Wall clock time and date at job start Mon Mar 30 2020 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 119.99822 * 2 1 4 4 N 1.34772 * 119.99889 * 179.97438 * 2 1 3 5 5 C 1.44575 * 118.71323 * 355.92358 * 4 2 1 6 6 C 1.54749 * 109.60110 * 270.62066 * 5 4 2 7 7 C 1.47058 * 110.53070 * 288.35821 * 6 5 4 8 8 C 1.52803 * 114.32251 * 62.90374 * 7 6 5 9 9 C 1.50725 * 109.28408 * 275.71001 * 8 7 6 10 10 C 1.54236 * 110.91883 * 330.10092 * 9 8 7 11 11 C 1.55011 * 102.77082 * 218.14728 * 10 9 8 12 12 N 1.48128 * 103.31416 * 37.06470 * 11 10 9 13 13 C 1.36944 * 127.03336 * 140.93770 * 12 11 10 14 14 H 1.07997 * 119.99413 * 4.33360 * 13 12 11 15 15 C 1.38816 * 120.00008 * 184.33431 * 13 12 11 16 16 N 1.31617 * 119.99984 * 4.92840 * 15 13 12 17 17 Si 1.86798 * 119.99756 * 184.92786 * 15 13 12 18 18 H 1.48500 * 109.46747 * 90.00261 * 17 15 13 19 19 H 1.48495 * 109.46912 * 209.99946 * 17 15 13 20 20 H 1.48499 * 109.47378 * 330.00222 * 17 15 13 21 21 C 1.47566 * 105.94037 * 320.91738 * 12 11 10 22 22 C 1.47628 * 118.71040 * 175.89809 * 4 2 1 23 23 H 1.08993 * 109.46918 * 175.20528 * 1 2 3 24 24 H 1.09001 * 109.46666 * 295.20620 * 1 2 3 25 25 H 1.08993 * 109.47112 * 55.20457 * 1 2 3 26 26 H 1.09002 * 109.44923 * 150.57742 * 5 4 2 27 27 H 1.09001 * 109.42234 * 30.65064 * 5 4 2 28 28 H 1.09005 * 109.26188 * 168.08456 * 6 5 4 29 29 H 1.08997 * 109.23925 * 48.61237 * 6 5 4 30 30 H 1.09004 * 108.51607 * 301.64879 * 7 6 5 31 31 H 1.09001 * 108.51607 * 184.15593 * 7 6 5 32 32 H 1.09004 * 109.49980 * 35.64627 * 8 7 6 33 33 H 1.08994 * 109.50916 * 155.76806 * 8 7 6 34 34 H 1.08997 * 110.74981 * 336.47106 * 10 9 8 35 35 H 1.08996 * 110.74853 * 99.83000 * 10 9 8 36 36 H 1.08998 * 110.65476 * 278.60485 * 11 10 9 37 37 H 1.09004 * 110.79189 * 155.58497 * 11 10 9 38 38 H 0.96998 * 119.99793 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.96508 * 266.03142 * 21 12 11 40 40 H 1.08991 * 109.96907 * 144.77969 * 21 12 11 41 41 H 1.08994 * 108.97226 * 258.67289 * 22 4 2 42 42 H 1.09002 * 108.96682 * 17.44745 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4328 -2.4010 0.0912 6 6 1.2405 -2.7834 1.5783 7 6 2.5118 -3.2351 2.1633 8 6 3.6061 -2.1690 2.1906 9 6 4.3138 -2.1478 0.8600 10 6 4.2988 -3.5446 0.2060 11 6 5.7027 -3.6331 -0.4453 12 7 6.5766 -2.9451 0.5331 13 6 7.8461 -3.3040 0.9003 14 1 8.3360 -4.1324 0.4103 15 6 8.5031 -2.6031 1.9023 16 7 7.8726 -1.6573 2.5659 17 14 10.2821 -3.0021 2.3087 18 1 11.1804 -2.1630 1.4756 19 1 10.5361 -2.7238 3.7451 20 1 10.5441 -4.4367 2.0286 21 6 5.7996 -1.7934 1.0308 22 6 3.6539 -1.1357 -0.0921 23 1 -0.3633 -1.0240 -0.0859 24 1 -0.3633 0.4377 0.9298 25 1 -0.3633 0.5864 -0.8439 26 1 1.9780 -3.1944 -0.4200 27 1 0.4582 -2.2694 -0.3788 28 1 0.5058 -3.5854 1.6513 29 1 0.8799 -1.9145 2.1289 30 1 2.8736 -4.0878 1.5887 31 1 2.3247 -3.5653 3.1851 32 1 3.1587 -1.1932 2.3803 33 1 4.3213 -2.4016 2.9794 34 1 4.1727 -4.3223 0.9592 35 1 3.5172 -3.6082 -0.5510 36 1 5.7153 -3.1140 -1.4036 37 1 6.0073 -4.6724 -0.5684 38 1 8.3317 -1.1678 3.2663 39 1 6.0392 -0.9034 0.4489 40 1 6.0225 -1.6211 2.0837 41 1 3.9496 -1.3670 -1.1153 42 1 4.0034 -0.1344 0.1597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045903813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:27 Heat of formation + Delta-G solvation = 7.199273 kcal Electronic energy + Delta-G solvation = -22027.961674 eV Core-core repulsion = 19009.288840 eV Total energy + Delta-G solvation = -3018.672834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54285 -38.39653 -36.06642 -33.64247 -32.81352 -31.20800 -29.61481 -28.33385 -26.97882 -25.35766 -24.88874 -22.93723 -21.50831 -20.01592 -18.76288 -17.96521 -16.99664 -16.80339 -16.15214 -15.54138 -14.72739 -14.61751 -14.32778 -13.93942 -13.66467 -13.44483 -13.10041 -12.92152 -12.62638 -12.29149 -12.05235 -11.85930 -11.74493 -11.45791 -11.06337 -11.03113 -10.87430 -10.66033 -10.33799 -10.24437 -9.99575 -9.89433 -9.73301 -9.70121 -9.49433 -9.33034 -8.70667 -8.38000 -6.83187 -5.60071 -3.06315 2.77568 3.24154 3.41479 3.46222 3.48267 4.50655 4.65026 4.83248 4.94207 5.00417 5.13543 5.25940 5.36566 5.37861 5.47048 5.53115 5.61567 5.68133 5.75594 5.85038 5.88296 5.92942 6.02938 6.15641 6.21212 6.29299 6.33296 6.35767 6.57095 6.60624 6.65309 6.76206 6.90750 6.99426 7.02871 7.46734 7.60441 7.63584 7.87948 8.35845 8.42485 9.22281 9.83846 10.53406 11.40231 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.005523 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.306732 B = 5068.619280 C = 5301.345576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.503 3.497 3 O -0.551 6.551 4 N -0.599 5.599 5 C 0.097 3.903 6 C -0.130 4.130 7 C -0.137 4.137 8 C -0.092 4.092 9 C -0.086 4.086 10 C -0.132 4.132 11 C 0.124 3.876 12 N -0.599 5.599 13 C -0.218 4.218 14 H 0.078 0.922 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.914 3.086 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.146 3.854 22 C 0.125 3.875 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.045 0.955 38 H 0.252 0.748 39 H 0.006 0.994 40 H 0.124 0.876 41 H 0.059 0.941 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 -3.186 -3.723 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.291 3.709 3 O -0.429 6.429 4 N -0.332 5.332 5 C -0.026 4.026 6 C -0.169 4.169 7 C -0.174 4.174 8 C -0.130 4.130 9 C -0.088 4.088 10 C -0.170 4.170 11 C -0.002 4.002 12 N -0.323 5.323 13 C -0.347 4.347 14 H 0.096 0.904 15 C -0.208 4.208 16 N -0.569 5.569 17 Si 0.745 3.255 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.020 3.980 22 C 0.004 3.996 23 H 0.101 0.899 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.024 0.976 40 H 0.141 0.859 41 H 0.077 0.923 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.922 -2.603 -3.572 16.524 hybrid contribution 0.843 -0.192 0.179 0.883 sum -15.079 -2.795 -3.394 15.707 Atomic orbital electron populations 1.22042 0.92643 1.04419 1.04820 1.20826 0.90458 0.83680 0.75930 1.90708 1.70629 1.31344 1.50248 1.47828 1.07537 1.05799 1.71997 1.21872 0.96395 0.87384 0.96989 1.21226 0.98404 1.01172 0.96054 1.20788 0.95190 1.00568 1.00856 1.21041 0.96685 0.98038 0.97228 1.21567 0.98842 0.94333 0.94049 1.23194 0.97769 0.96997 0.99031 1.21865 0.89810 0.96057 0.92484 1.44806 1.13306 1.28793 1.45410 1.19081 0.88467 1.12654 1.14466 0.90429 1.24772 0.98694 0.98823 0.98499 1.69596 1.35089 1.26319 1.25863 0.86071 0.84444 0.77647 0.77347 1.21690 1.21731 1.20741 1.22037 0.83480 0.88359 1.04125 1.22104 0.76906 1.01567 0.99032 0.89902 0.89082 0.89287 0.89510 0.90364 0.91411 0.92283 0.90332 0.93057 0.92799 0.90933 0.90769 0.92447 0.96266 0.93634 0.93667 0.97567 0.85916 0.92290 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 10.01 36.01 0.36 -1.35 16 2 C 0.50 7.44 7.73 -10.99 -0.08 7.36 16 3 O -0.55 -10.76 16.38 5.55 0.09 -10.67 16 4 N -0.60 -8.47 2.28 -172.67 -0.39 -8.86 16 5 C 0.10 1.03 5.09 -4.15 -0.02 1.00 16 6 C -0.13 -1.37 5.72 -28.66 -0.16 -1.53 16 7 C -0.14 -1.83 4.95 -29.68 -0.15 -1.97 16 8 C -0.09 -1.59 4.88 -27.97 -0.14 -1.72 16 9 C -0.09 -1.58 0.62 -154.20 -0.10 -1.68 16 10 C -0.13 -2.22 4.24 -25.02 -0.11 -2.32 16 11 C 0.12 2.53 7.28 -2.08 -0.02 2.52 16 12 N -0.60 -15.21 3.37 -169.38 -0.57 -15.78 16 13 C -0.22 -6.07 10.36 -15.05 -0.16 -6.22 16 14 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 15 C -0.01 -0.35 5.47 -17.43 -0.10 -0.45 16 16 N -0.92 -26.92 10.17 55.49 0.56 -26.36 16 17 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.15 3.52 5.49 -3.09 -0.02 3.50 16 22 C 0.13 2.18 4.68 -2.99 -0.01 2.16 16 23 H 0.08 0.59 5.19 -51.93 -0.27 0.32 16 24 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 0.92 5.16 -51.93 -0.27 0.65 16 27 H 0.08 0.61 5.53 -51.93 -0.29 0.32 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.05 4.55 -51.93 -0.24 0.82 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.95 7.55 -51.93 -0.39 0.56 16 33 H 0.07 1.43 7.42 -51.93 -0.39 1.05 16 34 H 0.07 1.25 5.85 -51.93 -0.30 0.95 16 35 H 0.06 0.81 5.22 -51.93 -0.27 0.54 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.01 0.17 7.47 -51.93 -0.39 -0.22 16 40 H 0.12 3.36 4.68 -51.93 -0.24 3.12 16 41 H 0.06 1.02 7.95 -51.93 -0.41 0.61 16 42 H 0.09 1.79 6.61 -51.93 -0.34 1.44 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -32.06 305.93 -7.72 -39.78 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.31 Total: 0.84 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.40 Total: -51.00 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.06 -7.72 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045903813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.983 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds