Wall clock time and date at job start Mon Mar 30 2020 01:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 C 1.54267 * 110.03373 * 292.90976 * 6 5 3 8 8 C 1.54968 * 104.16137 * 217.13581 * 7 6 5 9 9 C 1.54884 * 102.77441 * 37.88396 * 8 7 6 10 10 C 1.53874 * 110.03593 * 175.68896 * 6 5 3 11 11 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 12 12 C 1.53941 * 113.74252 * 38.73819 * 11 2 1 13 13 N 1.47812 * 86.03977 * 222.08917 * 12 11 2 14 14 C 1.36939 * 134.45509 * 204.64724 * 13 12 11 15 15 H 1.08002 * 119.99449 * 179.86321 * 14 13 12 16 16 C 1.38805 * 120.00258 * 359.86342 * 14 13 12 17 17 N 1.31621 * 120.00001 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00294 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46786 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47349 * 119.99504 * 18 16 14 21 21 H 1.48495 * 109.47348 * 239.99846 * 18 16 14 22 22 C 1.47577 * 91.05063 * 24.54770 * 13 12 11 23 23 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 24 24 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 25 25 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 27 27 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 28 28 H 1.09004 * 110.01939 * 54.29365 * 6 5 3 29 29 H 1.09001 * 110.48609 * 335.77840 * 7 6 5 30 30 H 1.08999 * 110.49311 * 98.42344 * 7 6 5 31 31 H 1.08997 * 110.72048 * 279.57487 * 8 7 6 32 32 H 1.08993 * 110.92252 * 156.29196 * 8 7 6 33 33 H 1.09009 * 110.48779 * 203.40596 * 9 8 7 34 34 H 1.09001 * 110.59973 * 80.82109 * 9 8 7 35 35 H 1.09003 * 110.03243 * 238.56963 * 10 6 5 36 36 H 1.08996 * 110.02723 * 359.95243 * 10 6 5 37 37 H 1.09000 * 112.94667 * 170.33173 * 11 2 1 38 38 H 1.08999 * 113.77128 * 336.34949 * 12 11 2 39 39 H 1.08995 * 113.77380 * 107.74903 * 12 11 2 40 40 H 0.97005 * 120.00269 * 180.02562 * 17 16 14 41 41 H 1.09006 * 113.76885 * 221.15736 * 22 13 12 42 42 H 1.08998 * 113.77218 * 89.75789 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6352 0.0011 7 6 3.1517 3.6697 1.3361 8 6 3.3163 5.1804 1.6400 9 6 1.9663 5.7740 1.1667 10 6 1.6264 4.9727 -0.1070 11 6 2.1975 -1.2687 -0.0006 12 6 1.5555 -2.3546 -0.8828 13 7 1.8610 -3.2880 0.2219 14 6 2.0639 -4.6396 0.3071 15 1 2.2809 -5.0938 1.2626 16 6 1.9906 -5.4257 -0.8345 17 7 1.7256 -4.8722 -1.9989 18 14 2.2666 -7.2696 -0.7181 19 1 2.5452 -7.6403 0.6927 20 1 1.0513 -7.9827 -1.1871 21 1 3.4233 -7.6516 -1.5674 22 6 1.8620 -2.1786 1.1951 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 0.7583 2.5303 -0.8892 27 1 0.7589 2.5299 0.8908 28 1 3.0763 3.5308 -0.8306 29 1 2.5753 3.1831 2.1229 30 1 4.1261 3.1937 1.2258 31 1 4.1443 5.6006 1.0692 32 1 3.4596 5.3494 2.7072 33 1 2.0761 6.8331 0.9331 34 1 1.1968 5.6294 1.9251 35 1 1.9582 5.5178 -0.9907 36 1 0.5526 4.7932 -0.1606 37 1 3.2669 -1.1418 -0.1691 38 1 0.4887 -2.2090 -1.0525 39 1 2.1090 -2.5603 -1.7990 40 1 1.6741 -5.4217 -2.7966 41 1 2.6600 -2.2438 1.9349 42 1 0.8855 -1.9810 1.6372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042426921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:23 Heat of formation + Delta-G solvation = -13.921555 kcal Electronic energy + Delta-G solvation = -20612.272070 eV Core-core repulsion = 17592.683368 eV Total energy + Delta-G solvation = -3019.588702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31822 -39.66941 -38.38923 -35.87027 -34.06437 -32.32983 -29.66853 -29.45915 -27.82799 -26.96033 -26.64015 -24.67933 -21.72161 -21.36099 -20.38457 -19.78786 -18.85722 -18.07300 -17.47162 -16.91680 -16.64271 -16.16737 -15.78236 -15.70775 -14.94601 -14.61811 -14.19478 -14.10441 -13.74304 -13.65413 -13.34559 -13.20176 -13.12314 -12.83724 -12.79856 -12.58797 -12.11664 -11.99749 -11.95148 -11.87332 -11.77551 -11.59083 -11.55473 -11.46508 -11.20998 -10.90963 -10.62986 -9.50510 -8.98320 -7.94938 -5.29498 1.44406 1.46156 1.56433 1.71774 2.05298 2.47528 3.24359 3.38613 3.59175 3.77196 3.83092 3.84612 3.97814 4.26976 4.34258 4.39591 4.43383 4.49678 4.63105 4.66001 4.70375 4.74836 4.78800 4.84778 4.89998 4.95640 4.99916 5.03310 5.16605 5.17306 5.19533 5.25018 5.31970 5.43970 5.44661 5.55628 5.60761 5.72075 5.87052 6.55875 6.86696 7.28319 7.54892 8.48677 9.22274 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.053379 B = 0.003533 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.426946 B = 7922.411715 C = 8065.275042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.604 5.604 3 C 0.502 3.498 4 O -0.587 6.587 5 C -0.122 4.122 6 C -0.079 4.079 7 C -0.115 4.115 8 C -0.126 4.126 9 C -0.120 4.120 10 C -0.116 4.116 11 C 0.115 3.885 12 C 0.161 3.839 13 N -0.638 5.638 14 C -0.236 4.236 15 H 0.086 0.914 16 C -0.066 4.066 17 N -0.953 5.953 18 Si 0.983 3.017 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.293 1.293 22 C 0.115 3.885 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.250 0.750 41 H 0.048 0.952 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 21.255 5.813 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.337 5.337 3 C 0.292 3.708 4 O -0.468 6.468 5 C -0.161 4.161 6 C -0.098 4.098 7 C -0.153 4.153 8 C -0.164 4.164 9 C -0.157 4.157 10 C -0.153 4.153 11 C 0.009 3.991 12 C 0.035 3.965 13 N -0.365 5.365 14 C -0.365 4.365 15 H 0.104 0.896 16 C -0.259 4.259 17 N -0.601 5.601 18 Si 0.811 3.189 19 H -0.189 1.189 20 H -0.215 1.215 21 H -0.220 1.220 22 C -0.011 4.011 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.856 20.935 5.717 22.238 hybrid contribution 0.400 -1.608 -0.363 1.696 sum -4.457 19.327 5.354 20.544 Atomic orbital electron populations 1.22021 0.77411 1.04466 1.02974 1.48079 1.08317 1.04939 1.72325 1.21624 0.87963 0.86524 0.74644 1.90651 1.16285 1.88053 1.51788 1.21948 0.98871 0.89030 1.06259 1.21538 0.96149 0.94115 0.97987 1.22361 0.99576 0.96759 0.96608 1.22537 0.98259 0.94532 1.01071 1.22352 0.96641 0.99460 0.97297 1.22205 1.00845 0.93765 0.98498 1.23197 0.96709 0.81690 0.97481 1.22516 0.96778 0.84735 0.92475 1.46039 1.82355 1.02452 1.05627 1.19435 1.40661 0.81749 0.94614 0.89643 1.25679 1.02376 1.02806 0.95060 1.70017 1.56089 1.35526 0.98504 0.84948 0.76872 0.79243 0.77859 1.18876 1.21535 1.21969 1.23064 0.99133 0.85615 0.93262 0.91748 0.91540 0.87301 0.86682 0.86276 0.92852 0.92160 0.94080 0.92066 0.91201 0.90810 0.90756 0.91490 0.89718 0.89452 0.94322 0.94564 0.94124 0.93407 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.63 8.83 127.77 1.13 2.76 16 2 N -0.60 -18.92 3.09 -828.33 -2.56 -21.48 16 3 C 0.50 15.31 7.45 87.66 0.65 15.97 16 4 O -0.59 -23.23 14.26 -3.03 -0.04 -23.27 16 5 C -0.12 -2.32 3.38 29.85 0.10 -2.22 16 6 C -0.08 -1.60 2.55 -10.07 -0.03 -1.63 16 7 C -0.12 -2.58 5.40 31.70 0.17 -2.40 16 8 C -0.13 -2.13 6.91 31.91 0.22 -1.91 16 9 C -0.12 -1.54 6.83 31.67 0.22 -1.33 16 10 C -0.12 -1.59 6.46 31.32 0.20 -1.39 16 11 C 0.11 4.72 4.40 46.75 0.21 4.92 16 12 C 0.16 7.84 6.97 86.44 0.60 8.45 16 13 N -0.64 -33.66 3.70 -716.68 -2.65 -36.32 16 14 C -0.24 -13.55 10.70 84.03 0.90 -12.65 16 15 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 16 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 17 N -0.95 -58.19 11.39 21.65 0.25 -57.95 16 18 Si 0.98 46.24 29.55 68.60 2.03 48.26 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 C 0.12 4.83 8.46 86.49 0.73 5.56 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.66 6.35 -2.38 -0.02 1.65 16 25 H 0.11 1.50 6.44 -2.39 -0.02 1.48 16 26 H 0.12 1.68 8.11 -2.39 -0.02 1.66 16 27 H 0.12 1.64 7.28 -2.39 -0.02 1.63 16 28 H 0.05 1.35 7.95 -2.38 -0.02 1.33 16 29 H 0.06 1.32 7.77 -2.39 -0.02 1.30 16 30 H 0.04 1.17 7.63 -2.39 -0.02 1.15 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.86 7.67 -2.39 -0.02 0.84 16 37 H 0.09 4.08 7.22 -2.39 -0.02 4.06 16 38 H 0.04 1.81 6.83 -2.39 -0.02 1.80 16 39 H 0.04 2.03 7.17 -2.39 -0.02 2.01 16 40 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 41 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.06 2.26 6.84 -2.39 -0.02 2.25 16 Total: -1.00 -72.67 327.54 3.57 -69.10 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.98 Total: 10.88 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 5.57 Total: 10.78 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.97 Total: -115.75 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.04 Total: -23.27 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -72.67 3.57 -69.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042426921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.174 kcal (2) G-P(sol) polarization free energy of solvation -72.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds