 4 2 1 24 24 H 1.09004 * 109.46983 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.47352 * 119.99681 * 1 2 3 26 26 H 1.08998 * 109.47585 * 239.99969 * 1 2 3 27 27 H 1.09000 * 109.59076 * 246.20663 * 5 4 2 28 28 H 1.09000 * 109.58577 * 6.63206 * 5 4 2 29 29 H 1.08990 * 109.63928 * 294.86618 * 6 5 4 30 30 H 1.09008 * 109.43003 * 174.72634 * 6 5 4 31 31 H 1.08996 * 109.45315 * 58.52100 * 7 6 5 32 32 H 1.09005 * 110.71994 * 271.93937 * 10 8 7 33 33 H 1.08993 * 110.71955 * 35.21415 * 10 8 7 34 34 H 1.08996 * 109.88160 * 97.22242 * 11 10 8 35 35 H 1.08994 * 109.87936 * 218.39332 * 11 10 8 36 36 H 0.97005 * 119.99312 * 179.97438 * 16 15 13 37 37 H 1.09004 * 110.36295 * 265.29183 * 21 12 11 38 38 H 1.08990 * 110.36914 * 142.96641 * 21 12 11 39 39 H 1.09008 * 109.50055 * 301.41274 * 22 7 6 40 40 H 1.08995 * 109.52388 * 181.33998 * 22 7 6 41 41 H 1.09006 * 109.58932 * 353.36359 * 23 4 2 42 42 H 1.08998 * 109.59450 * 113.65039 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0057 5 6 1.4603 -2.4476 0.0005 6 6 1.9635 -3.2969 -1.1766 7 6 3.4853 -3.4321 -1.0867 8 6 3.9879 -4.3086 -2.2357 9 1 3.6734 -3.9055 -3.1984 10 6 5.5300 -4.4703 -2.1784 11 6 5.7622 -5.8227 -2.8845 12 7 4.5036 -6.5785 -2.8048 13 6 4.2856 -7.8234 -3.3319 14 1 3.3210 -8.2960 -3.2195 15 6 5.3043 -8.4779 -4.0107 16 7 6.4800 -7.9021 -4.1473 17 14 5.0065 -10.1758 -4.7304 18 1 3.6122 -10.5979 -4.4425 19 1 5.2175 -10.1345 -6.1998 20 1 5.9532 -11.1444 -4.1215 21 6 3.5149 -5.7738 -2.0643 22 6 4.1287 -2.0469 -1.1830 23 6 3.6500 -1.1834 -0.0117 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5138 -0.8901 26 1 -0.3634 -0.5138 0.8899 27 1 1.6501 -2.9693 0.9385 28 1 0.3912 -2.2658 -0.1091 29 1 1.6960 -2.8149 -2.1169 30 1 1.5071 -4.2858 -1.1315 31 1 3.7533 -3.8916 -0.1354 32 1 6.0228 -3.6628 -2.7200 33 1 5.8754 -4.5103 -1.1454 34 1 6.0285 -5.6550 -3.9281 35 1 6.5572 -6.3722 -2.3805 36 1 7.1919 -8.3596 -4.6213 37 1 3.5133 -6.0510 -1.0101 38 1 2.5216 -5.9044 -2.4933 39 1 3.8408 -1.5766 -2.1233 40 1 5.2134 -2.1455 -1.1429 41 1 4.0262 -0.1671 -0.1294 42 1 4.0148 -1.6017 0.9264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039107082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:51 Heat of formation + Delta-G solvation = -46.106196 kcal Electronic energy + Delta-G solvation = -20855.104564 eV Core-core repulsion = 17834.120232 eV Total energy + Delta-G solvation = -3020.984332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19761 -39.69272 -37.89080 -35.22068 -33.56598 -32.40786 -31.19246 -30.08293 -29.09548 -26.78174 -25.05806 -24.13523 -22.12736 -21.73283 -20.85106 -19.93508 -18.82538 -18.05333 -16.80369 -16.76453 -16.54278 -16.11495 -15.71633 -15.19456 -14.92693 -14.53881 -14.29787 -14.10861 -13.85278 -13.82551 -13.49987 -13.41288 -12.97932 -12.94778 -12.88498 -12.74471 -12.30392 -12.17028 -12.10992 -11.94779 -11.80607 -11.61312 -11.33411 -11.16138 -11.02339 -10.74631 -10.70561 -9.61565 -8.87177 -7.83969 -5.19231 1.45595 1.46773 1.57154 1.64717 2.11953 2.50353 3.34260 3.61267 3.70217 3.74114 3.87051 3.98677 4.17853 4.21156 4.33533 4.43469 4.46070 4.48815 4.53732 4.63396 4.68701 4.74264 4.85096 4.87283 4.93659 4.98515 5.02967 5.07280 5.11268 5.15871 5.24259 5.30980 5.43845 5.47892 5.60737 5.64028 5.71201 5.80164 6.21814 6.48245 7.11790 7.19214 7.80848 8.45670 9.26788 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.047193 B = 0.003778 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.164058 B = 7408.759307 C = 7840.287854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.501 3.499 3 O -0.607 6.607 4 N -0.611 5.611 5 C 0.108 3.892 6 C -0.128 4.128 7 C -0.064 4.064 8 C -0.079 4.079 9 H 0.063 0.937 10 C -0.124 4.124 11 C 0.183 3.817 12 N -0.632 5.632 13 C -0.240 4.240 14 H 0.085 0.915 15 C -0.072 4.072 16 N -0.954 5.954 17 Si 0.979 3.021 18 H -0.263 1.263 19 H -0.293 1.293 20 H -0.293 1.293 21 C 0.139 3.861 22 C -0.120 4.120 23 C 0.111 3.889 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.004 0.996 35 H 0.001 0.999 36 H 0.245 0.755 37 H 0.027 0.973 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.659 12.532 10.067 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.292 3.708 3 O -0.489 6.489 4 N -0.344 5.344 5 C -0.014 4.014 6 C -0.166 4.166 7 C -0.083 4.083 8 C -0.098 4.098 9 H 0.082 0.918 10 C -0.162 4.162 11 C 0.058 3.942 12 N -0.358 5.358 13 C -0.369 4.369 14 H 0.102 0.898 15 C -0.264 4.264 16 N -0.604 5.604 17 Si 0.807 3.193 18 H -0.187 1.187 19 H -0.221 1.221 20 H -0.220 1.220 21 C 0.014 3.986 22 C -0.158 4.158 23 C -0.012 4.012 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.132 0.868 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.022 0.978 35 H 0.019 0.981 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.273 12.905 9.967 20.409 hybrid contribution 0.701 -1.154 -0.839 1.590 sum -11.572 11.752 9.127 18.850 Atomic orbital electron populations 1.21968 0.88427 1.05937 1.06270 1.21635 0.92400 0.82422 0.74327 1.90676 1.72196 1.32993 1.53046 1.48348 1.07065 1.06854 1.72098 1.22100 0.97853 0.82310 0.99107 1.22043 0.94807 1.00977 0.98802 1.21006 0.95603 0.94092 0.97641 1.22231 0.94603 0.94322 0.98656 0.91829 1.22762 0.96586 0.96471 1.00415 1.20896 0.87640 0.89524 0.96156 1.44873 1.10294 1.16474 1.64193 1.19550 0.97648 0.92337 1.27381 0.89767 1.25693 0.95894 1.02736 1.02080 1.70231 1.03494 1.38807 1.47833 0.85000 0.77821 0.79229 0.77247 1.18672 1.22066 1.22021 1.21772 0.92252 0.90155 0.94395 1.21871 1.01117 0.94812 0.97988 1.21564 0.79941 1.00713 0.98950 0.89412 0.87337 0.86820 0.89682 0.86698 0.91894 0.89600 0.90394 0.90919 0.91032 0.97803 0.98109 0.94599 0.95556 0.93972 0.92663 0.90253 0.90986 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 8.67 71.24 0.62 -1.23 16 2 C 0.50 10.66 7.81 87.66 0.68 11.34 16 3 O -0.61 -18.97 16.50 -3.04 -0.05 -19.02 16 4 N -0.61 -11.37 2.97 -818.07 -2.43 -13.79 16 5 C 0.11 1.37 6.37 86.51 0.55 1.93 16 6 C -0.13 -2.23 5.26 30.82 0.16 -2.06 16 7 C -0.06 -1.43 1.67 -10.77 -0.02 -1.45 16 8 C -0.08 -2.46 2.56 -9.40 -0.02 -2.49 16 9 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 10 C -0.12 -4.44 5.27 31.78 0.17 -4.27 16 11 C 0.18 9.23 5.37 86.73 0.47 9.70 16 12 N -0.63 -32.69 3.39 -691.99 -2.35 -35.04 16 13 C -0.24 -13.57 10.28 84.03 0.86 -12.71 16 14 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 15 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 16 N -0.95 -58.75 10.31 21.65 0.22 -58.52 16 17 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 C 0.14 5.35 5.94 86.86 0.52 5.87 16 22 C -0.12 -2.56 5.16 30.67 0.16 -2.40 16 23 C 0.11 2.28 6.43 86.36 0.56 2.84 16 24 H 0.09 1.04 8.12 -2.38 -0.02 1.02 16 25 H 0.11 0.80 7.70 -2.38 -0.02 0.78 16 26 H 0.11 0.68 7.93 -2.39 -0.02 0.66 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 0.82 5.93 -2.39 -0.01 0.80 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.45 7.45 -2.38 -0.02 1.43 16 31 H 0.08 1.70 8.07 -2.39 -0.02 1.68 16 32 H 0.07 2.37 8.09 -2.38 -0.02 2.35 16 33 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 34 H 0.00 0.21 7.38 -2.39 -0.02 0.20 16 35 H 0.00 0.04 7.51 -2.39 -0.02 0.02 16 36 H 0.24 14.63 8.31 -92.70 -0.77 13.86 16 37 H 0.03 0.98 7.98 -2.39 -0.02 0.96 16 38 H 0.04 1.56 8.05 -2.39 -0.02 1.54 16 39 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 1.69 7.21 -2.39 -0.02 1.68 16 41 H 0.07 1.76 7.01 -2.38 -0.02 1.74 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -75.07 323.65 3.57 -71.50 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 0.98 Total: 5.31 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.16 Total: 1.38 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -4.55 Total: -107.35 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.05 Total: -19.02 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -75.07 3.57 -71.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039107082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.394 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds