Wall clock time and date at job start Mon Mar 30 2020 01:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00379 * 2 1 4 4 C 1.52994 * 109.47019 * 95.01062 * 3 2 1 5 5 H 1.08992 * 112.74155 * 45.34746 * 4 3 2 6 6 C 1.53497 * 113.46833 * 274.59410 * 4 3 2 7 7 C 1.53611 * 83.30830 * 219.17566 * 6 4 3 8 8 N 1.47068 * 88.00253 * 26.02348 * 7 6 4 9 9 C 1.36941 * 136.05392 * 152.89727 * 8 7 6 10 10 H 1.08003 * 119.99792 * 175.16988 * 9 8 7 11 11 C 1.38805 * 120.00380 * 355.17339 * 9 8 7 12 12 N 1.31627 * 119.99967 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00427 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47179 * 89.99709 * 13 11 9 15 15 H 1.48501 * 109.47343 * 209.99876 * 13 11 9 16 16 H 1.48504 * 109.46780 * 330.00003 * 13 11 9 17 17 C 1.34783 * 119.99500 * 180.26713 * 2 1 3 18 18 O 1.21284 * 119.99423 * 174.92053 * 17 2 1 19 19 C 1.50699 * 120.00330 * 354.92528 * 17 2 1 20 20 C 1.54270 * 110.03032 * 297.90793 * 19 17 2 21 21 C 1.54964 * 104.16003 * 217.13865 * 20 19 17 22 22 C 1.54892 * 102.77725 * 37.88286 * 21 20 19 23 23 C 1.53869 * 110.03538 * 180.68738 * 19 17 2 24 24 H 1.09003 * 109.47561 * 269.73371 * 1 2 3 25 25 H 1.09003 * 109.47103 * 29.72819 * 1 2 3 26 26 H 1.08997 * 109.47540 * 149.72753 * 1 2 3 27 27 H 1.08999 * 109.46964 * 215.01095 * 3 2 1 28 28 H 1.08996 * 109.46745 * 335.01062 * 3 2 1 29 29 H 1.08996 * 114.20997 * 332.75133 * 6 4 3 30 30 H 1.09004 * 114.20448 * 105.57018 * 6 4 3 31 31 H 1.09006 * 113.41107 * 271.24466 * 7 6 4 32 32 H 1.08996 * 113.56027 * 140.82768 * 7 6 4 33 33 H 0.96993 * 120.00274 * 180.02562 * 12 11 9 34 34 H 1.08997 * 110.01521 * 59.28784 * 19 17 2 35 35 H 1.09006 * 110.48541 * 335.77963 * 20 19 17 36 36 H 1.08997 * 110.49170 * 98.42365 * 20 19 17 37 37 H 1.08998 * 110.71772 * 279.57444 * 21 20 19 38 38 H 1.08991 * 110.92714 * 156.29230 * 21 20 19 39 39 H 1.09004 * 110.48669 * 203.40795 * 22 21 20 40 40 H 1.09000 * 110.48714 * 80.76909 * 22 21 20 41 41 H 1.08993 * 110.03422 * 238.56626 * 23 19 17 42 42 H 1.09004 * 110.02867 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5617 1.6473 1.4369 5 1 2.9636 0.8083 2.0048 6 6 1.4461 2.4040 2.1711 7 6 2.6183 3.2185 2.7386 8 7 3.3810 2.8649 1.5319 9 6 4.4037 3.4239 0.8129 10 1 4.8337 2.8881 -0.0205 11 6 4.8877 4.6790 1.1550 12 7 4.3633 5.3322 2.1704 13 14 6.2821 5.4418 0.1737 14 1 5.7210 6.2375 -0.9475 15 1 7.0826 6.3273 1.0572 16 1 7.1515 4.3669 -0.3686 17 6 2.1388 -1.1673 -0.0054 18 8 3.3481 -1.1689 -0.0985 19 6 1.3897 -2.4703 0.1039 20 6 0.6388 -2.5368 1.4499 21 6 0.7585 -4.0214 1.8779 22 6 2.1949 -4.3917 1.4320 23 6 2.3783 -3.6493 0.0921 24 1 -0.3634 -0.0048 1.0277 25 1 -0.3633 0.8924 -0.5096 26 1 -0.3634 -0.8875 -0.5180 27 1 3.1081 1.1624 -0.5896 28 1 1.5726 2.0490 -0.4341 29 1 0.7841 2.9702 1.5160 30 1 0.9149 1.8076 2.9130 31 1 3.0347 2.7981 3.6541 32 1 2.4079 4.2847 2.8223 33 1 4.7013 6.2095 2.4093 34 1 0.6847 -2.5658 -0.7219 35 1 1.1156 -1.8884 2.1851 36 1 -0.4072 -2.2603 1.3174 37 1 0.0224 -4.6334 1.3567 38 1 0.6503 -4.1252 2.9574 39 1 2.2836 -5.4683 1.2868 40 1 2.9234 -4.0432 2.1641 41 1 2.1527 -4.3175 -0.7388 42 1 3.4000 -3.2790 0.0078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085451752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:41 Heat of formation + Delta-G solvation = -8.176184 kcal Electronic energy + Delta-G solvation = -21119.246947 eV Core-core repulsion = 18099.907383 eV Total energy + Delta-G solvation = -3019.339564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41397 -39.86277 -37.94390 -36.49989 -34.30083 -31.12407 -29.93140 -29.56933 -29.03142 -27.22575 -25.44854 -24.22709 -22.02670 -21.51386 -21.04041 -19.64667 -18.74746 -18.32415 -17.34273 -16.93666 -16.50009 -16.13619 -15.92962 -15.37836 -15.29402 -14.55519 -14.34342 -14.13129 -13.88519 -13.71626 -13.46808 -13.14348 -12.96032 -12.67595 -12.61834 -12.48423 -12.27032 -12.17857 -12.00226 -11.83727 -11.77126 -11.66001 -11.62008 -11.39037 -11.26119 -10.87693 -10.65628 -9.57199 -8.93380 -7.92708 -5.27567 1.41118 1.43588 1.52379 1.66434 2.05541 2.46073 3.26864 3.45012 3.49378 3.67586 3.77635 3.84912 4.10487 4.27387 4.31948 4.38249 4.49373 4.53385 4.57480 4.60918 4.69460 4.71375 4.81448 4.85439 4.90472 4.96485 5.00898 5.04248 5.06879 5.11378 5.21995 5.26201 5.29251 5.40583 5.50318 5.50418 5.54840 5.74944 5.94038 6.50351 6.89566 7.24962 7.57374 8.58854 9.23643 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.004684 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.225675 B = 5975.988413 C = 6322.905793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.131 3.869 4 C 0.136 3.864 5 H 0.019 0.981 6 C -0.123 4.123 7 C 0.137 3.863 8 N -0.631 5.631 9 C -0.228 4.228 10 H 0.071 0.929 11 C -0.062 4.062 12 N -0.950 5.950 13 Si 0.977 3.023 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.278 1.278 17 C 0.502 3.498 18 O -0.596 6.596 19 C -0.102 4.102 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.125 4.125 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.008 0.992 32 H 0.049 0.951 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.046 0.954 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 -17.913 -2.966 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.338 5.338 3 C 0.006 3.994 4 C 0.029 3.971 5 H 0.037 0.963 6 C -0.161 4.161 7 C 0.012 3.988 8 N -0.357 5.357 9 C -0.356 4.356 10 H 0.088 0.912 11 C -0.255 4.255 12 N -0.598 5.598 13 Si 0.804 3.196 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.203 1.203 17 C 0.292 3.708 18 O -0.477 6.477 19 C -0.123 4.123 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.164 4.164 23 C -0.162 4.162 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.145 0.855 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.960 -17.647 -3.115 23.344 hybrid contribution 1.729 0.904 -0.164 1.958 sum -13.232 -16.743 -3.279 21.591 Atomic orbital electron populations 1.22230 0.76428 1.04816 1.03633 1.47918 1.08789 1.04682 1.72458 1.21423 0.96158 0.85067 0.96712 1.22435 0.90450 0.89294 0.94917 0.96332 1.23473 0.94986 0.97942 0.99682 1.22165 0.89320 0.98832 0.88487 1.46044 1.39829 1.21804 1.28071 1.19169 1.09188 0.98476 1.08737 0.91151 1.25578 1.02679 0.97449 0.99784 1.70003 1.45267 1.14113 1.30452 0.85114 0.78693 0.78014 0.77731 1.20430 1.21622 1.20288 1.21531 0.87592 0.86997 0.74640 1.90671 1.17287 1.87869 1.51855 1.22016 0.98192 0.89930 1.02189 1.22443 1.01098 0.97926 0.93375 1.22514 0.96208 0.95010 1.01581 1.22377 0.97734 1.00491 0.95770 1.22191 0.99047 0.95710 0.99293 0.90757 0.89991 0.88352 0.94495 0.89031 0.88841 0.89038 0.97461 0.93230 0.94139 0.85472 0.93481 0.87544 0.88919 0.90772 0.89966 0.93803 0.89601 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 9.04 127.77 1.15 2.28 16 2 N -0.61 -17.30 2.88 -846.76 -2.44 -19.74 16 3 C 0.13 4.97 5.38 86.38 0.46 5.44 16 4 C 0.14 5.93 4.28 41.79 0.18 6.10 16 5 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 6 C -0.12 -4.48 8.02 30.97 0.25 -4.23 16 7 C 0.14 6.83 7.52 83.22 0.63 7.45 16 8 N -0.63 -34.56 3.65 -713.24 -2.60 -37.16 16 9 C -0.23 -13.68 10.55 84.03 0.89 -12.79 16 10 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 11 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 12 N -0.95 -59.17 11.42 21.65 0.25 -58.92 16 13 Si 0.98 48.08 29.55 68.60 2.03 50.11 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 17 C 0.50 15.88 6.86 87.66 0.60 16.49 16 18 O -0.60 -26.00 14.84 -3.04 -0.05 -26.05 16 19 C -0.10 -2.07 2.43 -10.82 -0.03 -2.09 16 20 C -0.11 -1.75 5.15 31.70 0.16 -1.58 16 21 C -0.12 -1.54 6.91 31.91 0.22 -1.32 16 22 C -0.13 -2.29 6.83 31.67 0.22 -2.07 16 23 C -0.12 -2.73 6.40 31.32 0.20 -2.53 16 24 H 0.07 1.00 7.72 -2.39 -0.02 0.98 16 25 H 0.08 1.19 7.86 -2.39 -0.02 1.17 16 26 H 0.10 0.98 6.26 -2.39 -0.01 0.96 16 27 H 0.04 1.70 7.50 -2.39 -0.02 1.68 16 28 H 0.09 3.19 7.59 -2.39 -0.02 3.17 16 29 H 0.09 3.13 7.95 -2.39 -0.02 3.11 16 30 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.05 2.71 6.92 -2.39 -0.02 2.70 16 33 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.13 1.74 7.23 -2.39 -0.02 1.72 16 35 H 0.05 1.00 7.85 -2.38 -0.02 0.98 16 36 H 0.11 1.00 7.26 -2.39 -0.02 0.98 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.51 6.39 -2.38 -0.02 1.49 16 Total: -1.00 -79.38 330.34 3.57 -75.82 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.98 Total: 8.03 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 5.40 Total: 7.92 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -4.80 Total: -115.83 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -79.38 3.57 -75.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085451752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.640 kcal (2) G-P(sol) polarization free energy of solvation -79.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds