Wall clock time and date at job start Mon Mar 30 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 119.99893 * 2 1 4 4 N 1.34777 * 119.99961 * 180.02562 * 2 1 3 5 5 C 1.46923 * 120.62765 * 4.94248 * 4 2 1 6 6 C 1.53193 * 108.77282 * 233.62547 * 5 4 2 7 7 C 1.53038 * 109.31662 * 305.36795 * 6 5 4 8 8 C 1.53040 * 109.53865 * 61.36245 * 7 6 5 9 9 C 1.46921 * 120.62960 * 184.95717 * 4 2 1 10 10 H 1.08997 * 109.70984 * 246.22425 * 9 4 2 11 11 C 1.52997 * 109.58789 * 6.58974 * 9 4 2 12 12 H 1.08999 * 110.64090 * 40.29694 * 11 9 4 13 13 C 1.55159 * 110.71759 * 276.96450 * 11 9 4 14 14 C 1.54914 * 101.58332 * 206.13218 * 13 11 9 15 15 N 1.47426 * 104.82885 * 37.01304 * 14 13 11 16 16 C 1.36937 * 125.65011 * 156.13892 * 15 14 13 17 17 H 1.07992 * 120.00400 * 179.68729 * 16 15 14 18 18 C 1.38814 * 119.99811 * 359.68741 * 16 15 14 19 19 N 1.31627 * 119.99876 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47456 * 89.99765 * 20 18 16 22 22 H 1.48501 * 109.46852 * 209.99670 * 20 18 16 23 23 H 1.48503 * 109.47355 * 329.99311 * 20 18 16 24 24 C 1.47021 * 108.70432 * 335.86853 * 15 14 13 25 25 H 1.08996 * 109.47104 * 239.99631 * 1 2 3 26 26 H 1.09002 * 109.47409 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47556 * 119.99702 * 1 2 3 28 28 H 1.09008 * 109.58744 * 113.84229 * 5 4 2 29 29 H 1.08998 * 109.58947 * 353.41684 * 5 4 2 30 30 H 1.08997 * 109.49917 * 185.41098 * 6 5 4 31 31 H 1.09003 * 109.49704 * 65.32074 * 6 5 4 32 32 H 1.08995 * 109.45927 * 301.34704 * 7 6 5 33 33 H 1.08996 * 109.46119 * 181.38294 * 7 6 5 34 34 H 1.08997 * 109.50483 * 178.68469 * 8 7 6 35 35 H 1.09004 * 109.52630 * 58.60177 * 8 7 6 36 36 H 1.08997 * 111.00381 * 324.20698 * 13 11 9 37 37 H 1.09007 * 111.00712 * 88.02218 * 13 11 9 38 38 H 1.08996 * 110.36767 * 278.16931 * 14 13 11 39 39 H 1.08998 * 110.36411 * 155.84802 * 14 13 11 40 40 H 0.96994 * 119.99707 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.88710 * 120.47813 * 24 15 14 42 42 H 1.09002 * 109.88369 * 241.65008 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4643 -2.4452 -0.1100 6 6 1.8849 -3.3476 1.0543 7 6 3.4094 -3.4808 1.0663 8 6 4.0421 -2.1023 1.2707 9 6 3.6459 -1.1858 0.1087 10 1 4.0789 -1.5627 -0.8179 11 6 4.1584 0.2310 0.3753 12 1 3.5066 0.7493 1.0786 13 6 4.2856 1.0272 -0.9503 14 6 5.3860 2.0565 -0.5905 15 7 6.3260 1.3179 0.2722 16 6 7.6461 1.6278 0.4631 17 1 8.2526 1.0246 1.1223 18 6 8.2047 2.7174 -0.1908 19 7 7.4657 3.4524 -0.9947 20 14 10.0056 3.1399 0.0690 21 1 10.8316 2.4272 -0.9384 22 1 10.1970 4.6049 -0.0810 23 1 10.4200 2.7236 1.4329 24 6 5.6098 0.1972 0.8988 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.7172 -2.9262 -1.0550 29 1 0.3900 -2.2668 -0.0645 30 1 1.4346 -4.3326 0.9322 31 1 1.5507 -2.9083 1.9942 32 1 3.7451 -3.8971 0.1166 33 1 3.7098 -4.1422 1.8790 34 1 5.1271 -2.2009 1.3025 35 1 3.6880 -1.6743 2.2086 36 1 4.6079 0.3796 -1.7656 37 1 3.3487 1.5264 -1.1977 38 1 4.9553 2.8985 -0.0488 39 1 5.8909 2.4028 -1.4923 40 1 7.8559 4.2140 -1.4512 41 1 6.0817 -0.7456 0.6221 42 1 5.6156 0.3131 1.9826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039174754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:42 Heat of formation + Delta-G solvation = 12.641658 kcal Electronic energy + Delta-G solvation = -21754.994347 eV Core-core repulsion = 18736.557513 eV Total energy + Delta-G solvation = -3018.436834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54994 -37.34186 -36.81339 -33.24999 -32.76835 -31.09455 -29.56087 -28.75509 -27.06405 -24.82115 -24.36356 -22.69440 -21.08023 -19.69313 -19.54216 -18.95511 -16.80847 -16.38338 -16.00725 -15.24366 -14.73447 -14.56032 -14.18585 -13.99439 -13.73019 -13.49614 -13.24982 -12.80741 -12.51727 -12.31171 -12.23837 -11.96823 -11.64256 -11.31820 -11.17419 -11.09281 -10.87211 -10.76966 -10.66972 -10.63281 -10.03761 -9.82356 -9.62611 -9.45059 -9.21254 -8.64776 -8.43435 -8.27312 -6.62467 -5.47546 -2.89330 2.82288 3.12196 3.48375 3.52523 3.55257 4.56658 4.62860 4.66400 4.76626 4.91878 5.06677 5.15815 5.26265 5.30460 5.32664 5.45114 5.59735 5.64318 5.67893 5.74542 5.80610 5.87127 5.92128 6.04841 6.10707 6.19052 6.20761 6.38305 6.52486 6.66624 6.69119 6.90590 7.09352 7.23701 7.37276 7.61663 7.76509 7.88798 8.09140 8.51069 8.57365 9.40008 10.01618 10.69667 11.55101 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031058 B = 0.005303 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.318123 B = 5279.235667 C = 5987.995256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.493 3.507 3 O -0.506 6.506 4 N -0.611 5.611 5 C 0.108 3.892 6 C -0.135 4.135 7 C -0.120 4.120 8 C -0.133 4.133 9 C 0.159 3.841 10 H 0.068 0.932 11 C -0.090 4.090 12 H 0.097 0.903 13 C -0.129 4.129 14 C 0.155 3.845 15 N -0.605 5.605 16 C -0.219 4.219 17 H 0.074 0.926 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.137 3.863 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.008 0.992 39 H 0.099 0.901 40 H 0.250 0.750 41 H 0.018 0.982 42 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.855 -14.749 2.056 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.282 3.718 3 O -0.382 6.382 4 N -0.346 5.346 5 C -0.015 4.015 6 C -0.173 4.173 7 C -0.158 4.158 8 C -0.171 4.171 9 C 0.057 3.943 10 H 0.086 0.914 11 C -0.109 4.109 12 H 0.115 0.885 13 C -0.167 4.167 14 C 0.030 3.970 15 N -0.331 5.331 16 C -0.347 4.347 17 H 0.092 0.908 18 C -0.210 4.210 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.011 3.989 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.026 0.974 39 H 0.117 0.883 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -15.378 -14.009 1.993 20.897 hybrid contribution 0.891 0.022 0.220 0.918 sum -14.487 -13.987 2.213 20.258 Atomic orbital electron populations 1.21984 0.93025 1.04998 1.03326 1.20725 0.90028 0.83736 0.77324 1.90826 1.68572 1.31779 1.47029 1.48129 1.07270 1.05614 1.73583 1.21696 0.96787 0.84446 0.98554 1.21922 0.96969 0.99472 0.98944 1.21535 0.94755 0.97508 1.01989 1.22074 1.01630 0.94547 0.98895 1.21339 0.78200 0.97179 0.97611 0.91448 1.22568 0.95638 0.92241 1.00459 0.88490 1.23302 1.00208 0.98772 0.94420 1.21876 0.87637 0.90840 0.96648 1.44565 1.06797 1.29871 1.51863 1.19088 0.84475 1.09166 1.22006 0.90764 1.24786 0.98137 0.98017 1.00011 1.69866 1.33866 1.19910 1.33384 0.86106 0.84745 0.77330 0.77547 1.21748 1.21748 1.20862 1.21457 0.90941 0.91557 0.94968 0.90028 0.89283 0.90068 0.91570 0.89898 0.91071 0.91566 0.91879 0.91850 0.89992 0.91605 0.94241 0.89895 0.97395 0.88305 0.93962 0.96433 0.96831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.67 36.01 0.31 -1.28 16 2 C 0.49 6.96 7.55 -10.99 -0.08 6.87 16 3 O -0.51 -9.53 10.07 5.56 0.06 -9.47 16 4 N -0.61 -7.84 2.97 -165.22 -0.49 -8.33 16 5 C 0.11 0.93 6.35 -3.71 -0.02 0.91 16 6 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 7 C -0.12 -1.17 5.88 -26.69 -0.16 -1.32 16 8 C -0.13 -1.74 4.70 -26.61 -0.13 -1.87 16 9 C 0.16 2.45 2.61 -67.60 -0.18 2.28 16 10 H 0.07 1.09 7.75 -51.93 -0.40 0.68 16 11 C -0.09 -1.81 1.92 -88.78 -0.17 -1.98 16 12 H 0.10 2.10 5.86 -52.03 -0.30 1.80 16 13 C -0.13 -2.91 5.80 -24.58 -0.14 -3.05 16 14 C 0.15 4.26 5.89 -2.53 -0.01 4.24 16 15 N -0.61 -17.02 3.39 -170.07 -0.58 -17.60 16 16 C -0.22 -6.53 10.27 -15.06 -0.15 -6.68 16 17 H 0.07 2.13 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.43 5.49 -17.43 -0.10 -0.53 16 19 N -0.92 -28.73 10.09 55.49 0.56 -28.17 16 20 Si 0.91 23.18 29.55 -169.99 -5.02 18.16 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.14 3.15 5.85 -3.06 -0.02 3.13 16 25 H 0.08 0.59 7.90 -51.93 -0.41 0.18 16 26 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 27 H 0.08 0.58 7.74 -51.93 -0.40 0.17 16 28 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 29 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.14 6.45 -51.93 -0.33 0.81 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.87 7.78 -51.93 -0.40 0.47 16 37 H 0.08 1.87 5.56 -52.05 -0.29 1.58 16 38 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.10 3.00 5.87 -51.93 -0.30 2.69 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.02 0.39 6.47 -51.93 -0.34 0.06 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 311.17 15.07 4.69 4.69 Total: -1.00 -34.39 311.17 -8.64 -43.04 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.85 Total: -1.81 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.01 Total: -0.51 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.51 Total: -54.10 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.06 Total: -9.47 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.39 -8.64 -43.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039174754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.680 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds