Wall clock time and date at job start Mon Mar 30 2020 00:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99941 * 2 1 4 4 N 1.34779 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.62822 * 3.31279 * 4 2 1 6 6 C 1.53196 * 108.77689 * 126.39199 * 5 4 2 7 7 C 1.53046 * 109.31189 * 54.62790 * 6 5 4 8 8 C 1.53041 * 109.54174 * 298.63768 * 7 6 5 9 9 C 1.46922 * 120.63149 * 183.31162 * 4 2 1 10 10 H 1.08997 * 109.70622 * 113.75243 * 9 4 2 11 11 C 1.53003 * 109.58837 * 353.39351 * 9 4 2 12 12 H 1.09005 * 110.77697 * 53.10197 * 11 9 4 13 13 C 1.55156 * 110.72345 * 176.34139 * 11 9 4 14 14 C 1.54901 * 101.58354 * 153.86724 * 13 11 9 15 15 N 1.47421 * 104.83324 * 322.99378 * 14 13 11 16 16 C 1.36940 * 125.64898 * 204.09127 * 15 14 13 17 17 H 1.08002 * 119.99836 * 171.75360 * 16 15 14 18 18 C 1.38807 * 119.99889 * 351.74880 * 16 15 14 19 19 N 1.31613 * 120.00088 * 330.63050 * 18 16 15 20 20 Si 1.86806 * 119.99835 * 150.62877 * 18 16 15 21 21 H 1.48507 * 109.47107 * 270.00027 * 20 18 16 22 22 H 1.48495 * 109.47220 * 150.00055 * 20 18 16 23 23 H 1.48497 * 109.47150 * 29.99705 * 20 18 16 24 24 C 1.47027 * 108.70311 * 24.35357 * 15 14 13 25 25 H 1.09004 * 109.46942 * 240.00007 * 1 2 3 26 26 H 1.08997 * 109.46950 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47335 * 119.99919 * 1 2 3 28 28 H 1.09000 * 109.59022 * 6.60245 * 5 4 2 29 29 H 1.09002 * 109.70026 * 246.24646 * 5 4 2 30 30 H 1.09004 * 109.49702 * 294.68498 * 6 5 4 31 31 H 1.08993 * 109.50215 * 174.58464 * 6 5 4 32 32 H 1.09001 * 109.45888 * 178.61370 * 7 6 5 33 33 H 1.09000 * 109.45532 * 58.66096 * 7 6 5 34 34 H 1.08999 * 109.49865 * 301.41371 * 8 7 6 35 35 H 1.08993 * 109.49808 * 181.31238 * 8 7 6 36 36 H 1.09005 * 110.99939 * 35.79225 * 13 11 9 37 37 H 1.09000 * 111.00517 * 271.94358 * 13 11 9 38 38 H 1.08996 * 110.37102 * 204.15201 * 14 13 11 39 39 H 1.09002 * 110.45888 * 81.87920 * 14 13 11 40 40 H 0.96996 * 120.00028 * 355.37231 * 19 18 16 41 41 H 1.09003 * 109.88305 * 118.13381 * 24 15 14 42 42 H 1.08996 * 109.88264 * 239.29391 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4621 -2.4465 -0.0742 6 6 2.0285 -3.2641 -1.2393 7 6 3.5434 -3.4029 -1.0709 8 6 4.1902 -2.0161 -1.0944 9 6 3.6482 -1.1845 0.0725 10 1 3.9640 -1.6295 1.0160 11 6 4.1835 0.2455 -0.0248 12 1 3.7068 0.8880 0.7156 13 6 5.7260 0.2668 0.1416 14 6 6.1047 1.5534 -0.6335 15 7 5.1831 1.5861 -1.7836 16 6 5.4085 2.2341 -2.9688 17 1 4.7338 2.0902 -3.7997 18 6 6.5042 3.0759 -3.1020 19 7 6.9780 3.7107 -2.0510 20 14 7.3062 3.3076 -4.7732 21 1 8.3765 2.2940 -4.9534 22 1 7.8944 4.6686 -4.8555 23 1 6.2853 3.1442 -5.8391 24 6 3.9791 0.8131 -1.4453 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 0.4010 -2.2605 -0.2402 29 1 1.5952 -2.9970 0.8572 30 1 1.8121 -2.7563 -2.1792 31 1 1.5711 -4.2534 -1.2460 32 1 3.9456 -4.0051 -1.8856 33 1 3.7599 -3.8886 -0.1194 34 1 3.9534 -1.5201 -2.0356 35 1 5.2711 -2.1172 -0.9978 36 1 6.1803 -0.6125 -0.3151 37 1 6.0045 0.3474 1.1923 38 1 7.1378 1.4994 -0.9766 39 1 5.9596 2.4328 -0.0060 40 1 6.5220 3.6436 -1.1976 41 1 3.1039 1.4626 -1.4647 42 1 3.8521 -0.0047 -2.1546 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039174757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:51 Heat of formation + Delta-G solvation = -8.815421 kcal Electronic energy + Delta-G solvation = -22064.076003 eV Core-core repulsion = 19044.708720 eV Total energy + Delta-G solvation = -3019.367283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89036 -39.04302 -38.21385 -35.24603 -33.88417 -32.68137 -30.92601 -30.24510 -28.67903 -26.65943 -25.49989 -24.35258 -22.18281 -21.99972 -21.20307 -19.77400 -19.35071 -17.61067 -16.92546 -16.83444 -16.51737 -16.06361 -15.68116 -15.27430 -15.11109 -14.79898 -14.76159 -14.39506 -14.08175 -13.76225 -13.55211 -13.18151 -13.06176 -12.98273 -12.73566 -12.38916 -12.37858 -12.14547 -11.92549 -11.79879 -11.68256 -11.58410 -11.53195 -11.34080 -11.32117 -10.50545 -9.96376 -9.45204 -8.92560 -8.40156 -5.28003 1.51348 1.61509 1.72857 1.79405 2.11477 2.62935 3.15362 3.47330 3.68252 3.79994 3.87043 3.96217 4.03414 4.10321 4.21402 4.24947 4.32358 4.45314 4.50373 4.60540 4.61890 4.69632 4.70960 4.80720 4.90388 4.94752 4.99792 5.02934 5.09698 5.15106 5.20859 5.25949 5.26319 5.36400 5.51395 5.58306 5.60040 5.77592 6.27571 6.57643 6.90306 7.37787 7.72933 8.33006 8.95949 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025010 B = 0.005913 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.272178 B = 4734.238088 C = 4992.356105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.480 3.520 3 O -0.571 6.571 4 N -0.609 5.609 5 C 0.104 3.896 6 C -0.133 4.133 7 C -0.113 4.113 8 C -0.138 4.138 9 C 0.165 3.835 10 H 0.094 0.906 11 C -0.080 4.080 12 H 0.087 0.913 13 C -0.126 4.126 14 C 0.152 3.848 15 N -0.631 5.631 16 C -0.347 4.347 17 H 0.056 0.944 18 C -0.085 4.085 19 N -0.950 5.950 20 Si 1.123 2.877 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.273 1.273 24 C 0.150 3.850 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.020 0.980 39 H -0.012 1.012 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 -20.091 6.409 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.271 3.729 3 O -0.452 6.452 4 N -0.343 5.343 5 C -0.017 4.017 6 C -0.171 4.171 7 C -0.150 4.150 8 C -0.176 4.176 9 C 0.062 3.938 10 H 0.112 0.888 11 C -0.099 4.099 12 H 0.105 0.895 13 C -0.165 4.165 14 C 0.026 3.974 15 N -0.358 5.358 16 C -0.476 4.476 17 H 0.074 0.926 18 C -0.280 4.280 19 N -0.594 5.594 20 Si 0.947 3.053 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.198 1.198 24 C 0.027 3.973 25 H 0.135 0.865 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.006 0.994 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -12.331 -18.800 5.512 23.149 hybrid contribution -0.990 0.158 0.636 1.187 sum -13.321 -18.642 6.148 23.723 Atomic orbital electron populations 1.21944 0.88778 1.05349 1.06048 1.21675 0.92230 0.83086 0.75904 1.90789 1.70139 1.34072 1.50175 1.48264 1.06154 1.07073 1.72807 1.22073 0.97402 0.82476 0.99783 1.21940 0.95658 1.01477 0.98062 1.21509 0.95682 0.94704 1.03145 1.22118 1.00549 0.96893 0.98000 1.21079 0.79772 0.93897 0.99061 0.88846 1.22511 0.93628 0.96201 0.97553 0.89484 1.22966 0.96567 0.97029 0.99931 1.21366 0.92957 0.94813 0.88274 1.45036 1.17265 1.59690 1.13797 1.20090 1.13133 1.25139 0.89199 0.92621 1.27252 0.98351 0.94291 1.08073 1.70861 1.46019 1.39840 1.02680 0.82762 0.75706 0.76173 0.70706 1.20699 1.21656 1.19830 1.21864 0.88026 0.93116 0.94342 0.86513 0.90400 0.87626 0.87215 0.89055 0.93255 0.87658 0.91347 0.90002 0.93522 0.91333 0.90441 0.89609 0.96164 0.99423 0.93671 0.96508 0.96150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.69 71.24 0.62 -2.18 16 2 C 0.48 13.80 7.42 87.66 0.65 14.45 16 3 O -0.57 -23.65 10.12 -3.04 -0.03 -23.68 16 4 N -0.61 -14.45 2.96 -795.00 -2.35 -16.81 16 5 C 0.10 1.33 6.34 86.36 0.55 1.88 16 6 C -0.13 -1.80 6.08 30.68 0.19 -1.62 16 7 C -0.11 -1.93 5.88 30.62 0.18 -1.75 16 8 C -0.14 -3.69 4.80 30.67 0.15 -3.54 16 9 C 0.17 4.65 2.76 44.98 0.12 4.78 16 10 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 11 C -0.08 -3.19 2.06 -9.60 -0.02 -3.21 16 12 H 0.09 3.88 5.85 -13.01 -0.08 3.81 16 13 C -0.13 -5.11 6.44 31.98 0.21 -4.90 16 14 C 0.15 8.31 5.17 86.85 0.45 8.76 16 15 N -0.63 -37.48 3.36 -692.00 -2.32 -39.80 16 16 C -0.35 -22.35 10.05 84.03 0.84 -21.51 16 17 H 0.06 3.58 7.98 -2.91 -0.02 3.56 16 18 C -0.09 -5.41 5.07 84.86 0.43 -4.98 16 19 N -0.95 -64.26 12.73 21.65 0.28 -63.98 16 20 Si 1.12 55.77 30.01 68.60 2.06 57.83 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.15 7.53 5.64 86.73 0.49 8.02 16 25 H 0.12 1.21 8.06 -2.39 -0.02 1.19 16 26 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 27 H 0.11 1.35 7.55 -2.39 -0.02 1.33 16 28 H 0.11 0.87 5.95 -2.39 -0.01 0.85 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.59 5.51 -2.39 -0.01 1.58 16 35 H 0.07 1.91 6.58 -2.39 -0.02 1.89 16 36 H 0.08 2.88 6.27 -2.38 -0.01 2.86 16 37 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.02 1.19 7.48 -2.39 -0.02 1.17 16 39 H -0.01 -0.71 6.97 -2.39 -0.02 -0.73 16 40 H 0.25 17.59 5.78 -92.71 -0.54 17.05 16 41 H 0.02 0.97 5.72 -2.42 -0.01 0.96 16 42 H 0.02 1.02 5.11 -2.39 -0.01 1.01 16 Total: -1.00 -85.92 306.81 3.65 -82.27 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.17 Total: 9.98 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.85 Total: -5.80 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -4.40 Total: -120.59 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.03 Total: -23.68 kcal Atomic # 14 Polarization: 55.77 SS G_CDS: 2.06 Total: 57.83 kcal Total: -85.92 3.65 -82.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039174757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.450 kcal (2) G-P(sol) polarization free energy of solvation -85.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds