Wall clock time and date at job start Mon Mar 30 2020 01:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99612 * 2 1 4 4 C 1.53009 * 109.46989 * 85.37606 * 3 2 1 5 5 H 1.08994 * 112.73822 * 317.16579 * 4 3 2 6 6 C 1.53497 * 113.46511 * 87.98556 * 4 3 2 7 7 C 1.53244 * 83.42495 * 140.67822 * 6 4 3 8 8 N 1.47066 * 113.46530 * 186.42403 * 4 3 2 9 9 C 1.36934 * 136.05807 * 38.06109 * 8 4 3 10 10 H 1.07993 * 120.00255 * 353.09375 * 9 8 4 11 11 C 1.38816 * 119.99511 * 172.82554 * 9 8 4 12 12 N 1.31614 * 120.00262 * 0.26965 * 11 9 8 13 13 Si 1.86803 * 119.99514 * 180.27487 * 11 9 8 14 14 H 1.48494 * 109.47146 * 90.00048 * 13 11 9 15 15 H 1.48502 * 109.47040 * 209.99691 * 13 11 9 16 16 H 1.48492 * 109.47468 * 329.99642 * 13 11 9 17 17 C 1.34769 * 119.99882 * 179.97438 * 2 1 3 18 18 O 1.21290 * 119.99848 * 184.61753 * 17 2 1 19 19 C 1.50700 * 120.00374 * 4.61616 * 17 2 1 20 20 C 1.54266 * 110.03351 * 273.04055 * 19 17 2 21 21 C 1.54889 * 104.19399 * 217.10411 * 20 19 17 22 22 C 1.54890 * 102.75203 * 37.94030 * 21 20 19 23 23 C 1.53872 * 110.03525 * 155.86976 * 19 17 2 24 24 H 1.09001 * 109.47240 * 24.64327 * 1 2 3 25 25 H 1.09001 * 109.47121 * 144.64568 * 1 2 3 26 26 H 1.09001 * 109.47090 * 264.64773 * 1 2 3 27 27 H 1.08996 * 109.47540 * 325.37443 * 3 2 1 28 28 H 1.09003 * 109.46688 * 205.37059 * 3 2 1 29 29 H 1.08995 * 114.20621 * 254.42775 * 6 4 3 30 30 H 1.08994 * 114.20944 * 27.06242 * 6 4 3 31 31 H 1.08999 * 113.37884 * 219.28768 * 7 6 4 32 32 H 1.08997 * 113.47121 * 88.93315 * 7 6 4 33 33 H 0.97006 * 120.00055 * 180.02562 * 12 11 9 34 34 H 1.09002 * 110.01246 * 34.48570 * 19 17 2 35 35 H 1.08993 * 110.48600 * 335.78489 * 20 19 17 36 36 H 1.08999 * 110.48596 * 98.42634 * 20 19 17 37 37 H 1.09002 * 110.75634 * 279.62485 * 21 20 19 38 38 H 1.09002 * 110.91199 * 156.33348 * 21 20 19 39 39 H 1.08995 * 110.48933 * 203.38251 * 22 21 20 40 40 H 1.09000 * 110.59396 * 80.78864 * 22 21 20 41 41 H 1.08994 * 110.03947 * 238.57753 * 23 19 17 42 42 H 1.09009 * 110.03099 * 359.95783 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3517 1.7686 1.4379 5 1 1.4396 1.6548 2.0236 6 6 3.6036 1.2273 2.1422 7 6 3.6791 2.6462 2.7161 8 7 2.9435 3.1117 1.5307 9 6 2.8538 4.2798 0.8218 10 1 2.3023 4.3073 -0.1063 11 6 3.4672 5.4301 1.2989 12 7 4.1394 5.3966 2.4300 13 14 3.3384 7.0254 0.3357 14 1 2.1390 7.7782 0.7829 15 1 4.5538 7.8455 0.5714 16 1 3.2201 6.7209 -1.1129 17 6 2.1389 -1.1671 0.0005 18 8 3.3488 -1.1688 0.0851 19 6 1.3891 -2.4702 -0.1039 20 6 0.9588 -2.9463 1.2989 21 6 1.1193 -4.4858 1.2434 22 6 2.4053 -4.6653 0.3990 23 6 2.3087 -3.5632 -0.6761 24 1 -0.3634 0.9341 -0.4285 25 1 -0.3633 -0.8382 -0.5946 26 1 -0.3633 -0.0959 1.0232 27 1 1.6468 2.0063 -0.5839 28 1 3.1833 1.1191 -0.4403 29 1 3.4005 0.4538 2.8827 30 1 4.4215 0.9740 1.4678 31 1 4.6957 3.0348 2.7764 32 1 3.1247 2.7682 3.6466 33 1 4.5678 6.2005 2.7636 34 1 0.5140 -2.3469 -0.7420 35 1 1.6109 -2.5220 2.0624 36 1 -0.0800 -2.6777 1.4910 37 1 0.2643 -4.9457 0.7476 38 1 1.2526 -4.8994 2.2430 39 1 2.4221 -5.6510 -0.0658 40 1 3.2923 -4.5200 1.0156 41 1 1.8796 -3.9709 -1.5913 42 1 3.2972 -3.1509 -0.8790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085451751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:38 Heat of formation + Delta-G solvation = -6.557213 kcal Electronic energy + Delta-G solvation = -21034.773460 eV Core-core repulsion = 18015.504100 eV Total energy + Delta-G solvation = -3019.269360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36500 -39.87007 -37.92237 -36.43935 -34.29303 -31.09385 -29.94186 -29.55758 -29.08353 -27.28163 -25.43182 -24.24114 -22.03639 -21.50168 -21.03679 -19.58792 -18.78346 -18.27715 -17.35327 -16.88585 -16.54466 -16.06047 -15.79112 -15.59380 -15.21284 -14.56997 -14.25573 -14.07112 -13.87817 -13.77604 -13.44039 -13.14718 -12.99963 -12.73245 -12.63335 -12.46842 -12.27134 -12.15211 -11.98157 -11.87520 -11.85290 -11.67488 -11.59064 -11.34708 -11.17824 -10.87387 -10.60195 -9.57976 -8.91868 -7.91891 -5.25706 1.44525 1.47535 1.55906 1.70560 2.05228 2.48319 3.28627 3.39797 3.55503 3.73960 3.78434 3.85649 4.11793 4.22842 4.32946 4.37571 4.42956 4.52141 4.57972 4.58823 4.66794 4.71088 4.79751 4.83780 4.85585 4.96945 4.99081 5.02358 5.06031 5.11728 5.18415 5.27122 5.29576 5.40129 5.45987 5.52206 5.53735 5.71345 5.90274 6.51931 6.88156 7.28367 7.58833 8.60948 9.27420 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038302 B = 0.004266 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.856377 B = 6561.511653 C = 6796.379539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.129 3.871 4 C 0.139 3.861 5 H 0.051 0.949 6 C -0.131 4.131 7 C 0.154 3.846 8 N -0.628 5.628 9 C -0.226 4.226 10 H 0.091 0.909 11 C -0.070 4.070 12 N -0.957 5.957 13 Si 0.981 3.019 14 H -0.283 1.283 15 H -0.297 1.297 16 H -0.265 1.265 17 C 0.507 3.493 18 O -0.580 6.580 19 C -0.106 4.106 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.118 4.118 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.248 0.752 34 H 0.122 0.878 35 H 0.045 0.955 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.883 -20.202 -5.375 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.343 5.343 3 C 0.005 3.995 4 C 0.032 3.968 5 H 0.069 0.931 6 C -0.169 4.169 7 C 0.028 3.972 8 N -0.355 5.355 9 C -0.354 4.354 10 H 0.108 0.892 11 C -0.263 4.263 12 N -0.606 5.606 13 Si 0.809 3.191 14 H -0.210 1.210 15 H -0.224 1.224 16 H -0.189 1.189 17 C 0.297 3.703 18 O -0.460 6.460 19 C -0.127 4.127 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.156 4.156 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.140 0.860 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.219 -19.838 -5.433 23.429 hybrid contribution 0.502 1.587 0.042 1.665 sum -10.717 -18.250 -5.390 21.840 Atomic orbital electron populations 1.22116 0.77117 1.04639 1.03185 1.47971 1.08480 1.05048 1.72825 1.21435 0.96789 0.84493 0.96811 1.22479 0.95037 0.84243 0.95048 0.93114 1.23304 0.98331 0.95710 0.99582 1.21852 0.95563 0.90065 0.89705 1.45937 1.50644 1.08455 1.30450 1.19336 1.28444 0.85635 1.01951 0.89172 1.25733 1.01029 1.01101 0.98426 1.70056 1.39392 1.28239 1.22891 0.85034 0.76656 0.79018 0.78379 1.21008 1.22366 1.18948 1.21380 0.87746 0.86344 0.74816 1.90668 1.16484 1.87635 1.51186 1.22076 0.99565 0.90498 1.00538 1.22313 1.02134 0.96911 0.93363 1.22493 0.97965 0.94286 1.00532 1.22352 0.98171 0.98625 0.97008 1.22156 0.99200 0.94853 0.99373 0.90521 0.88046 0.91566 0.90764 0.92451 0.91047 0.91571 0.95364 0.96259 0.94334 0.85995 0.93617 0.88607 0.89080 0.90878 0.89948 0.93430 0.89480 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 10.25 127.77 1.31 2.58 16 2 N -0.61 -17.23 2.87 -846.73 -2.43 -19.67 16 3 C 0.13 4.81 5.41 86.38 0.47 5.27 16 4 C 0.14 5.92 4.32 41.79 0.18 6.10 16 5 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 6 C -0.13 -5.72 7.74 30.84 0.24 -5.48 16 7 C 0.15 8.04 7.23 83.09 0.60 8.64 16 8 N -0.63 -33.73 3.64 -714.44 -2.60 -36.33 16 9 C -0.23 -12.88 10.55 84.03 0.89 -11.99 16 10 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 11 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 12 N -0.96 -60.15 11.71 21.65 0.25 -59.89 16 13 Si 0.98 46.47 29.55 68.60 2.03 48.50 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 16 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 17 C 0.51 14.92 6.66 87.66 0.58 15.51 16 18 O -0.58 -22.64 14.83 -3.06 -0.05 -22.68 16 19 C -0.11 -2.03 2.56 -10.82 -0.03 -2.05 16 20 C -0.11 -1.81 6.33 31.67 0.20 -1.61 16 21 C -0.12 -1.52 6.91 31.89 0.22 -1.30 16 22 C -0.12 -2.07 6.83 31.67 0.22 -1.85 16 23 C -0.12 -2.31 6.33 31.32 0.20 -2.11 16 24 H 0.08 1.35 7.88 -2.39 -0.02 1.34 16 25 H 0.10 1.12 6.03 -2.39 -0.01 1.11 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 28 H 0.06 2.46 7.06 -2.39 -0.02 2.44 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.07 3.09 7.92 -2.39 -0.02 3.07 16 31 H 0.03 1.63 7.47 -2.39 -0.02 1.61 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 34 H 0.12 1.57 6.23 -2.39 -0.01 1.55 16 35 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 1.35 6.69 -2.38 -0.02 1.34 16 Total: -1.00 -74.46 333.17 3.72 -70.74 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.98 Total: 11.25 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.54 Total: 8.08 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -4.78 Total: -115.89 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -74.46 3.72 -70.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085451751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.187 kcal (2) G-P(sol) polarization free energy of solvation -74.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds