Wall clock time and date at job start Mon Mar 30 2020 01:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 C 1.54267 * 110.03373 * 292.90976 * 6 5 3 8 8 C 1.54968 * 104.16137 * 217.13581 * 7 6 5 9 9 C 1.54884 * 102.77441 * 37.88396 * 8 7 6 10 10 C 1.53874 * 110.03593 * 175.68896 * 6 5 3 11 11 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 12 12 C 1.53941 * 113.74252 * 38.73819 * 11 2 1 13 13 N 1.47812 * 86.03977 * 222.08917 * 12 11 2 14 14 C 1.36939 * 134.45509 * 204.64724 * 13 12 11 15 15 H 1.08002 * 119.99449 * 179.86321 * 14 13 12 16 16 C 1.38805 * 120.00258 * 359.86342 * 14 13 12 17 17 N 1.31621 * 120.00001 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00294 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46786 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47349 * 119.99504 * 18 16 14 21 21 H 1.48495 * 109.47348 * 239.99846 * 18 16 14 22 22 C 1.47577 * 91.05063 * 24.54770 * 13 12 11 23 23 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 24 24 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 25 25 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 27 27 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 28 28 H 1.09004 * 110.01939 * 54.29365 * 6 5 3 29 29 H 1.09001 * 110.48609 * 335.77840 * 7 6 5 30 30 H 1.08999 * 110.49311 * 98.42344 * 7 6 5 31 31 H 1.08997 * 110.72048 * 279.57487 * 8 7 6 32 32 H 1.08993 * 110.92252 * 156.29196 * 8 7 6 33 33 H 1.09009 * 110.48779 * 203.40596 * 9 8 7 34 34 H 1.09001 * 110.59973 * 80.82109 * 9 8 7 35 35 H 1.09003 * 110.03243 * 238.56963 * 10 6 5 36 36 H 1.08996 * 110.02723 * 359.95243 * 10 6 5 37 37 H 1.09000 * 112.94667 * 170.33173 * 11 2 1 38 38 H 1.08999 * 113.77128 * 336.34949 * 12 11 2 39 39 H 1.08995 * 113.77380 * 107.74903 * 12 11 2 40 40 H 0.97005 * 120.00269 * 180.02562 * 17 16 14 41 41 H 1.09006 * 113.76885 * 221.15736 * 22 13 12 42 42 H 1.08998 * 113.77218 * 89.75789 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6352 0.0011 7 6 3.1517 3.6697 1.3361 8 6 3.3163 5.1804 1.6400 9 6 1.9663 5.7740 1.1667 10 6 1.6264 4.9727 -0.1070 11 6 2.1975 -1.2687 -0.0006 12 6 1.5555 -2.3546 -0.8828 13 7 1.8610 -3.2880 0.2219 14 6 2.0639 -4.6396 0.3071 15 1 2.2809 -5.0938 1.2626 16 6 1.9906 -5.4257 -0.8345 17 7 1.7256 -4.8722 -1.9989 18 14 2.2666 -7.2696 -0.7181 19 1 2.5452 -7.6403 0.6927 20 1 1.0513 -7.9827 -1.1871 21 1 3.4233 -7.6516 -1.5674 22 6 1.8620 -2.1786 1.1951 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 0.7583 2.5303 -0.8892 27 1 0.7589 2.5299 0.8908 28 1 3.0763 3.5308 -0.8306 29 1 2.5753 3.1831 2.1229 30 1 4.1261 3.1937 1.2258 31 1 4.1443 5.6006 1.0692 32 1 3.4596 5.3494 2.7072 33 1 2.0761 6.8331 0.9331 34 1 1.1968 5.6294 1.9251 35 1 1.9582 5.5178 -0.9907 36 1 0.5526 4.7932 -0.1606 37 1 3.2669 -1.1418 -0.1691 38 1 0.4887 -2.2090 -1.0525 39 1 2.1090 -2.5603 -1.7990 40 1 1.6741 -5.4217 -2.7966 41 1 2.6600 -2.2438 1.9349 42 1 0.8855 -1.9810 1.6372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042426921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:23 Heat of formation + Delta-G solvation = 5.575714 kcal Electronic energy + Delta-G solvation = -20611.426605 eV Core-core repulsion = 17592.683368 eV Total energy + Delta-G solvation = -3018.743236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00142 -38.35113 -37.16579 -34.39655 -32.11076 -31.32379 -28.72815 -27.81146 -26.65501 -25.81135 -24.80713 -22.93079 -20.80950 -20.15036 -19.30828 -18.39517 -17.00951 -16.69484 -16.18352 -15.49572 -15.24982 -14.90278 -14.72259 -13.93294 -13.68980 -13.42620 -13.24505 -12.76407 -12.44881 -12.28907 -11.89105 -11.81705 -11.51729 -11.31307 -11.28121 -11.14480 -11.02409 -10.89728 -10.80325 -10.70535 -10.65206 -10.44874 -10.22724 -10.03316 -9.56352 -9.31744 -8.81841 -8.08867 -6.91572 -5.79464 -3.12302 2.95771 3.33752 3.39644 3.44576 3.46415 4.43986 4.48447 4.53764 4.63663 4.89507 5.11443 5.19691 5.22182 5.32016 5.37668 5.46411 5.51101 5.52855 5.56155 5.58597 5.72040 5.73982 5.80445 5.81417 5.89084 5.96109 6.02634 6.11840 6.19960 6.22009 6.31246 6.44543 6.45697 6.58997 6.82647 7.19600 7.35856 7.51899 7.83393 7.94643 8.54496 9.01661 9.67780 10.55091 11.37792 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.053379 B = 0.003533 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.426946 B = 7922.411715 C = 8065.275042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.603 5.603 3 C 0.508 3.492 4 O -0.544 6.544 5 C -0.133 4.133 6 C -0.077 4.077 7 C -0.112 4.112 8 C -0.128 4.128 9 C -0.124 4.124 10 C -0.122 4.122 11 C 0.091 3.909 12 C 0.157 3.843 13 N -0.607 5.607 14 C -0.222 4.222 15 H 0.082 0.918 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.914 3.086 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.108 3.892 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.254 0.746 41 H 0.046 0.954 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 19.639 4.673 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.335 5.335 3 C 0.296 3.704 4 O -0.422 6.422 5 C -0.173 4.173 6 C -0.096 4.096 7 C -0.150 4.150 8 C -0.165 4.165 9 C -0.162 4.162 10 C -0.159 4.159 11 C -0.013 4.013 12 C 0.030 3.970 13 N -0.333 5.333 14 C -0.350 4.350 15 H 0.100 0.900 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.744 3.256 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.216 1.216 22 C -0.019 4.019 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.890 19.278 4.548 20.017 hybrid contribution -0.242 -1.164 -0.030 1.190 sum -3.133 18.114 4.519 18.930 Atomic orbital electron populations 1.21761 0.80102 1.02819 1.01852 1.48067 1.06803 1.06372 1.72293 1.20683 0.88185 0.85378 0.76131 1.90658 1.14010 1.87432 1.50079 1.21884 0.99072 0.92569 1.03763 1.21538 0.96234 0.92419 0.99400 1.22390 1.01206 0.95322 0.96083 1.22541 0.97212 0.96232 1.00537 1.22350 0.97519 0.98937 0.97382 1.22236 1.00109 0.95553 0.98040 1.23979 0.98034 0.80040 0.99245 1.22657 0.96823 0.83592 0.93885 1.45718 1.81970 1.02201 1.03454 1.19045 1.41317 0.80254 0.94351 0.90018 1.24805 1.01976 0.98284 0.95357 1.69830 1.54694 1.34183 0.98023 0.86016 0.77411 0.84751 0.77394 1.20412 1.21714 1.21624 1.22968 0.97942 0.87413 0.93593 0.92563 0.90480 0.91692 0.89249 0.89217 0.90285 0.92141 0.90703 0.91713 0.91924 0.92078 0.91830 0.91847 0.91738 0.86751 0.95093 0.90597 0.93621 0.93584 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 8.83 59.84 0.53 1.52 16 2 N -0.60 -9.81 3.09 -175.75 -0.54 -10.35 16 3 C 0.51 8.01 7.45 -10.98 -0.08 7.93 16 4 O -0.54 -10.49 14.26 5.56 0.08 -10.41 16 5 C -0.13 -1.47 3.38 -27.88 -0.09 -1.57 16 6 C -0.08 -0.85 2.55 -89.50 -0.23 -1.07 16 7 C -0.11 -1.29 5.40 -25.03 -0.14 -1.42 16 8 C -0.13 -1.17 6.91 -24.70 -0.17 -1.35 16 9 C -0.12 -1.00 6.83 -25.08 -0.17 -1.18 16 10 C -0.12 -1.04 6.46 -25.61 -0.17 -1.21 16 11 C 0.09 1.84 4.40 -70.14 -0.31 1.53 16 12 C 0.16 3.71 6.97 -2.84 -0.02 3.69 16 13 N -0.61 -15.79 3.70 -177.88 -0.66 -16.45 16 14 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 15 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 17 N -0.92 -27.39 11.39 55.49 0.63 -26.75 16 18 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 C 0.11 2.28 8.46 -2.97 -0.03 2.26 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.07 6.35 -51.93 -0.33 0.74 16 25 H 0.06 0.61 6.44 -51.93 -0.33 0.28 16 26 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 27 H 0.09 0.85 7.28 -51.93 -0.38 0.47 16 28 H 0.08 1.00 7.95 -51.93 -0.41 0.59 16 29 H 0.06 0.70 7.77 -51.93 -0.40 0.30 16 30 H 0.07 1.02 7.63 -51.93 -0.40 0.62 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 37 H 0.11 2.55 7.22 -51.93 -0.37 2.17 16 38 H 0.03 0.72 6.83 -51.93 -0.35 0.37 16 39 H 0.08 2.03 7.17 -51.93 -0.37 1.66 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.03 0.68 6.84 -51.93 -0.36 0.32 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -32.18 327.54 -8.74 -40.92 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.04 Total: -1.48 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.13 Total: 2.37 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.57 Total: -53.56 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.18 -8.74 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042426921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.499 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds