Wall clock time and date at job start Mon Mar 30 2020 01:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34768 * 120.00448 * 2 1 4 4 O 1.21281 * 120.00186 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99722 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47171 * 299.99681 * 5 3 2 7 7 C 1.53000 * 109.46949 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47327 * 60.00444 * 7 6 5 9 9 C 1.53002 * 109.46743 * 299.99681 * 8 7 6 10 10 C 1.53002 * 109.47310 * 60.00006 * 9 8 7 11 11 C 1.46503 * 119.99304 * 180.02562 * 2 1 3 12 12 C 1.53940 * 113.74625 * 38.74254 * 11 2 1 13 13 N 1.47814 * 86.03770 * 222.08080 * 12 11 2 14 14 C 1.36935 * 134.45933 * 204.64373 * 13 12 11 15 15 H 1.08000 * 120.00062 * 173.35213 * 14 13 12 16 16 C 1.38812 * 119.99685 * 353.34737 * 14 13 12 17 17 N 1.31617 * 120.00444 * 5.06661 * 16 14 13 18 18 Si 1.86807 * 119.99669 * 185.06402 * 16 14 13 19 19 H 1.48498 * 109.47174 * 94.98923 * 18 16 14 20 20 H 1.48498 * 109.46844 * 214.98469 * 18 16 14 21 21 H 1.48498 * 109.47337 * 334.98910 * 18 16 14 22 22 C 1.47578 * 91.04903 * 24.54718 * 13 12 11 23 23 H 1.09009 * 109.47394 * 90.00002 * 1 2 3 24 24 H 1.09000 * 109.47374 * 330.00341 * 1 2 3 25 25 H 1.08999 * 109.47853 * 210.00059 * 1 2 3 26 26 H 1.09002 * 109.47502 * 60.00231 * 5 3 2 27 27 H 1.08997 * 109.47539 * 300.00178 * 6 5 3 28 28 H 1.08996 * 109.46762 * 60.00482 * 6 5 3 29 29 H 1.09003 * 109.47515 * 299.99603 * 7 6 5 30 30 H 1.08999 * 109.46761 * 180.02562 * 7 6 5 31 31 H 1.08997 * 109.47019 * 180.02562 * 8 7 6 32 32 H 1.08992 * 109.47421 * 59.99614 * 8 7 6 33 33 H 1.09002 * 109.47356 * 299.99640 * 9 8 7 34 34 H 1.09001 * 109.47087 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47079 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46604 * 59.99980 * 10 9 8 37 37 H 1.09003 * 112.94210 * 170.33366 * 11 2 1 38 38 H 1.08998 * 113.76755 * 336.34929 * 12 11 2 39 39 H 1.09005 * 113.76953 * 107.74800 * 12 11 2 40 40 H 0.96994 * 120.00117 * 180.02562 * 17 16 14 41 41 H 1.09003 * 113.77397 * 221.15037 * 22 13 12 42 42 H 1.09010 * 113.77091 * 89.75619 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 0.0005 5 6 1.3854 2.4722 0.0006 6 6 0.5054 2.5536 -1.2483 7 6 -0.2591 3.8789 -1.2480 8 6 0.7356 5.0415 -1.2485 9 6 1.6157 4.9601 0.0004 10 6 2.3802 3.6347 0.0002 11 6 2.1973 -1.2688 -0.0006 12 6 1.5554 -2.3547 -0.8829 13 7 1.8608 -3.2881 0.2218 14 6 2.0636 -4.6397 0.3071 15 1 2.3835 -5.0799 1.2400 16 6 1.8579 -5.4439 -0.8055 17 7 1.5652 -4.8982 -1.9669 18 14 1.9965 -7.3006 -0.6543 19 1 0.6487 -7.8807 -0.4261 20 1 2.5697 -7.8577 -1.9058 21 1 2.8812 -7.6395 0.4892 22 6 1.8619 -2.1787 1.1950 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 0.8900 0.5138 25 1 -0.3635 -0.8899 0.5138 26 1 0.7591 2.5298 0.8908 27 1 1.1317 2.4960 -2.1386 28 1 -0.2030 1.7252 -1.2482 29 1 -0.8855 3.9369 -0.3578 30 1 -0.8864 3.9367 -2.1375 31 1 0.1910 5.9856 -1.2478 32 1 1.3619 4.9835 -2.1386 33 1 0.9894 5.0181 0.8907 34 1 2.3240 5.7885 0.0004 35 1 3.0074 3.5770 0.8898 36 1 3.0065 3.5768 -0.8900 37 1 3.2668 -1.1421 -0.1691 38 1 0.4886 -2.2089 -1.0526 39 1 2.1090 -2.5604 -1.7991 40 1 1.4212 -5.4602 -2.7442 41 1 2.6597 -2.2440 1.9349 42 1 0.8853 -1.9811 1.6372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042419353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:20 Heat of formation + Delta-G solvation = -13.760077 kcal Electronic energy + Delta-G solvation = -20988.024803 eV Core-core repulsion = 17968.443103 eV Total energy + Delta-G solvation = -3019.581699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58641 -39.70616 -38.24532 -36.00131 -34.09053 -31.95492 -31.57650 -29.51377 -27.95340 -26.65378 -25.67735 -23.88814 -23.39275 -21.37622 -20.56935 -19.92549 -18.84811 -18.06884 -17.43347 -16.87465 -16.49851 -16.05746 -15.72546 -15.23013 -14.92332 -14.91771 -14.42776 -14.08421 -13.82977 -13.50607 -13.30072 -13.23938 -13.17851 -13.13415 -12.83551 -12.68378 -12.56742 -12.23083 -12.04617 -11.97009 -11.94486 -11.57522 -11.47297 -11.26951 -10.91933 -10.88809 -10.52843 -9.54212 -8.97330 -7.96268 -5.30032 1.45006 1.46871 1.56185 1.63418 2.00866 2.47563 3.21956 3.38270 3.52813 3.77480 3.79619 3.87186 4.14014 4.29790 4.30172 4.33568 4.35290 4.46753 4.50758 4.61514 4.63291 4.66983 4.70006 4.77242 4.84124 4.93643 5.03136 5.16370 5.21192 5.22037 5.23087 5.30777 5.31366 5.40088 5.43986 5.46339 5.61094 5.69484 5.86104 6.50344 6.86261 7.20803 7.54518 8.48951 9.21538 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046790 B = 0.003928 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.272353 B = 7126.660686 C = 7358.739210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.599 5.599 3 C 0.507 3.493 4 O -0.593 6.593 5 C -0.093 4.093 6 C -0.122 4.122 7 C -0.111 4.111 8 C -0.123 4.123 9 C -0.112 4.112 10 C -0.099 4.099 11 C 0.112 3.888 12 C 0.166 3.834 13 N -0.637 5.637 14 C -0.240 4.240 15 H 0.086 0.914 16 C -0.063 4.063 17 N -0.951 5.951 18 Si 0.982 3.018 19 H -0.283 1.283 20 H -0.294 1.294 21 H -0.268 1.268 22 C 0.116 3.884 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.121 0.879 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.032 0.968 40 H 0.251 0.749 41 H 0.049 0.951 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 20.309 3.709 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.330 5.330 3 C 0.297 3.703 4 O -0.474 6.474 5 C -0.114 4.114 6 C -0.160 4.160 7 C -0.148 4.148 8 C -0.160 4.160 9 C -0.150 4.150 10 C -0.137 4.137 11 C 0.007 3.993 12 C 0.040 3.960 13 N -0.364 5.364 14 C -0.368 4.368 15 H 0.103 0.897 16 C -0.256 4.256 17 N -0.599 5.599 18 Si 0.809 3.191 19 H -0.210 1.210 20 H -0.221 1.221 21 H -0.192 1.192 22 C -0.010 4.010 23 H 0.087 0.913 24 H 0.126 0.874 25 H 0.086 0.914 26 H 0.139 0.861 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.752 19.982 3.611 21.399 hybrid contribution 0.443 -1.528 -0.320 1.623 sum -6.309 18.454 3.291 19.778 Atomic orbital electron populations 1.22191 0.77549 1.04386 1.02895 1.48012 1.08261 1.04835 1.71906 1.21604 0.87725 0.86542 0.74417 1.90642 1.16436 1.88143 1.52201 1.21359 0.97879 0.89771 1.02356 1.21825 0.98484 1.00518 0.95165 1.21513 0.97478 0.92492 1.03359 1.21588 0.97750 0.99070 0.97597 1.21528 0.98756 0.95509 0.99170 1.21326 0.96815 0.93918 1.01608 1.23275 0.96745 0.81589 0.97734 1.22450 0.96811 0.84580 0.92198 1.46003 1.82519 1.02498 1.05393 1.19397 1.38622 0.81443 0.97333 0.89668 1.25688 1.01902 1.02713 0.95305 1.70015 1.54931 1.35196 0.99785 0.85018 0.77727 0.79349 0.76971 1.20999 1.22081 1.19225 1.23062 0.99200 0.85580 0.93201 0.91320 0.87399 0.91351 0.86081 0.93417 0.89329 0.90055 0.90768 0.90370 0.93025 0.90455 0.91335 0.92716 0.93586 0.89412 0.94179 0.94936 0.94052 0.93320 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.64 7.39 127.77 0.94 2.58 16 2 N -0.60 -19.11 3.09 -828.34 -2.56 -21.67 16 3 C 0.51 16.19 7.08 87.66 0.62 16.81 16 4 O -0.59 -24.49 15.46 -3.03 -0.05 -24.54 16 5 C -0.09 -1.97 1.72 -11.54 -0.02 -1.99 16 6 C -0.12 -2.18 4.84 30.59 0.15 -2.03 16 7 C -0.11 -1.37 5.92 30.59 0.18 -1.19 16 8 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 9 C -0.11 -1.62 5.92 30.60 0.18 -1.44 16 10 C -0.10 -2.13 4.49 30.60 0.14 -1.99 16 11 C 0.11 4.62 4.40 46.75 0.21 4.83 16 12 C 0.17 8.06 6.88 86.44 0.59 8.65 16 13 N -0.64 -33.56 3.70 -716.70 -2.65 -36.22 16 14 C -0.24 -13.72 10.70 84.03 0.90 -12.82 16 15 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 16 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 17 N -0.95 -57.84 11.51 21.65 0.25 -57.59 16 18 Si 0.98 45.97 29.56 68.60 2.03 47.99 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 C 0.12 4.84 8.46 86.49 0.73 5.57 16 23 H 0.07 1.49 6.95 -2.38 -0.02 1.47 16 24 H 0.11 1.62 6.01 -2.39 -0.01 1.61 16 25 H 0.07 1.72 6.35 -2.39 -0.02 1.71 16 26 H 0.12 1.94 7.40 -2.39 -0.02 1.92 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.44 4.53 -2.39 -0.01 1.43 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 37 H 0.09 4.11 7.22 -2.39 -0.02 4.09 16 38 H 0.04 1.88 6.83 -2.39 -0.02 1.87 16 39 H 0.03 1.81 7.37 -2.38 -0.02 1.79 16 40 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 2.28 6.84 -2.38 -0.02 2.26 16 Total: -1.00 -72.33 320.84 3.28 -69.05 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.99 Total: 10.53 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.27 Total: 12.44 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -4.96 Total: -115.48 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.05 Total: -24.54 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.33 3.28 -69.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042419353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.288 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds