Wall clock time and date at job start Mon Mar 30 2020 01:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 120.00053 * 2 1 4 4 N 1.34778 * 120.00324 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00461 * 179.97438 * 4 2 1 6 6 H 1.09003 * 113.34530 * 28.41961 * 5 4 2 7 7 C 1.50010 * 114.12404 * 255.49400 * 5 4 2 8 8 H 1.08995 * 112.50951 * 321.30344 * 7 5 4 9 9 C 1.51207 * 126.16042 * 104.79985 * 7 5 4 10 10 C 1.54092 * 106.29599 * 160.09442 * 9 7 5 11 11 C 1.52524 * 112.66276 * 304.75081 * 10 9 7 12 12 N 1.48409 * 111.95027 * 46.58359 * 11 10 9 13 13 C 1.36945 * 123.16613 * 128.26709 * 12 11 10 14 14 H 1.07998 * 119.99888 * 150.79641 * 13 12 11 15 15 C 1.38813 * 119.99944 * 330.79090 * 13 12 11 16 16 N 1.31615 * 119.99842 * 342.29118 * 15 13 12 17 17 Si 1.86793 * 119.99886 * 162.28553 * 15 13 12 18 18 H 1.48505 * 109.47447 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47148 * 120.00102 * 17 15 13 20 20 H 1.48500 * 109.47300 * 240.00485 * 17 15 13 21 21 C 1.45373 * 113.66309 * 308.24332 * 12 11 10 22 22 H 1.08999 * 112.08868 * 300.25017 * 21 12 11 23 23 C 1.49970 * 126.68076 * 155.98003 * 21 12 11 24 24 C 1.52996 * 114.08275 * 334.29692 * 23 21 12 25 25 C 1.52996 * 114.08731 * 106.55131 * 23 21 12 26 26 H 1.09005 * 109.46692 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46795 * 299.99371 * 1 2 3 28 28 H 1.08996 * 109.47022 * 60.00198 * 1 2 3 29 29 H 0.97008 * 120.00020 * 359.97438 * 4 2 1 30 30 H 1.08999 * 110.10327 * 279.31846 * 9 7 5 31 31 H 1.09003 * 110.10023 * 40.87085 * 9 7 5 32 32 H 1.09004 * 108.84360 * 65.44245 * 10 9 7 33 33 H 1.09002 * 108.84367 * 183.79236 * 10 9 7 34 34 H 1.09001 * 108.89376 * 285.99116 * 11 10 9 35 35 H 1.08999 * 108.95986 * 167.22781 * 11 10 9 36 36 H 0.97000 * 119.99794 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47052 * 65.43746 * 24 23 21 38 38 H 1.09000 * 109.47026 * 185.43658 * 24 23 21 39 39 H 1.09001 * 109.47372 * 305.43248 * 24 23 21 40 40 H 1.08994 * 109.47387 * 59.99399 * 25 23 21 41 41 H 1.09001 * 109.47212 * 179.97438 * 25 23 21 42 42 H 1.09006 * 109.46908 * 300.00009 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0781 -0.2871 0.4752 7 6 4.2585 -1.5099 -1.3268 8 1 3.7116 -2.2950 -1.8488 9 6 4.9074 -0.5390 -2.2874 10 6 5.8046 -1.3821 -3.2141 11 6 6.8087 -2.2339 -2.4442 12 7 6.1738 -2.9508 -1.3103 13 6 6.3021 -4.2995 -1.1105 14 1 6.2573 -4.7038 -0.1101 15 6 6.4897 -5.1468 -2.1939 16 7 6.2025 -4.7336 -3.4100 17 14 7.1499 -6.8735 -1.9257 18 1 7.3916 -7.0917 -0.4768 19 1 6.1586 -7.8643 -2.4164 20 1 8.4241 -7.0375 -2.6706 21 6 5.4033 -2.0863 -0.4315 22 1 6.0165 -1.3023 0.0129 23 6 4.2716 -2.4973 0.4626 24 6 3.5319 -3.7528 -0.0037 25 6 4.6297 -2.5263 1.9498 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6960 -2.0073 -0.0005 30 1 4.1449 -0.0239 -2.8716 31 1 5.5106 0.1843 -1.7386 32 1 5.1737 -2.0395 -3.8124 33 1 6.3468 -0.7136 -3.8828 34 1 7.5973 -1.5878 -2.0586 35 1 7.2486 -2.9637 -3.1238 36 1 6.3340 -5.3256 -4.1671 37 1 4.2034 -4.6099 0.0466 38 1 2.6706 -3.9275 0.6411 39 1 3.1946 -3.6152 -1.0310 40 1 4.9445 -1.5322 2.2672 41 1 3.7576 -2.8326 2.5276 42 1 5.4420 -3.2344 2.1143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087263222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:02 Heat of formation + Delta-G solvation = 21.586291 kcal Electronic energy + Delta-G solvation = -22104.678793 eV Core-core repulsion = 19086.629828 eV Total energy + Delta-G solvation = -3018.048966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98616 -38.70981 -35.27314 -33.16236 -32.87036 -30.39507 -29.63141 -29.08421 -27.11493 -25.70621 -24.27890 -22.20528 -20.88361 -20.00149 -19.18103 -18.30390 -16.77497 -16.37156 -15.78207 -15.01811 -14.57606 -14.14551 -13.89723 -13.72037 -13.42184 -13.11283 -12.75867 -12.64982 -12.49014 -12.38733 -12.14783 -11.70244 -11.55234 -11.29642 -11.14403 -11.02209 -10.89486 -10.72319 -10.41356 -10.23906 -10.05396 -9.94841 -9.68897 -9.47480 -9.28239 -8.88122 -8.53557 -8.37438 -6.54142 -5.77133 -3.19004 2.85668 3.35242 3.44546 3.45157 3.54548 4.48674 4.81652 4.97096 5.02746 5.19023 5.22790 5.31816 5.41113 5.46162 5.64092 5.76181 5.91844 5.93598 5.96981 6.11222 6.15560 6.20893 6.33861 6.37545 6.41774 6.55182 6.56541 6.67729 6.72560 6.81508 6.85618 6.96433 7.05383 7.12628 7.28564 7.50763 7.70994 7.78516 7.82653 8.44375 8.48526 9.16161 9.83052 10.50139 11.29824 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.006612 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.513882 B = 4233.745902 C = 4685.143759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.556 6.556 4 N -0.712 5.712 5 C 0.139 3.861 6 H 0.107 0.893 7 C -0.165 4.165 8 H 0.099 0.901 9 C -0.088 4.088 10 C -0.122 4.122 11 C 0.156 3.844 12 N -0.568 5.568 13 C -0.233 4.233 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.290 1.290 21 C 0.145 3.855 22 H 0.052 0.948 23 C -0.067 4.067 24 C -0.121 4.121 25 C -0.133 4.133 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.399 0.601 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.040 0.960 34 H -0.004 1.004 35 H 0.097 0.903 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 4.765 6.007 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.293 3.707 3 O -0.434 6.434 4 N -0.362 5.362 5 C 0.035 3.965 6 H 0.125 0.875 7 C -0.186 4.186 8 H 0.117 0.883 9 C -0.126 4.126 10 C -0.161 4.161 11 C 0.032 3.968 12 N -0.290 5.290 13 C -0.362 4.362 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.540 5.540 17 Si 0.725 3.275 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.217 1.217 21 C 0.036 3.964 22 H 0.069 0.931 23 C -0.068 4.068 24 C -0.177 4.177 25 C -0.190 4.190 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.234 0.766 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.014 0.986 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.990 5.357 5.859 11.263 hybrid contribution 0.060 -1.314 -0.109 1.320 sum -7.930 4.043 5.750 10.596 Atomic orbital electron populations 1.21852 0.92599 1.03879 1.04804 1.20744 0.90289 0.83946 0.75756 1.90693 1.70782 1.31520 1.50449 1.46219 1.07853 1.08202 1.73944 1.22260 0.78131 0.98032 0.98115 0.87504 1.23391 0.99929 1.00247 0.95067 0.88258 1.21113 0.97496 0.96723 0.97274 1.21809 0.98863 0.97543 0.97851 1.20912 0.91810 0.93919 0.90209 1.43787 1.56169 1.03177 1.25862 1.18990 1.43756 0.81561 0.91895 0.91615 1.24967 1.01570 0.97375 0.95854 1.69966 1.50203 1.35755 0.98115 0.86341 0.78588 0.84978 0.77588 1.20370 1.21927 1.21721 1.21507 0.89327 0.93271 0.92286 0.93103 1.21563 0.96599 0.94178 0.94445 1.21601 0.98748 0.97255 1.00143 1.21717 1.00973 1.01384 0.94915 0.90815 0.89187 0.89114 0.76646 0.94195 0.93366 0.91665 0.94117 0.98576 0.88485 0.93873 0.89766 0.94677 0.91770 0.93136 0.93349 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.39 36.01 0.37 -1.25 16 2 C 0.51 7.34 7.94 -10.98 -0.09 7.25 16 3 O -0.56 -10.52 16.78 5.56 0.09 -10.43 16 4 N -0.71 -10.04 5.33 -61.65 -0.33 -10.36 16 5 C 0.14 2.32 3.30 -75.76 -0.25 2.07 16 6 H 0.11 1.91 7.44 -51.93 -0.39 1.53 16 7 C -0.16 -3.15 2.96 -95.81 -0.28 -3.43 16 8 H 0.10 2.11 5.85 -51.93 -0.30 1.81 16 9 C -0.09 -1.71 6.11 -27.06 -0.17 -1.88 16 10 C -0.12 -2.55 5.91 -26.40 -0.16 -2.71 16 11 C 0.16 3.66 5.76 -3.23 -0.02 3.64 16 12 N -0.57 -13.44 2.91 -173.01 -0.50 -13.94 16 13 C -0.23 -5.92 7.77 -15.06 -0.12 -6.04 16 14 H 0.07 1.67 7.28 -52.49 -0.38 1.29 16 15 C 0.00 0.02 5.06 -17.43 -0.09 -0.07 16 16 N -0.90 -24.54 11.19 55.49 0.62 -23.92 16 17 Si 0.89 20.92 29.59 -169.99 -5.03 15.89 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.14 2.92 3.02 -75.18 -0.23 2.69 16 22 H 0.05 1.04 7.95 -51.93 -0.41 0.63 16 23 C -0.07 -1.13 1.35 -160.03 -0.22 -1.34 16 24 C -0.12 -2.06 7.35 37.16 0.27 -1.78 16 25 C -0.13 -1.99 9.26 37.16 0.34 -1.65 16 26 H 0.07 0.53 7.91 -51.93 -0.41 0.12 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.40 4.73 7.32 -40.82 -0.30 4.44 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.91 8.06 -51.93 -0.42 0.50 16 32 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.00 -0.08 8.14 -51.93 -0.42 -0.51 16 35 H 0.10 2.54 5.69 -51.93 -0.30 2.25 16 36 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.08 1.66 6.10 -51.93 -0.32 1.34 16 38 H 0.03 0.48 7.92 -51.93 -0.41 0.07 16 39 H 0.06 1.20 5.91 -51.93 -0.31 0.89 16 40 H 0.05 0.72 7.99 -51.93 -0.41 0.31 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -29.36 322.15 -7.78 -37.15 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.88 Total: 5.27 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.62 Total: -4.50 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.21 Total: -48.22 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.36 -7.78 -37.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087263222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.734 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds