Wall clock time and date at job start Mon Mar 30 2020 01:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99612 * 2 1 4 4 C 1.53009 * 109.46989 * 85.37606 * 3 2 1 5 5 H 1.08994 * 112.73822 * 317.16579 * 4 3 2 6 6 C 1.53497 * 113.46511 * 87.98556 * 4 3 2 7 7 C 1.53244 * 83.42495 * 140.67822 * 6 4 3 8 8 N 1.47066 * 113.46530 * 186.42403 * 4 3 2 9 9 C 1.36934 * 136.05807 * 38.06109 * 8 4 3 10 10 H 1.07993 * 120.00255 * 353.09375 * 9 8 4 11 11 C 1.38816 * 119.99511 * 172.82554 * 9 8 4 12 12 N 1.31614 * 120.00262 * 0.26965 * 11 9 8 13 13 Si 1.86803 * 119.99514 * 180.27487 * 11 9 8 14 14 H 1.48494 * 109.47146 * 90.00048 * 13 11 9 15 15 H 1.48502 * 109.47040 * 209.99691 * 13 11 9 16 16 H 1.48492 * 109.47468 * 329.99642 * 13 11 9 17 17 C 1.34769 * 119.99882 * 179.97438 * 2 1 3 18 18 O 1.21290 * 119.99848 * 184.61753 * 17 2 1 19 19 C 1.50700 * 120.00374 * 4.61616 * 17 2 1 20 20 C 1.54266 * 110.03351 * 273.04055 * 19 17 2 21 21 C 1.54889 * 104.19399 * 217.10411 * 20 19 17 22 22 C 1.54890 * 102.75203 * 37.94030 * 21 20 19 23 23 C 1.53872 * 110.03525 * 155.86976 * 19 17 2 24 24 H 1.09001 * 109.47240 * 24.64327 * 1 2 3 25 25 H 1.09001 * 109.47121 * 144.64568 * 1 2 3 26 26 H 1.09001 * 109.47090 * 264.64773 * 1 2 3 27 27 H 1.08996 * 109.47540 * 325.37443 * 3 2 1 28 28 H 1.09003 * 109.46688 * 205.37059 * 3 2 1 29 29 H 1.08995 * 114.20621 * 254.42775 * 6 4 3 30 30 H 1.08994 * 114.20944 * 27.06242 * 6 4 3 31 31 H 1.08999 * 113.37884 * 219.28768 * 7 6 4 32 32 H 1.08997 * 113.47121 * 88.93315 * 7 6 4 33 33 H 0.97006 * 120.00055 * 180.02562 * 12 11 9 34 34 H 1.09002 * 110.01246 * 34.48570 * 19 17 2 35 35 H 1.08993 * 110.48600 * 335.78489 * 20 19 17 36 36 H 1.08999 * 110.48596 * 98.42634 * 20 19 17 37 37 H 1.09002 * 110.75634 * 279.62485 * 21 20 19 38 38 H 1.09002 * 110.91199 * 156.33348 * 21 20 19 39 39 H 1.08995 * 110.48933 * 203.38251 * 22 21 20 40 40 H 1.09000 * 110.59396 * 80.78864 * 22 21 20 41 41 H 1.08994 * 110.03947 * 238.57753 * 23 19 17 42 42 H 1.09009 * 110.03099 * 359.95783 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3517 1.7686 1.4379 5 1 1.4396 1.6548 2.0236 6 6 3.6036 1.2273 2.1422 7 6 3.6791 2.6462 2.7161 8 7 2.9435 3.1117 1.5307 9 6 2.8538 4.2798 0.8218 10 1 2.3023 4.3073 -0.1063 11 6 3.4672 5.4301 1.2989 12 7 4.1394 5.3966 2.4300 13 14 3.3384 7.0254 0.3357 14 1 2.1390 7.7782 0.7829 15 1 4.5538 7.8455 0.5714 16 1 3.2201 6.7209 -1.1129 17 6 2.1389 -1.1671 0.0005 18 8 3.3488 -1.1688 0.0851 19 6 1.3891 -2.4702 -0.1039 20 6 0.9588 -2.9463 1.2989 21 6 1.1193 -4.4858 1.2434 22 6 2.4053 -4.6653 0.3990 23 6 2.3087 -3.5632 -0.6761 24 1 -0.3634 0.9341 -0.4285 25 1 -0.3633 -0.8382 -0.5946 26 1 -0.3633 -0.0959 1.0232 27 1 1.6468 2.0063 -0.5839 28 1 3.1833 1.1191 -0.4403 29 1 3.4005 0.4538 2.8827 30 1 4.4215 0.9740 1.4678 31 1 4.6957 3.0348 2.7764 32 1 3.1247 2.7682 3.6466 33 1 4.5678 6.2005 2.7636 34 1 0.5140 -2.3469 -0.7420 35 1 1.6109 -2.5220 2.0624 36 1 -0.0800 -2.6777 1.4910 37 1 0.2643 -4.9457 0.7476 38 1 1.2526 -4.8994 2.2430 39 1 2.4221 -5.6510 -0.0658 40 1 3.2923 -4.5200 1.0156 41 1 1.8796 -3.9709 -1.5913 42 1 3.2972 -3.1509 -0.8790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085451751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:39 Heat of formation + Delta-G solvation = 13.508192 kcal Electronic energy + Delta-G solvation = -21033.903358 eV Core-core repulsion = 18015.504100 eV Total energy + Delta-G solvation = -3018.399258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.18380 -38.15815 -36.90650 -35.15904 -32.16279 -29.96584 -28.80237 -27.94796 -27.80928 -26.17024 -23.35580 -22.66909 -20.99698 -20.66892 -19.10644 -18.53069 -17.38568 -16.59844 -16.08948 -15.36944 -15.21889 -14.91447 -14.31410 -13.92153 -13.61465 -13.52905 -13.20099 -12.87257 -12.67582 -12.11379 -12.01742 -11.73092 -11.44683 -11.31925 -11.22485 -11.20147 -11.03553 -10.90339 -10.78324 -10.71052 -10.55616 -10.35954 -9.81242 -9.73782 -9.49992 -9.28538 -8.74744 -8.20462 -6.80848 -5.73107 -3.04891 2.86467 3.24289 3.40812 3.45399 3.47788 4.37700 4.48497 4.51691 4.58265 4.93068 5.09754 5.26781 5.32138 5.33691 5.36394 5.46918 5.48544 5.53297 5.55688 5.67178 5.71902 5.74387 5.78689 5.91097 5.99833 6.04873 6.09372 6.13626 6.19658 6.27165 6.46574 6.61089 6.74761 6.84507 6.90632 7.31541 7.53346 7.63250 7.67803 8.02492 8.46087 9.07465 9.74617 10.71777 11.45307 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038302 B = 0.004266 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.856377 B = 6561.511653 C = 6796.379539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.115 3.885 4 C 0.131 3.869 5 H 0.039 0.961 6 C -0.155 4.155 7 C 0.157 3.843 8 N -0.602 5.602 9 C -0.218 4.218 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.515 3.485 18 O -0.532 6.532 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.115 4.115 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.253 0.747 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 -18.574 -4.145 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C -0.008 4.008 4 C 0.023 3.977 5 H 0.056 0.944 6 C -0.193 4.193 7 C 0.031 3.969 8 N -0.328 5.328 9 C -0.346 4.346 10 H 0.097 0.903 11 C -0.203 4.203 12 N -0.564 5.564 13 Si 0.740 3.260 14 H -0.216 1.216 15 H -0.216 1.216 16 H -0.206 1.206 17 C 0.302 3.698 18 O -0.408 6.408 19 C -0.135 4.135 20 C -0.147 4.147 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.153 4.153 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.246 -18.168 -4.183 20.386 hybrid contribution -0.413 1.156 -0.352 1.277 sum -8.659 -17.013 -4.535 19.621 Atomic orbital electron populations 1.21803 0.80179 1.02826 1.01664 1.47902 1.06706 1.06622 1.73201 1.21917 0.97357 0.82434 0.99118 1.22420 0.95150 0.86984 0.93150 0.94385 1.23575 0.98570 0.97334 0.99868 1.21899 0.97490 0.87877 0.89611 1.45628 1.49584 1.07236 1.30311 1.18875 1.29350 0.84907 1.01449 0.90313 1.24824 1.00835 0.97528 0.97158 1.69856 1.37911 1.27758 1.20911 0.86155 0.77122 0.83624 0.79082 1.21650 1.21641 1.20605 1.20500 0.88012 0.85067 0.76180 1.90683 1.14097 1.86884 1.49142 1.21987 0.99190 0.93329 0.99015 1.22277 1.01408 0.95901 0.95159 1.22492 0.97961 0.95413 1.00167 1.22339 0.98182 0.98154 0.97328 1.22127 1.00814 0.94521 0.97858 0.90860 0.91549 0.92669 0.91109 0.89617 0.93360 0.90107 0.91994 0.95800 0.93678 0.89170 0.90909 0.91105 0.91487 0.91405 0.91796 0.91304 0.91798 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.25 59.85 0.61 1.46 16 2 N -0.61 -9.16 2.87 -181.56 -0.52 -9.68 16 3 C 0.11 2.16 5.41 -4.04 -0.02 2.13 16 4 C 0.13 2.81 4.32 -72.40 -0.31 2.50 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.16 -3.33 7.74 -26.35 -0.20 -3.54 16 7 C 0.16 3.96 7.23 -8.65 -0.06 3.89 16 8 N -0.60 -15.89 3.64 -177.17 -0.65 -16.53 16 9 C -0.22 -6.18 10.55 -15.06 -0.16 -6.34 16 10 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -27.99 11.71 55.49 0.65 -27.34 16 13 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.51 7.85 6.66 -10.99 -0.07 7.78 16 18 O -0.53 -10.15 14.83 5.55 0.08 -10.07 16 19 C -0.11 -1.25 2.56 -90.66 -0.23 -1.48 16 20 C -0.11 -1.07 6.33 -25.07 -0.16 -1.23 16 21 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16 22 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 23 C -0.12 -1.23 6.33 -25.61 -0.16 -1.39 16 24 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 25 H 0.07 0.54 6.03 -51.93 -0.31 0.23 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 28 H 0.09 1.80 7.06 -51.93 -0.37 1.43 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.82 7.92 -51.93 -0.41 1.41 16 31 H 0.06 1.70 7.47 -51.93 -0.39 1.32 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.09 0.81 6.23 -51.93 -0.32 0.49 16 35 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.12 6.69 -51.92 -0.35 0.77 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -32.94 333.17 -8.80 -41.74 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.15 Total: -1.49 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.21 Total: 1.00 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.52 Total: -53.56 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.94 -8.80 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085451751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.247 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds