Wall clock time and date at job start Mon Mar 30 2020 00:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 119.99822 * 2 1 4 4 N 1.34772 * 119.99889 * 179.97438 * 2 1 3 5 5 C 1.44575 * 118.71323 * 355.92358 * 4 2 1 6 6 C 1.54749 * 109.60110 * 270.62066 * 5 4 2 7 7 C 1.47058 * 110.53070 * 288.35821 * 6 5 4 8 8 C 1.52803 * 114.32251 * 62.90374 * 7 6 5 9 9 C 1.50725 * 109.28408 * 275.71001 * 8 7 6 10 10 C 1.54236 * 110.91883 * 330.10092 * 9 8 7 11 11 C 1.55011 * 102.77082 * 218.14728 * 10 9 8 12 12 N 1.48128 * 103.31416 * 37.06470 * 11 10 9 13 13 C 1.36944 * 127.03336 * 140.93770 * 12 11 10 14 14 H 1.07997 * 119.99413 * 4.33360 * 13 12 11 15 15 C 1.38816 * 120.00008 * 184.33431 * 13 12 11 16 16 N 1.31617 * 119.99984 * 4.92840 * 15 13 12 17 17 Si 1.86798 * 119.99756 * 184.92786 * 15 13 12 18 18 H 1.48500 * 109.46747 * 90.00261 * 17 15 13 19 19 H 1.48495 * 109.46912 * 209.99946 * 17 15 13 20 20 H 1.48499 * 109.47378 * 330.00222 * 17 15 13 21 21 C 1.47566 * 105.94037 * 320.91738 * 12 11 10 22 22 C 1.47628 * 118.71040 * 175.89809 * 4 2 1 23 23 H 1.08993 * 109.46918 * 175.20528 * 1 2 3 24 24 H 1.09001 * 109.46666 * 295.20620 * 1 2 3 25 25 H 1.08993 * 109.47112 * 55.20457 * 1 2 3 26 26 H 1.09002 * 109.44923 * 150.57742 * 5 4 2 27 27 H 1.09001 * 109.42234 * 30.65064 * 5 4 2 28 28 H 1.09005 * 109.26188 * 168.08456 * 6 5 4 29 29 H 1.08997 * 109.23925 * 48.61237 * 6 5 4 30 30 H 1.09004 * 108.51607 * 301.64879 * 7 6 5 31 31 H 1.09001 * 108.51607 * 184.15593 * 7 6 5 32 32 H 1.09004 * 109.49980 * 35.64627 * 8 7 6 33 33 H 1.08994 * 109.50916 * 155.76806 * 8 7 6 34 34 H 1.08997 * 110.74981 * 336.47106 * 10 9 8 35 35 H 1.08996 * 110.74853 * 99.83000 * 10 9 8 36 36 H 1.08998 * 110.65476 * 278.60485 * 11 10 9 37 37 H 1.09004 * 110.79189 * 155.58497 * 11 10 9 38 38 H 0.96998 * 119.99793 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.96508 * 266.03142 * 21 12 11 40 40 H 1.08991 * 109.96907 * 144.77969 * 21 12 11 41 41 H 1.08994 * 108.97226 * 258.67289 * 22 4 2 42 42 H 1.09002 * 108.96682 * 17.44745 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4328 -2.4010 0.0912 6 6 1.2405 -2.7834 1.5783 7 6 2.5118 -3.2351 2.1633 8 6 3.6061 -2.1690 2.1906 9 6 4.3138 -2.1478 0.8600 10 6 4.2988 -3.5446 0.2060 11 6 5.7027 -3.6331 -0.4453 12 7 6.5766 -2.9451 0.5331 13 6 7.8461 -3.3040 0.9003 14 1 8.3360 -4.1324 0.4103 15 6 8.5031 -2.6031 1.9023 16 7 7.8726 -1.6573 2.5659 17 14 10.2821 -3.0021 2.3087 18 1 11.1804 -2.1630 1.4756 19 1 10.5361 -2.7238 3.7451 20 1 10.5441 -4.4367 2.0286 21 6 5.7996 -1.7934 1.0308 22 6 3.6539 -1.1357 -0.0921 23 1 -0.3633 -1.0240 -0.0859 24 1 -0.3633 0.4377 0.9298 25 1 -0.3633 0.5864 -0.8439 26 1 1.9780 -3.1944 -0.4200 27 1 0.4582 -2.2694 -0.3788 28 1 0.5058 -3.5854 1.6513 29 1 0.8799 -1.9145 2.1289 30 1 2.8736 -4.0878 1.5887 31 1 2.3247 -3.5653 3.1851 32 1 3.1587 -1.1932 2.3803 33 1 4.3213 -2.4016 2.9794 34 1 4.1727 -4.3223 0.9592 35 1 3.5172 -3.6082 -0.5510 36 1 5.7153 -3.1140 -1.4036 37 1 6.0073 -4.6724 -0.5684 38 1 8.3317 -1.1678 3.2663 39 1 6.0392 -0.9034 0.4489 40 1 6.0225 -1.6211 2.0837 41 1 3.9496 -1.3670 -1.1153 42 1 4.0034 -0.1344 0.1597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045903813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:26 Heat of formation + Delta-G solvation = -13.467999 kcal Electronic energy + Delta-G solvation = -22028.857874 eV Core-core repulsion = 19009.288840 eV Total energy + Delta-G solvation = -3019.569034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80593 -39.80349 -37.48714 -35.07950 -34.35769 -32.87768 -30.61048 -30.07566 -28.39443 -26.92980 -26.28614 -24.46551 -22.89626 -21.62777 -19.83183 -19.44526 -18.85327 -18.07045 -17.35566 -16.82489 -16.55090 -16.05911 -15.78286 -15.23123 -15.04810 -14.78022 -14.50023 -14.29189 -13.88293 -13.60851 -13.21767 -13.16251 -13.05814 -12.88599 -12.86757 -12.73097 -12.34302 -12.08757 -12.03829 -11.82858 -11.61423 -11.44705 -11.35281 -11.13273 -10.89867 -10.78688 -10.63812 -9.57388 -8.90497 -7.73519 -5.23137 1.44746 1.47420 1.55721 1.65579 2.12109 2.49339 3.32981 3.53073 3.73717 3.81533 3.90485 3.95978 4.11714 4.16497 4.26516 4.34359 4.42397 4.55722 4.60922 4.63642 4.69881 4.80172 4.82777 4.93089 4.94055 5.00220 5.06211 5.20287 5.22453 5.27690 5.36802 5.39514 5.42863 5.45639 5.57906 5.69555 5.72438 5.85567 6.35378 6.53765 7.08257 7.24242 7.76721 8.46577 9.24557 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.005523 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.306732 B = 5068.619280 C = 5301.345576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.492 3.508 3 O -0.612 6.612 4 N -0.596 5.596 5 C 0.088 3.912 6 C -0.127 4.127 7 C -0.130 4.130 8 C -0.087 4.087 9 C -0.073 4.073 10 C -0.112 4.112 11 C 0.116 3.884 12 N -0.622 5.622 13 C -0.231 4.231 14 H 0.086 0.914 15 C -0.072 4.072 16 N -0.950 5.950 17 Si 0.980 3.020 18 H -0.291 1.291 19 H -0.295 1.295 20 H -0.264 1.264 21 C 0.149 3.851 22 C 0.136 3.864 23 H 0.117 0.883 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.024 0.976 37 H 0.057 0.943 38 H 0.245 0.755 39 H -0.033 1.033 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.541 -5.729 -4.769 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.283 3.717 3 O -0.495 6.495 4 N -0.327 5.327 5 C -0.033 4.033 6 C -0.165 4.165 7 C -0.167 4.167 8 C -0.125 4.125 9 C -0.075 4.075 10 C -0.150 4.150 11 C -0.009 4.009 12 N -0.347 5.347 13 C -0.360 4.360 14 H 0.103 0.897 15 C -0.264 4.264 16 N -0.601 5.601 17 Si 0.809 3.191 18 H -0.218 1.218 19 H -0.222 1.222 20 H -0.189 1.189 21 C 0.022 3.978 22 C 0.013 3.987 23 H 0.136 0.864 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.055 0.945 39 H -0.015 1.015 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.037 -5.207 -4.645 20.276 hybrid contribution 1.829 0.627 0.477 1.991 sum -17.209 -4.580 -4.168 18.289 Atomic orbital electron populations 1.22065 0.87612 1.07026 1.05871 1.21929 0.92764 0.82694 0.74345 1.90688 1.72278 1.33560 1.52925 1.47896 1.05843 1.07552 1.71382 1.22259 0.97959 0.85523 0.97569 1.21235 0.97329 1.02451 0.95457 1.20733 0.95132 0.98809 1.01977 1.20944 0.97315 0.99109 0.95159 1.21316 0.94914 0.95855 0.95393 1.23130 0.96723 0.95462 0.99685 1.22121 0.90900 0.96111 0.91784 1.45119 1.13524 1.29454 1.46589 1.19508 0.89834 1.12539 1.14122 0.89659 1.25647 1.02758 0.99113 0.98884 1.69907 1.36337 1.27479 1.26333 0.85040 0.79495 0.78143 0.76468 1.21832 1.22186 1.18885 1.21811 0.87541 0.87313 1.01092 1.21656 0.79786 0.98803 0.98428 0.86441 0.88082 0.88068 0.88853 0.86048 0.87278 0.92539 0.89687 0.92389 0.94149 0.94659 0.90016 0.88284 0.95812 0.92492 0.94536 1.01476 0.89542 0.92095 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 10.01 71.24 0.71 -1.80 16 2 C 0.49 13.88 7.73 87.66 0.68 14.56 16 3 O -0.61 -24.65 16.38 -3.04 -0.05 -24.70 16 4 N -0.60 -15.67 2.28 -818.59 -1.86 -17.54 16 5 C 0.09 1.41 5.09 87.34 0.44 1.86 16 6 C -0.13 -2.03 5.72 29.34 0.17 -1.87 16 7 C -0.13 -3.09 4.95 28.68 0.14 -2.94 16 8 C -0.09 -3.07 4.88 29.79 0.15 -2.92 16 9 C -0.07 -2.73 0.62 -51.98 -0.03 -2.76 16 10 C -0.11 -3.54 4.24 31.70 0.13 -3.41 16 11 C 0.12 4.62 7.28 86.75 0.63 5.26 16 12 N -0.62 -32.60 3.37 -689.79 -2.32 -34.92 16 13 C -0.23 -13.15 10.36 84.03 0.87 -12.27 16 14 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 15 C -0.07 -4.19 5.47 84.86 0.46 -3.72 16 16 N -0.95 -58.89 10.17 21.65 0.22 -58.67 16 17 Si 0.98 46.78 29.56 68.60 2.03 48.80 16 18 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 21 C 0.15 7.67 5.49 86.41 0.47 8.15 16 22 C 0.14 4.84 4.68 86.44 0.40 5.24 16 23 H 0.12 0.90 5.19 -2.39 -0.01 0.89 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.42 5.16 -2.39 -0.01 1.41 16 27 H 0.12 1.00 5.53 -2.39 -0.01 0.99 16 28 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.94 4.55 -2.38 -0.01 1.93 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.49 7.55 -2.39 -0.02 1.47 16 33 H 0.03 1.48 7.42 -2.39 -0.02 1.46 16 34 H 0.08 2.52 5.85 -2.39 -0.01 2.50 16 35 H 0.10 2.35 5.22 -2.39 -0.01 2.34 16 36 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 39 H -0.03 -1.88 7.47 -2.39 -0.02 -1.89 16 40 H 0.09 5.15 4.68 -2.39 -0.01 5.14 16 41 H 0.06 2.11 7.95 -2.39 -0.02 2.09 16 42 H 0.05 2.06 6.61 -2.39 -0.02 2.04 16 Total: -1.00 -77.57 305.93 4.27 -73.30 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.02 Total: 10.35 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.24 Total: 3.36 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -3.97 Total: -111.12 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -77.57 4.27 -73.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045903813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.835 kcal (2) G-P(sol) polarization free energy of solvation -77.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds