Wall clock time and date at job start Mon Mar 30 2020 01:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00379 * 2 1 4 4 C 1.52994 * 109.47019 * 95.01062 * 3 2 1 5 5 H 1.08992 * 112.74155 * 45.34746 * 4 3 2 6 6 C 1.53497 * 113.46833 * 274.59410 * 4 3 2 7 7 C 1.53611 * 83.30830 * 219.17566 * 6 4 3 8 8 N 1.47068 * 88.00253 * 26.02348 * 7 6 4 9 9 C 1.36941 * 136.05392 * 152.89727 * 8 7 6 10 10 H 1.08003 * 119.99792 * 175.16988 * 9 8 7 11 11 C 1.38805 * 120.00380 * 355.17339 * 9 8 7 12 12 N 1.31627 * 119.99967 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00427 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47179 * 89.99709 * 13 11 9 15 15 H 1.48501 * 109.47343 * 209.99876 * 13 11 9 16 16 H 1.48504 * 109.46780 * 330.00003 * 13 11 9 17 17 C 1.34783 * 119.99500 * 180.26713 * 2 1 3 18 18 O 1.21284 * 119.99423 * 174.92053 * 17 2 1 19 19 C 1.50699 * 120.00330 * 354.92528 * 17 2 1 20 20 C 1.54270 * 110.03032 * 297.90793 * 19 17 2 21 21 C 1.54964 * 104.16003 * 217.13865 * 20 19 17 22 22 C 1.54892 * 102.77725 * 37.88286 * 21 20 19 23 23 C 1.53869 * 110.03538 * 180.68738 * 19 17 2 24 24 H 1.09003 * 109.47561 * 269.73371 * 1 2 3 25 25 H 1.09003 * 109.47103 * 29.72819 * 1 2 3 26 26 H 1.08997 * 109.47540 * 149.72753 * 1 2 3 27 27 H 1.08999 * 109.46964 * 215.01095 * 3 2 1 28 28 H 1.08996 * 109.46745 * 335.01062 * 3 2 1 29 29 H 1.08996 * 114.20997 * 332.75133 * 6 4 3 30 30 H 1.09004 * 114.20448 * 105.57018 * 6 4 3 31 31 H 1.09006 * 113.41107 * 271.24466 * 7 6 4 32 32 H 1.08996 * 113.56027 * 140.82768 * 7 6 4 33 33 H 0.96993 * 120.00274 * 180.02562 * 12 11 9 34 34 H 1.08997 * 110.01521 * 59.28784 * 19 17 2 35 35 H 1.09006 * 110.48541 * 335.77963 * 20 19 17 36 36 H 1.08997 * 110.49170 * 98.42365 * 20 19 17 37 37 H 1.08998 * 110.71772 * 279.57444 * 21 20 19 38 38 H 1.08991 * 110.92714 * 156.29230 * 21 20 19 39 39 H 1.09004 * 110.48669 * 203.40795 * 22 21 20 40 40 H 1.09000 * 110.48714 * 80.76909 * 22 21 20 41 41 H 1.08993 * 110.03422 * 238.56626 * 23 19 17 42 42 H 1.09004 * 110.02867 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5617 1.6473 1.4369 5 1 2.9636 0.8083 2.0048 6 6 1.4461 2.4040 2.1711 7 6 2.6183 3.2185 2.7386 8 7 3.3810 2.8649 1.5319 9 6 4.4037 3.4239 0.8129 10 1 4.8337 2.8881 -0.0205 11 6 4.8877 4.6790 1.1550 12 7 4.3633 5.3322 2.1704 13 14 6.2821 5.4418 0.1737 14 1 5.7210 6.2375 -0.9475 15 1 7.0826 6.3273 1.0572 16 1 7.1515 4.3669 -0.3686 17 6 2.1388 -1.1673 -0.0054 18 8 3.3481 -1.1689 -0.0985 19 6 1.3897 -2.4703 0.1039 20 6 0.6388 -2.5368 1.4499 21 6 0.7585 -4.0214 1.8779 22 6 2.1949 -4.3917 1.4320 23 6 2.3783 -3.6493 0.0921 24 1 -0.3634 -0.0048 1.0277 25 1 -0.3633 0.8924 -0.5096 26 1 -0.3634 -0.8875 -0.5180 27 1 3.1081 1.1624 -0.5896 28 1 1.5726 2.0490 -0.4341 29 1 0.7841 2.9702 1.5160 30 1 0.9149 1.8076 2.9130 31 1 3.0347 2.7981 3.6541 32 1 2.4079 4.2847 2.8223 33 1 4.7013 6.2095 2.4093 34 1 0.6847 -2.5658 -0.7219 35 1 1.1156 -1.8884 2.1851 36 1 -0.4072 -2.2603 1.3174 37 1 0.0224 -4.6334 1.3567 38 1 0.6503 -4.1252 2.9574 39 1 2.2836 -5.4683 1.2868 40 1 2.9234 -4.0432 2.1641 41 1 2.1527 -4.3175 -0.7388 42 1 3.4000 -3.2790 0.0078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085451752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:42 Heat of formation + Delta-G solvation = 13.381566 kcal Electronic energy + Delta-G solvation = -21118.312133 eV Core-core repulsion = 18099.907383 eV Total energy + Delta-G solvation = -3018.404749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21085 -38.17272 -36.91852 -35.18567 -32.13675 -29.98144 -28.76249 -27.90814 -27.84551 -26.12536 -23.40299 -22.67038 -21.03792 -20.60446 -19.20137 -18.50773 -17.30081 -16.70534 -16.04527 -15.40005 -15.23827 -14.82055 -14.33116 -14.04015 -13.61518 -13.48728 -13.13954 -12.80375 -12.62945 -12.43091 -11.82470 -11.73119 -11.48201 -11.36644 -11.18378 -11.15256 -11.01708 -10.88169 -10.76217 -10.72116 -10.55387 -10.37909 -9.79702 -9.75061 -9.57476 -9.31727 -8.72999 -8.21260 -6.80814 -5.69795 -3.03094 2.87550 3.25038 3.43695 3.48900 3.51524 4.37842 4.48926 4.52238 4.62363 4.97087 5.12803 5.25486 5.28596 5.35317 5.38828 5.47157 5.49658 5.54262 5.56484 5.59615 5.71117 5.74401 5.81226 5.84337 5.97955 6.04313 6.09067 6.21056 6.23151 6.32096 6.36106 6.51425 6.63134 6.74394 6.93347 7.29617 7.49328 7.64628 7.66860 8.06066 8.46115 9.10989 9.77336 10.71373 11.46952 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.004684 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.225675 B = 5975.988413 C = 6322.905793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.610 5.610 3 C 0.116 3.884 4 C 0.136 3.864 5 H 0.042 0.958 6 C -0.165 4.165 7 C 0.148 3.852 8 N -0.600 5.600 9 C -0.213 4.213 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.513 3.487 18 O -0.534 6.534 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.120 4.120 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.020 0.980 32 H 0.076 0.924 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.706 -16.403 -2.303 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C -0.007 4.007 4 C 0.028 3.972 5 H 0.059 0.941 6 C -0.203 4.203 7 C 0.022 3.978 8 N -0.326 5.326 9 C -0.341 4.341 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.300 3.700 18 O -0.411 6.411 19 C -0.133 4.133 20 C -0.151 4.151 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.158 4.158 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.786 -16.107 -2.450 20.108 hybrid contribution 0.742 0.497 -0.395 0.977 sum -11.044 -15.610 -2.845 19.332 Atomic orbital electron populations 1.21834 0.80089 1.02534 1.01807 1.47848 1.06717 1.06497 1.73280 1.21879 0.96891 0.82608 0.99332 1.22389 0.90483 0.91230 0.93129 0.94098 1.23721 0.96804 0.99835 0.99988 1.22109 0.86894 0.99636 0.89125 1.45636 1.39774 1.19835 1.27376 1.18934 1.08368 0.98112 1.08643 0.90278 1.24768 1.00128 0.96967 0.98558 1.69829 1.43976 1.14012 1.29022 0.86130 0.81687 0.79048 0.79016 1.21535 1.21676 1.20635 1.20549 0.87977 0.85333 0.76101 1.90691 1.14314 1.86902 1.49167 1.21923 0.98216 0.93325 0.99796 1.22406 0.99921 0.97424 0.95392 1.22511 0.97098 0.95683 1.00827 1.22363 0.96873 0.99687 0.97252 1.22166 1.01158 0.95014 0.97452 0.92477 0.91102 0.91614 0.90336 0.90399 0.90607 0.92997 0.96243 0.90545 0.93775 0.88875 0.90920 0.90875 0.91482 0.91428 0.91732 0.91467 0.91746 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 9.04 59.85 0.54 1.37 16 2 N -0.61 -9.14 2.88 -181.57 -0.52 -9.67 16 3 C 0.12 2.19 5.38 -4.04 -0.02 2.17 16 4 C 0.14 2.92 4.28 -72.39 -0.31 2.61 16 5 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 6 C -0.17 -3.16 8.02 -26.16 -0.21 -3.37 16 7 C 0.15 3.61 7.52 -8.44 -0.06 3.55 16 8 N -0.60 -15.96 3.65 -176.79 -0.64 -16.61 16 9 C -0.21 -6.19 10.55 -15.06 -0.16 -6.35 16 10 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.97 11.42 55.49 0.63 -27.33 16 13 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.51 8.17 6.86 -10.98 -0.08 8.09 16 18 O -0.53 -11.01 14.84 5.55 0.08 -10.93 16 19 C -0.11 -1.26 2.43 -90.65 -0.22 -1.48 16 20 C -0.11 -1.10 5.15 -25.03 -0.13 -1.23 16 21 C -0.12 -1.05 6.91 -24.70 -0.17 -1.22 16 22 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 23 C -0.12 -1.37 6.40 -25.62 -0.16 -1.54 16 24 H 0.06 0.53 7.72 -51.93 -0.40 0.13 16 25 H 0.07 0.67 7.86 -51.93 -0.41 0.27 16 26 H 0.07 0.51 6.26 -51.93 -0.32 0.19 16 27 H 0.08 1.72 7.50 -51.93 -0.39 1.33 16 28 H 0.08 1.40 7.59 -51.93 -0.39 1.00 16 29 H 0.08 1.39 7.95 -51.93 -0.41 0.97 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 2.04 6.92 -51.93 -0.36 1.68 16 33 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.09 0.86 7.23 -51.93 -0.38 0.49 16 35 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 36 H 0.07 0.55 7.26 -51.93 -0.38 0.18 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.30 6.39 -51.93 -0.33 0.97 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -33.76 330.34 -8.86 -42.62 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -7.11 Total: -1.79 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.25 Total: 0.89 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.53 Total: -53.61 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.76 -8.86 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085451752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.001 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds