Wall clock time and date at job start Mon Mar 30 2020 00:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99941 * 2 1 4 4 N 1.34779 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.62822 * 3.31279 * 4 2 1 6 6 C 1.53196 * 108.77689 * 126.39199 * 5 4 2 7 7 C 1.53046 * 109.31189 * 54.62790 * 6 5 4 8 8 C 1.53041 * 109.54174 * 298.63768 * 7 6 5 9 9 C 1.46922 * 120.63149 * 183.31162 * 4 2 1 10 10 H 1.08997 * 109.70622 * 113.75243 * 9 4 2 11 11 C 1.53003 * 109.58837 * 353.39351 * 9 4 2 12 12 H 1.09005 * 110.77697 * 53.10197 * 11 9 4 13 13 C 1.55156 * 110.72345 * 176.34139 * 11 9 4 14 14 C 1.54901 * 101.58354 * 153.86724 * 13 11 9 15 15 N 1.47421 * 104.83324 * 322.99378 * 14 13 11 16 16 C 1.36940 * 125.64898 * 204.09127 * 15 14 13 17 17 H 1.08002 * 119.99836 * 171.75360 * 16 15 14 18 18 C 1.38807 * 119.99889 * 351.74880 * 16 15 14 19 19 N 1.31613 * 120.00088 * 330.63050 * 18 16 15 20 20 Si 1.86806 * 119.99835 * 150.62877 * 18 16 15 21 21 H 1.48507 * 109.47107 * 270.00027 * 20 18 16 22 22 H 1.48495 * 109.47220 * 150.00055 * 20 18 16 23 23 H 1.48497 * 109.47150 * 29.99705 * 20 18 16 24 24 C 1.47027 * 108.70311 * 24.35357 * 15 14 13 25 25 H 1.09004 * 109.46942 * 240.00007 * 1 2 3 26 26 H 1.08997 * 109.46950 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47335 * 119.99919 * 1 2 3 28 28 H 1.09000 * 109.59022 * 6.60245 * 5 4 2 29 29 H 1.09002 * 109.70026 * 246.24646 * 5 4 2 30 30 H 1.09004 * 109.49702 * 294.68498 * 6 5 4 31 31 H 1.08993 * 109.50215 * 174.58464 * 6 5 4 32 32 H 1.09001 * 109.45888 * 178.61370 * 7 6 5 33 33 H 1.09000 * 109.45532 * 58.66096 * 7 6 5 34 34 H 1.08999 * 109.49865 * 301.41371 * 8 7 6 35 35 H 1.08993 * 109.49808 * 181.31238 * 8 7 6 36 36 H 1.09005 * 110.99939 * 35.79225 * 13 11 9 37 37 H 1.09000 * 111.00517 * 271.94358 * 13 11 9 38 38 H 1.08996 * 110.37102 * 204.15201 * 14 13 11 39 39 H 1.09002 * 110.45888 * 81.87920 * 14 13 11 40 40 H 0.96996 * 120.00028 * 355.37231 * 19 18 16 41 41 H 1.09003 * 109.88305 * 118.13381 * 24 15 14 42 42 H 1.08996 * 109.88264 * 239.29391 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4621 -2.4465 -0.0742 6 6 2.0285 -3.2641 -1.2393 7 6 3.5434 -3.4029 -1.0709 8 6 4.1902 -2.0161 -1.0944 9 6 3.6482 -1.1845 0.0725 10 1 3.9640 -1.6295 1.0160 11 6 4.1835 0.2455 -0.0248 12 1 3.7068 0.8880 0.7156 13 6 5.7260 0.2668 0.1416 14 6 6.1047 1.5534 -0.6335 15 7 5.1831 1.5861 -1.7836 16 6 5.4085 2.2341 -2.9688 17 1 4.7338 2.0902 -3.7997 18 6 6.5042 3.0759 -3.1020 19 7 6.9780 3.7107 -2.0510 20 14 7.3062 3.3076 -4.7732 21 1 8.3765 2.2940 -4.9534 22 1 7.8944 4.6686 -4.8555 23 1 6.2853 3.1442 -5.8391 24 6 3.9791 0.8131 -1.4453 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 0.4010 -2.2605 -0.2402 29 1 1.5952 -2.9970 0.8572 30 1 1.8121 -2.7563 -2.1792 31 1 1.5711 -4.2534 -1.2460 32 1 3.9456 -4.0051 -1.8856 33 1 3.7599 -3.8886 -0.1194 34 1 3.9534 -1.5201 -2.0356 35 1 5.2711 -2.1172 -0.9978 36 1 6.1803 -0.6125 -0.3151 37 1 6.0045 0.3474 1.1923 38 1 7.1378 1.4994 -0.9766 39 1 5.9596 2.4328 -0.0060 40 1 6.5220 3.6436 -1.1976 41 1 3.1039 1.4626 -1.4647 42 1 3.8521 -0.0047 -2.1546 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039174757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:51 Heat of formation + Delta-G solvation = 15.741862 kcal Electronic energy + Delta-G solvation = -22063.011119 eV Core-core repulsion = 19044.708720 eV Total energy + Delta-G solvation = -3018.302399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67948 -37.45852 -36.92608 -33.42245 -32.79942 -31.04671 -29.44088 -28.89337 -27.05813 -24.92450 -24.15444 -22.99074 -21.06640 -20.16715 -19.76707 -18.29808 -17.40214 -16.41185 -15.77801 -15.45655 -15.12553 -14.55045 -14.07928 -13.97891 -13.63648 -13.51678 -13.20913 -13.00020 -12.84002 -12.41506 -12.33302 -12.07446 -11.76154 -11.57616 -11.11926 -11.04530 -10.88890 -10.62906 -10.42752 -10.21551 -10.02332 -9.91431 -9.87765 -9.75179 -9.36331 -8.68246 -8.28075 -8.16870 -6.64903 -5.92990 -2.84922 2.81874 3.10229 3.60405 3.63721 3.79967 4.56544 4.66089 4.76277 4.79537 4.92310 5.09437 5.16263 5.25678 5.27891 5.33348 5.40501 5.49216 5.49915 5.63914 5.73114 5.77390 5.79036 5.84038 5.91371 6.03564 6.08661 6.14133 6.30552 6.36311 6.46623 6.58571 6.77664 6.87119 7.12522 7.20978 7.30300 7.43762 7.59215 7.98798 8.48431 8.69133 9.26242 10.05329 10.64261 11.43262 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025010 B = 0.005913 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.272178 B = 4734.238088 C = 4992.356105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.492 3.508 3 O -0.505 6.505 4 N -0.611 5.611 5 C 0.110 3.890 6 C -0.136 4.136 7 C -0.118 4.118 8 C -0.142 4.142 9 C 0.161 3.839 10 H 0.067 0.933 11 C -0.096 4.096 12 H 0.107 0.893 13 C -0.142 4.142 14 C 0.149 3.851 15 N -0.607 5.607 16 C -0.327 4.327 17 H 0.065 0.935 18 C -0.032 4.032 19 N -0.926 5.926 20 Si 1.064 2.936 21 H -0.296 1.296 22 H -0.291 1.291 23 H -0.295 1.295 24 C 0.145 3.855 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.018 0.982 40 H 0.269 0.731 41 H 0.047 0.953 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 -16.611 6.102 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.281 3.719 3 O -0.381 6.381 4 N -0.347 5.347 5 C -0.013 4.013 6 C -0.174 4.174 7 C -0.156 4.156 8 C -0.179 4.179 9 C 0.058 3.942 10 H 0.085 0.915 11 C -0.115 4.115 12 H 0.124 0.876 13 C -0.181 4.181 14 C 0.024 3.976 15 N -0.334 5.334 16 C -0.455 4.455 17 H 0.083 0.917 18 C -0.232 4.232 19 N -0.569 5.569 20 Si 0.895 3.105 21 H -0.223 1.223 22 H -0.218 1.218 23 H -0.221 1.221 24 C 0.021 3.979 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.871 -15.244 5.192 19.430 hybrid contribution -1.354 -0.918 0.715 1.785 sum -12.225 -16.162 5.906 21.108 Atomic orbital electron populations 1.21968 0.92828 1.05068 1.03346 1.20721 0.90143 0.83607 0.77404 1.90807 1.68519 1.31835 1.46957 1.48103 1.06891 1.05635 1.74037 1.21679 0.96452 0.84644 0.98554 1.21925 0.96667 0.99869 0.98943 1.21522 0.94859 0.97515 1.01702 1.22204 1.00570 0.94740 1.00416 1.21208 0.78135 0.97336 0.97483 0.91541 1.22736 0.94264 0.93322 1.01158 0.87556 1.23044 0.95983 0.99909 0.99163 1.21446 0.94785 0.92774 0.88638 1.44663 1.15172 1.59769 1.13830 1.19802 1.12741 1.24818 0.88176 0.91744 1.25591 0.97887 0.94789 1.04962 1.70727 1.45506 1.38010 1.02640 0.83512 0.75998 0.76024 0.74981 1.22347 1.21796 1.22139 1.21803 0.90677 0.94089 0.91357 0.90012 0.89263 0.89956 0.89898 0.91690 0.91395 0.91060 0.91849 0.92196 0.89850 0.90595 0.92076 0.92473 0.93198 0.96385 0.91869 0.93573 0.96497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 8.69 36.01 0.31 -1.39 16 2 C 0.49 7.27 7.42 -10.98 -0.08 7.19 16 3 O -0.51 -10.02 10.12 5.55 0.06 -9.96 16 4 N -0.61 -7.96 2.96 -165.21 -0.49 -8.45 16 5 C 0.11 0.97 6.34 -3.71 -0.02 0.94 16 6 C -0.14 -1.20 6.08 -26.61 -0.16 -1.37 16 7 C -0.12 -1.23 5.88 -26.69 -0.16 -1.38 16 8 C -0.14 -2.00 4.80 -26.61 -0.13 -2.13 16 9 C 0.16 2.40 2.76 -67.60 -0.19 2.22 16 10 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 11 C -0.10 -1.88 2.06 -88.78 -0.18 -2.06 16 12 H 0.11 2.28 5.85 -52.60 -0.31 1.97 16 13 C -0.14 -2.85 6.44 -24.59 -0.16 -3.00 16 14 C 0.15 3.87 5.17 -2.54 -0.01 3.86 16 15 N -0.61 -17.09 3.36 -170.08 -0.57 -17.66 16 16 C -0.33 -10.08 10.05 -15.06 -0.15 -10.23 16 17 H 0.06 1.98 7.98 -52.49 -0.42 1.57 16 18 C -0.03 -0.98 5.07 -17.43 -0.09 -1.07 16 19 N -0.93 -30.00 12.73 55.49 0.71 -29.30 16 20 Si 1.06 27.12 30.01 -169.99 -5.10 22.02 16 21 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C 0.15 3.46 5.64 -3.06 -0.02 3.44 16 25 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 26 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 27 H 0.08 0.67 7.55 -51.93 -0.39 0.28 16 28 H 0.08 0.56 5.95 -51.93 -0.31 0.25 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.42 5.51 -51.93 -0.29 1.13 16 35 H 0.08 1.11 6.58 -51.93 -0.34 0.77 16 36 H 0.06 1.15 6.27 -51.93 -0.33 0.83 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.40 7.48 -51.93 -0.39 1.01 16 39 H 0.02 0.51 6.97 -51.93 -0.36 0.15 16 40 H 0.27 8.81 5.78 -40.82 -0.24 8.58 16 41 H 0.05 1.22 5.72 -51.93 -0.30 0.93 16 42 H 0.02 0.41 5.11 -51.93 -0.27 0.14 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -35.97 306.81 -8.34 -44.31 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.52 Total: -0.60 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.04 Total: -4.99 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.35 Total: -55.41 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.06 Total: -9.96 kcal Atomic # 14 Polarization: 27.12 SS G_CDS: -5.10 Total: 22.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.97 -8.34 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039174757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.052 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds