Wall clock time and date at job start Mon Mar 30 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 119.99893 * 2 1 4 4 N 1.34777 * 119.99961 * 180.02562 * 2 1 3 5 5 C 1.46923 * 120.62765 * 4.94248 * 4 2 1 6 6 C 1.53193 * 108.77282 * 233.62547 * 5 4 2 7 7 C 1.53038 * 109.31662 * 305.36795 * 6 5 4 8 8 C 1.53040 * 109.53865 * 61.36245 * 7 6 5 9 9 C 1.46921 * 120.62960 * 184.95717 * 4 2 1 10 10 H 1.08997 * 109.70984 * 246.22425 * 9 4 2 11 11 C 1.52997 * 109.58789 * 6.58974 * 9 4 2 12 12 H 1.08999 * 110.64090 * 40.29694 * 11 9 4 13 13 C 1.55159 * 110.71759 * 276.96450 * 11 9 4 14 14 C 1.54914 * 101.58332 * 206.13218 * 13 11 9 15 15 N 1.47426 * 104.82885 * 37.01304 * 14 13 11 16 16 C 1.36937 * 125.65011 * 156.13892 * 15 14 13 17 17 H 1.07992 * 120.00400 * 179.68729 * 16 15 14 18 18 C 1.38814 * 119.99811 * 359.68741 * 16 15 14 19 19 N 1.31627 * 119.99876 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47456 * 89.99765 * 20 18 16 22 22 H 1.48501 * 109.46852 * 209.99670 * 20 18 16 23 23 H 1.48503 * 109.47355 * 329.99311 * 20 18 16 24 24 C 1.47021 * 108.70432 * 335.86853 * 15 14 13 25 25 H 1.08996 * 109.47104 * 239.99631 * 1 2 3 26 26 H 1.09002 * 109.47409 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47556 * 119.99702 * 1 2 3 28 28 H 1.09008 * 109.58744 * 113.84229 * 5 4 2 29 29 H 1.08998 * 109.58947 * 353.41684 * 5 4 2 30 30 H 1.08997 * 109.49917 * 185.41098 * 6 5 4 31 31 H 1.09003 * 109.49704 * 65.32074 * 6 5 4 32 32 H 1.08995 * 109.45927 * 301.34704 * 7 6 5 33 33 H 1.08996 * 109.46119 * 181.38294 * 7 6 5 34 34 H 1.08997 * 109.50483 * 178.68469 * 8 7 6 35 35 H 1.09004 * 109.52630 * 58.60177 * 8 7 6 36 36 H 1.08997 * 111.00381 * 324.20698 * 13 11 9 37 37 H 1.09007 * 111.00712 * 88.02218 * 13 11 9 38 38 H 1.08996 * 110.36767 * 278.16931 * 14 13 11 39 39 H 1.08998 * 110.36411 * 155.84802 * 14 13 11 40 40 H 0.96994 * 119.99707 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.88710 * 120.47813 * 24 15 14 42 42 H 1.09002 * 109.88369 * 241.65008 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4643 -2.4452 -0.1100 6 6 1.8849 -3.3476 1.0543 7 6 3.4094 -3.4808 1.0663 8 6 4.0421 -2.1023 1.2707 9 6 3.6459 -1.1858 0.1087 10 1 4.0789 -1.5627 -0.8179 11 6 4.1584 0.2310 0.3753 12 1 3.5066 0.7493 1.0786 13 6 4.2856 1.0272 -0.9503 14 6 5.3860 2.0565 -0.5905 15 7 6.3260 1.3179 0.2722 16 6 7.6461 1.6278 0.4631 17 1 8.2526 1.0246 1.1223 18 6 8.2047 2.7174 -0.1908 19 7 7.4657 3.4524 -0.9947 20 14 10.0056 3.1399 0.0690 21 1 10.8316 2.4272 -0.9384 22 1 10.1970 4.6049 -0.0810 23 1 10.4200 2.7236 1.4329 24 6 5.6098 0.1972 0.8988 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.7172 -2.9262 -1.0550 29 1 0.3900 -2.2668 -0.0645 30 1 1.4346 -4.3326 0.9322 31 1 1.5507 -2.9083 1.9942 32 1 3.7451 -3.8971 0.1166 33 1 3.7098 -4.1422 1.8790 34 1 5.1271 -2.2009 1.3025 35 1 3.6880 -1.6743 2.2086 36 1 4.6079 0.3796 -1.7656 37 1 3.3487 1.5264 -1.1977 38 1 4.9553 2.8985 -0.0488 39 1 5.8909 2.4028 -1.4923 40 1 7.8559 4.2140 -1.4512 41 1 6.0817 -0.7456 0.6221 42 1 5.6156 0.3131 1.9826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039174754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:42 Heat of formation + Delta-G solvation = -9.849035 kcal Electronic energy + Delta-G solvation = -21755.969617 eV Core-core repulsion = 18736.557513 eV Total energy + Delta-G solvation = -3019.412104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72038 -38.82923 -38.18765 -34.99037 -33.86241 -32.73397 -30.94101 -30.17947 -28.69902 -26.66769 -25.51116 -24.01202 -22.39020 -21.44123 -21.05983 -20.04771 -18.88867 -17.61690 -17.21446 -16.69516 -16.27085 -16.05442 -15.61980 -15.16943 -14.83446 -14.81898 -14.27999 -14.11006 -13.91035 -13.78734 -13.48835 -13.28227 -13.11694 -12.92895 -12.87898 -12.71700 -12.27007 -12.11586 -12.02996 -11.90783 -11.69748 -11.55565 -11.42020 -11.10271 -11.04424 -10.76014 -9.91763 -9.40991 -8.89141 -7.76398 -5.23378 1.43008 1.47259 1.55927 1.77470 2.14100 2.49205 3.30443 3.58707 3.74095 3.84441 3.94113 4.08050 4.13986 4.23004 4.28816 4.37820 4.44500 4.52523 4.62719 4.66665 4.69967 4.73167 4.78587 4.92219 4.95116 5.02808 5.08009 5.13710 5.18893 5.23857 5.29916 5.33942 5.43103 5.49749 5.55555 5.66851 5.81230 5.84157 6.28901 6.62993 7.09023 7.43299 7.77579 8.45185 9.25403 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031058 B = 0.005303 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.318123 B = 5279.235667 C = 5987.995256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.482 3.518 3 O -0.568 6.568 4 N -0.609 5.609 5 C 0.101 3.899 6 C -0.130 4.130 7 C -0.117 4.117 8 C -0.129 4.129 9 C 0.165 3.835 10 H 0.063 0.937 11 C -0.071 4.071 12 H 0.081 0.919 13 C -0.111 4.111 14 C 0.161 3.839 15 N -0.628 5.628 16 C -0.243 4.243 17 H 0.083 0.917 18 C -0.074 4.074 19 N -0.954 5.954 20 Si 0.988 3.012 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.268 1.268 24 C 0.134 3.866 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.085 0.915 38 H -0.031 1.031 39 H 0.067 0.933 40 H 0.246 0.754 41 H 0.033 0.967 42 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.268 -17.756 2.496 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.273 3.727 3 O -0.449 6.449 4 N -0.342 5.342 5 C -0.020 4.020 6 C -0.168 4.168 7 C -0.154 4.154 8 C -0.167 4.167 9 C 0.061 3.939 10 H 0.081 0.919 11 C -0.090 4.090 12 H 0.099 0.901 13 C -0.149 4.149 14 C 0.036 3.964 15 N -0.354 5.354 16 C -0.372 4.372 17 H 0.100 0.900 18 C -0.265 4.265 19 N -0.604 5.604 20 Si 0.815 3.185 21 H -0.208 1.208 22 H -0.220 1.220 23 H -0.193 1.193 24 C 0.009 3.991 25 H 0.128 0.872 26 H 0.100 0.900 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.103 0.897 38 H -0.013 1.013 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -16.826 -17.095 2.449 24.111 hybrid contribution 1.292 0.943 0.101 1.603 sum -15.534 -16.152 2.550 22.555 Atomic orbital electron populations 1.21953 0.88632 1.05551 1.05985 1.21706 0.92189 0.83036 0.75744 1.90783 1.70180 1.33823 1.50078 1.48270 1.06098 1.07290 1.72586 1.22083 0.98139 0.82296 0.99465 1.21921 0.95431 1.00912 0.98499 1.21530 0.96069 0.95017 1.02794 1.21998 1.01114 0.96303 0.97282 1.21058 0.80369 0.94098 0.98409 0.91934 1.22338 0.93524 0.95039 0.98103 0.90134 1.23107 0.98253 0.97672 0.95854 1.21618 0.88752 0.91333 0.94731 1.44906 1.06828 1.31093 1.52525 1.19545 0.85593 1.09704 1.22308 0.89961 1.25782 1.03071 0.97901 0.99782 1.70146 1.35837 1.20156 1.34216 0.84942 0.78771 0.76633 0.78148 1.20755 1.21959 1.19308 1.21656 0.92577 0.90402 0.94490 0.87217 0.90000 0.87139 0.90463 0.86696 0.87944 0.91745 0.91377 0.90520 0.91355 0.92375 0.94053 0.89676 1.01318 0.91492 0.94417 0.94963 0.97176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.67 71.24 0.62 -1.83 16 2 C 0.48 12.97 7.55 87.66 0.66 13.63 16 3 O -0.57 -21.92 10.07 -3.03 -0.03 -21.95 16 4 N -0.61 -14.29 2.97 -795.03 -2.36 -16.65 16 5 C 0.10 1.30 6.35 86.36 0.55 1.84 16 6 C -0.13 -1.48 6.08 30.67 0.19 -1.29 16 7 C -0.12 -1.87 5.88 30.62 0.18 -1.69 16 8 C -0.13 -3.18 4.70 30.68 0.14 -3.04 16 9 C 0.16 4.93 2.61 44.98 0.12 5.05 16 10 H 0.06 1.95 7.75 -2.39 -0.02 1.93 16 11 C -0.07 -2.93 1.92 -9.60 -0.02 -2.95 16 12 H 0.08 3.65 5.86 -4.35 -0.03 3.62 16 13 C -0.11 -5.23 5.80 31.99 0.19 -5.04 16 14 C 0.16 9.44 5.89 86.86 0.51 9.95 16 15 N -0.63 -36.83 3.39 -691.98 -2.35 -39.18 16 16 C -0.24 -14.90 10.27 84.03 0.86 -14.04 16 17 H 0.08 4.77 7.83 -2.91 -0.02 4.75 16 18 C -0.07 -4.51 5.49 84.86 0.47 -4.05 16 19 N -0.95 -62.08 10.09 21.65 0.22 -61.86 16 20 Si 0.99 48.57 29.55 68.60 2.03 50.60 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 24 C 0.13 6.34 5.85 86.73 0.51 6.85 16 25 H 0.11 1.07 7.90 -2.39 -0.02 1.05 16 26 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 27 H 0.11 1.05 7.74 -2.39 -0.02 1.04 16 28 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.11 0.78 5.93 -2.39 -0.01 0.77 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.85 6.45 -2.39 -0.02 1.84 16 35 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.04 1.89 7.78 -2.39 -0.02 1.87 16 37 H 0.09 4.04 5.56 -4.71 -0.03 4.01 16 38 H -0.03 -2.02 8.14 -2.39 -0.02 -2.04 16 39 H 0.07 4.34 5.87 -2.39 -0.01 4.33 16 40 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.03 1.44 6.47 -2.39 -0.02 1.42 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -80.24 311.17 3.44 -76.80 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.97 Total: 8.86 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 4.97 Total: 3.39 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -4.49 Total: -117.69 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.03 Total: -21.95 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -80.24 3.44 -76.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039174754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.948 kcal (2) G-P(sol) polarization free energy of solvation -80.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds