Wall clock time and date at job start Mon Mar 30 2020 01:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34768 * 120.00448 * 2 1 4 4 O 1.21281 * 120.00186 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99722 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47171 * 299.99681 * 5 3 2 7 7 C 1.53000 * 109.46949 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47327 * 60.00444 * 7 6 5 9 9 C 1.53002 * 109.46743 * 299.99681 * 8 7 6 10 10 C 1.53002 * 109.47310 * 60.00006 * 9 8 7 11 11 C 1.46503 * 119.99304 * 180.02562 * 2 1 3 12 12 C 1.53940 * 113.74625 * 38.74254 * 11 2 1 13 13 N 1.47814 * 86.03770 * 222.08080 * 12 11 2 14 14 C 1.36935 * 134.45933 * 204.64373 * 13 12 11 15 15 H 1.08000 * 120.00062 * 173.35213 * 14 13 12 16 16 C 1.38812 * 119.99685 * 353.34737 * 14 13 12 17 17 N 1.31617 * 120.00444 * 5.06661 * 16 14 13 18 18 Si 1.86807 * 119.99669 * 185.06402 * 16 14 13 19 19 H 1.48498 * 109.47174 * 94.98923 * 18 16 14 20 20 H 1.48498 * 109.46844 * 214.98469 * 18 16 14 21 21 H 1.48498 * 109.47337 * 334.98910 * 18 16 14 22 22 C 1.47578 * 91.04903 * 24.54718 * 13 12 11 23 23 H 1.09009 * 109.47394 * 90.00002 * 1 2 3 24 24 H 1.09000 * 109.47374 * 330.00341 * 1 2 3 25 25 H 1.08999 * 109.47853 * 210.00059 * 1 2 3 26 26 H 1.09002 * 109.47502 * 60.00231 * 5 3 2 27 27 H 1.08997 * 109.47539 * 300.00178 * 6 5 3 28 28 H 1.08996 * 109.46762 * 60.00482 * 6 5 3 29 29 H 1.09003 * 109.47515 * 299.99603 * 7 6 5 30 30 H 1.08999 * 109.46761 * 180.02562 * 7 6 5 31 31 H 1.08997 * 109.47019 * 180.02562 * 8 7 6 32 32 H 1.08992 * 109.47421 * 59.99614 * 8 7 6 33 33 H 1.09002 * 109.47356 * 299.99640 * 9 8 7 34 34 H 1.09001 * 109.47087 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47079 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46604 * 59.99980 * 10 9 8 37 37 H 1.09003 * 112.94210 * 170.33366 * 11 2 1 38 38 H 1.08998 * 113.76755 * 336.34929 * 12 11 2 39 39 H 1.09005 * 113.76953 * 107.74800 * 12 11 2 40 40 H 0.96994 * 120.00117 * 180.02562 * 17 16 14 41 41 H 1.09003 * 113.77397 * 221.15037 * 22 13 12 42 42 H 1.09010 * 113.77091 * 89.75619 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 0.0005 5 6 1.3854 2.4722 0.0006 6 6 0.5054 2.5536 -1.2483 7 6 -0.2591 3.8789 -1.2480 8 6 0.7356 5.0415 -1.2485 9 6 1.6157 4.9601 0.0004 10 6 2.3802 3.6347 0.0002 11 6 2.1973 -1.2688 -0.0006 12 6 1.5554 -2.3547 -0.8829 13 7 1.8608 -3.2881 0.2218 14 6 2.0636 -4.6397 0.3071 15 1 2.3835 -5.0799 1.2400 16 6 1.8579 -5.4439 -0.8055 17 7 1.5652 -4.8982 -1.9669 18 14 1.9965 -7.3006 -0.6543 19 1 0.6487 -7.8807 -0.4261 20 1 2.5697 -7.8577 -1.9058 21 1 2.8812 -7.6395 0.4892 22 6 1.8619 -2.1787 1.1950 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 0.8900 0.5138 25 1 -0.3635 -0.8899 0.5138 26 1 0.7591 2.5298 0.8908 27 1 1.1317 2.4960 -2.1386 28 1 -0.2030 1.7252 -1.2482 29 1 -0.8855 3.9369 -0.3578 30 1 -0.8864 3.9367 -2.1375 31 1 0.1910 5.9856 -1.2478 32 1 1.3619 4.9835 -2.1386 33 1 0.9894 5.0181 0.8907 34 1 2.3240 5.7885 0.0004 35 1 3.0074 3.5770 0.8898 36 1 3.0065 3.5768 -0.8900 37 1 3.2668 -1.1421 -0.1691 38 1 0.4886 -2.2089 -1.0526 39 1 2.1090 -2.5604 -1.7991 40 1 1.4212 -5.4602 -2.7442 41 1 2.6597 -2.2440 1.9349 42 1 0.8853 -1.9811 1.6372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042419353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:21 Heat of formation + Delta-G solvation = 6.128638 kcal Electronic energy + Delta-G solvation = -20987.162363 eV Core-core repulsion = 17968.443103 eV Total energy + Delta-G solvation = -3018.719260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.30618 -38.25832 -37.04674 -34.52740 -32.11768 -30.96637 -30.78970 -27.64685 -26.70288 -24.81546 -24.21264 -22.72510 -22.37881 -20.23671 -19.41142 -18.47789 -16.98226 -16.62683 -16.07989 -15.45810 -14.96967 -14.79345 -14.28529 -14.09398 -13.83849 -13.80757 -13.04102 -12.77392 -12.55317 -12.33300 -12.28660 -11.84152 -11.74771 -11.53880 -11.35029 -11.31109 -11.18207 -10.88178 -10.74134 -10.70346 -10.50491 -10.28494 -10.10006 -10.04914 -9.56722 -9.25328 -8.80835 -8.09812 -6.90785 -5.81219 -3.13111 2.92538 3.32653 3.39185 3.44560 3.45972 4.44242 4.51052 4.57817 4.62269 5.01526 5.07244 5.10543 5.19683 5.25024 5.30898 5.37332 5.40849 5.44637 5.50290 5.54084 5.67848 5.78210 5.83108 5.91290 5.96145 5.96745 6.05196 6.06285 6.15622 6.20361 6.24251 6.35114 6.45066 6.59217 6.82027 7.18615 7.34205 7.51583 7.82098 7.93737 8.52360 9.00999 9.67087 10.55316 11.36600 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046790 B = 0.003928 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.272353 B = 7126.660686 C = 7358.739210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.599 5.599 3 C 0.513 3.487 4 O -0.547 6.547 5 C -0.104 4.104 6 C -0.125 4.125 7 C -0.116 4.116 8 C -0.122 4.122 9 C -0.119 4.119 10 C -0.099 4.099 11 C 0.089 3.911 12 C 0.160 3.840 13 N -0.606 5.606 14 C -0.224 4.224 15 H 0.082 0.918 16 C -0.005 4.005 17 N -0.919 5.919 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.108 3.892 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.254 0.746 41 H 0.046 0.954 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 18.906 2.490 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.301 3.699 4 O -0.425 6.425 5 C -0.125 4.125 6 C -0.162 4.162 7 C -0.154 4.154 8 C -0.159 4.159 9 C -0.156 4.156 10 C -0.137 4.137 11 C -0.015 4.015 12 C 0.034 3.966 13 N -0.333 5.333 14 C -0.352 4.352 15 H 0.100 0.900 16 C -0.202 4.202 17 N -0.565 5.565 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.019 4.019 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.721 18.542 2.364 19.279 hybrid contribution -0.220 -1.156 0.053 1.178 sum -4.941 17.386 2.417 18.235 Atomic orbital electron populations 1.21916 0.80229 1.02792 1.01723 1.48019 1.06753 1.06271 1.72081 1.20674 0.87987 0.85335 0.75926 1.90662 1.14102 1.87463 1.50273 1.21312 0.97908 0.92955 1.00318 1.21813 0.98818 0.98566 0.97005 1.21517 0.97640 0.94281 1.01933 1.21566 0.97824 0.98063 0.98466 1.21558 0.98625 0.97375 0.98084 1.21333 0.96816 0.92176 1.03335 1.24019 0.98038 0.80044 0.99359 1.22595 0.96892 0.83497 0.93613 1.45694 1.82142 1.02240 1.03231 1.19006 1.39073 0.79956 0.97142 0.90029 1.24831 1.01606 0.98164 0.95632 1.69833 1.53536 1.33885 0.99261 0.86096 0.77600 0.85007 0.77067 1.21581 1.21640 1.20481 1.22972 0.97972 0.87442 0.93549 0.92230 0.91453 0.90542 0.88938 0.91430 0.90105 0.91911 0.91774 0.92223 0.91933 0.92085 0.91910 0.91393 0.91259 0.86786 0.94897 0.91016 0.93552 0.93603 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 7.39 59.85 0.44 1.42 16 2 N -0.60 -9.81 3.09 -175.75 -0.54 -10.36 16 3 C 0.51 8.32 7.08 -10.99 -0.08 8.24 16 4 O -0.55 -10.98 15.46 5.56 0.09 -10.89 16 5 C -0.10 -1.21 1.72 -91.77 -0.16 -1.37 16 6 C -0.12 -1.26 4.84 -26.73 -0.13 -1.39 16 7 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 8 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 9 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 10 C -0.10 -1.12 4.49 -26.73 -0.12 -1.24 16 11 C 0.09 1.81 4.40 -70.15 -0.31 1.50 16 12 C 0.16 3.79 6.88 -2.84 -0.02 3.77 16 13 N -0.61 -15.77 3.70 -177.88 -0.66 -16.42 16 14 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 15 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.26 11.51 55.49 0.64 -26.62 16 18 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.11 2.28 8.46 -2.97 -0.03 2.26 16 23 H 0.06 0.72 6.95 -51.92 -0.36 0.36 16 24 H 0.07 0.66 6.01 -51.93 -0.31 0.35 16 25 H 0.08 1.06 6.35 -51.93 -0.33 0.73 16 26 H 0.09 0.94 7.40 -51.93 -0.38 0.55 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.79 4.53 -51.93 -0.24 0.55 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.11 2.54 7.22 -51.93 -0.37 2.17 16 38 H 0.03 0.77 6.83 -51.93 -0.35 0.41 16 39 H 0.07 1.90 7.37 -51.93 -0.38 1.52 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.04 0.69 6.84 -51.92 -0.36 0.33 16 LS Contribution 320.84 15.07 4.83 4.83 Total: -1.00 -32.30 320.84 -8.65 -40.95 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.86 Total: -1.66 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.13 Total: 3.04 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.56 Total: -53.40 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.30 -8.65 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042419353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.079 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds