Wall clock time and date at job start Mon Mar 30 2020 01:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 120.00053 * 2 1 4 4 N 1.34778 * 120.00324 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00461 * 179.97438 * 4 2 1 6 6 H 1.09003 * 113.34530 * 28.41961 * 5 4 2 7 7 C 1.50010 * 114.12404 * 255.49400 * 5 4 2 8 8 H 1.08995 * 112.50951 * 321.30344 * 7 5 4 9 9 C 1.51207 * 126.16042 * 104.79985 * 7 5 4 10 10 C 1.54092 * 106.29599 * 160.09442 * 9 7 5 11 11 C 1.52524 * 112.66276 * 304.75081 * 10 9 7 12 12 N 1.48409 * 111.95027 * 46.58359 * 11 10 9 13 13 C 1.36945 * 123.16613 * 128.26709 * 12 11 10 14 14 H 1.07998 * 119.99888 * 150.79641 * 13 12 11 15 15 C 1.38813 * 119.99944 * 330.79090 * 13 12 11 16 16 N 1.31615 * 119.99842 * 342.29118 * 15 13 12 17 17 Si 1.86793 * 119.99886 * 162.28553 * 15 13 12 18 18 H 1.48505 * 109.47447 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47148 * 120.00102 * 17 15 13 20 20 H 1.48500 * 109.47300 * 240.00485 * 17 15 13 21 21 C 1.45373 * 113.66309 * 308.24332 * 12 11 10 22 22 H 1.08999 * 112.08868 * 300.25017 * 21 12 11 23 23 C 1.49970 * 126.68076 * 155.98003 * 21 12 11 24 24 C 1.52996 * 114.08275 * 334.29692 * 23 21 12 25 25 C 1.52996 * 114.08731 * 106.55131 * 23 21 12 26 26 H 1.09005 * 109.46692 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46795 * 299.99371 * 1 2 3 28 28 H 1.08996 * 109.47022 * 60.00198 * 1 2 3 29 29 H 0.97008 * 120.00020 * 359.97438 * 4 2 1 30 30 H 1.08999 * 110.10327 * 279.31846 * 9 7 5 31 31 H 1.09003 * 110.10023 * 40.87085 * 9 7 5 32 32 H 1.09004 * 108.84360 * 65.44245 * 10 9 7 33 33 H 1.09002 * 108.84367 * 183.79236 * 10 9 7 34 34 H 1.09001 * 108.89376 * 285.99116 * 11 10 9 35 35 H 1.08999 * 108.95986 * 167.22781 * 11 10 9 36 36 H 0.97000 * 119.99794 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47052 * 65.43746 * 24 23 21 38 38 H 1.09000 * 109.47026 * 185.43658 * 24 23 21 39 39 H 1.09001 * 109.47372 * 305.43248 * 24 23 21 40 40 H 1.08994 * 109.47387 * 59.99399 * 25 23 21 41 41 H 1.09001 * 109.47212 * 179.97438 * 25 23 21 42 42 H 1.09006 * 109.46908 * 300.00009 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0781 -0.2871 0.4752 7 6 4.2585 -1.5099 -1.3268 8 1 3.7116 -2.2950 -1.8488 9 6 4.9074 -0.5390 -2.2874 10 6 5.8046 -1.3821 -3.2141 11 6 6.8087 -2.2339 -2.4442 12 7 6.1738 -2.9508 -1.3103 13 6 6.3021 -4.2995 -1.1105 14 1 6.2573 -4.7038 -0.1101 15 6 6.4897 -5.1468 -2.1939 16 7 6.2025 -4.7336 -3.4100 17 14 7.1499 -6.8735 -1.9257 18 1 7.3916 -7.0917 -0.4768 19 1 6.1586 -7.8643 -2.4164 20 1 8.4241 -7.0375 -2.6706 21 6 5.4033 -2.0863 -0.4315 22 1 6.0165 -1.3023 0.0129 23 6 4.2716 -2.4973 0.4626 24 6 3.5319 -3.7528 -0.0037 25 6 4.6297 -2.5263 1.9498 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6960 -2.0073 -0.0005 30 1 4.1449 -0.0239 -2.8716 31 1 5.5106 0.1843 -1.7386 32 1 5.1737 -2.0395 -3.8124 33 1 6.3468 -0.7136 -3.8828 34 1 7.5973 -1.5878 -2.0586 35 1 7.2486 -2.9637 -3.1238 36 1 6.3340 -5.3256 -4.1671 37 1 4.2034 -4.6099 0.0466 38 1 2.6706 -3.9275 0.6411 39 1 3.1946 -3.6152 -1.0310 40 1 4.9445 -1.5322 2.2672 41 1 3.7576 -2.8326 2.5276 42 1 5.4420 -3.2344 2.1143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087263222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:01 Heat of formation + Delta-G solvation = 3.283051 kcal Electronic energy + Delta-G solvation = -22105.472481 eV Core-core repulsion = 19086.629828 eV Total energy + Delta-G solvation = -3018.842654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.45438 -39.96972 -36.95713 -34.67980 -34.44766 -32.16094 -30.94126 -30.27768 -28.49289 -27.45873 -25.92938 -23.81353 -22.44595 -21.31262 -20.82566 -19.79597 -18.50617 -17.61599 -17.24866 -16.40385 -16.18335 -15.69256 -15.55019 -15.07000 -14.97652 -14.61304 -14.38801 -14.03819 -13.99685 -13.32462 -13.26920 -13.12468 -12.94037 -12.91478 -12.77585 -12.67453 -12.61155 -12.30042 -12.08180 -12.04191 -11.64894 -11.50342 -11.27695 -11.12677 -10.72995 -10.61350 -10.26037 -9.81314 -8.45314 -7.76883 -5.19346 1.46911 1.51710 1.59013 1.73548 2.39710 2.58051 3.29970 3.43126 3.48341 3.75441 3.87673 4.00752 4.15797 4.30083 4.41600 4.51445 4.54357 4.64953 4.68770 4.70710 4.74362 4.78335 4.90909 4.99077 5.06986 5.10366 5.12468 5.16366 5.20101 5.29096 5.36673 5.40332 5.58555 5.61187 5.63698 5.73051 5.79834 5.88615 6.49087 6.71606 7.17880 7.37216 7.90117 8.56187 9.28865 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.006612 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.513882 B = 4233.745902 C = 4685.143759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.604 6.604 4 N -0.704 5.704 5 C 0.157 3.843 6 H 0.100 0.900 7 C -0.158 4.158 8 H 0.078 0.922 9 C -0.084 4.084 10 C -0.110 4.110 11 C 0.155 3.845 12 N -0.582 5.582 13 C -0.225 4.225 14 H 0.066 0.934 15 C -0.047 4.047 16 N -0.923 5.923 17 Si 0.950 3.050 18 H -0.269 1.269 19 H -0.295 1.295 20 H -0.298 1.298 21 C 0.129 3.871 22 H 0.050 0.950 23 C -0.057 4.057 24 C -0.113 4.113 25 C -0.128 4.128 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.412 0.588 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.001 0.999 35 H 0.067 0.933 36 H 0.245 0.755 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.258 5.009 7.737 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.290 3.710 3 O -0.486 6.486 4 N -0.355 5.355 5 C 0.051 3.949 6 H 0.117 0.883 7 C -0.179 4.179 8 H 0.096 0.904 9 C -0.122 4.122 10 C -0.149 4.149 11 C 0.030 3.970 12 N -0.303 5.303 13 C -0.355 4.355 14 H 0.083 0.917 15 C -0.243 4.243 16 N -0.570 5.570 17 Si 0.780 3.220 18 H -0.194 1.194 19 H -0.223 1.223 20 H -0.226 1.226 21 C 0.021 3.979 22 H 0.067 0.933 23 C -0.059 4.059 24 C -0.170 4.170 25 C -0.185 4.185 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.116 0.884 29 H 0.249 0.751 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.019 0.981 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.796 5.585 7.616 13.608 hybrid contribution 0.628 -1.342 -0.636 1.613 sum -9.168 4.243 6.981 12.279 Atomic orbital electron populations 1.21870 0.88210 1.06188 1.05881 1.21665 0.92321 0.82893 0.74111 1.90677 1.72203 1.33147 1.52553 1.46111 1.06658 1.09167 1.73575 1.21825 0.79914 0.97379 0.95814 0.88257 1.23265 0.99616 0.99483 0.95564 0.90413 1.21056 0.97376 0.96566 0.97157 1.21644 0.98281 0.97188 0.97787 1.20831 0.92611 0.93458 0.90059 1.43923 1.56946 1.03062 1.26408 1.19152 1.42216 0.82474 0.91694 0.91659 1.25548 1.02640 1.00285 0.95802 1.70108 1.51797 1.36534 0.98543 0.85456 0.77317 0.81551 0.77633 1.19369 1.22285 1.22591 1.21755 0.89769 0.93083 0.93332 0.93264 1.21513 0.94808 0.94225 0.95328 1.21485 0.99517 0.96045 0.99921 1.21675 1.01714 1.01681 0.93415 0.87953 0.87622 0.88357 0.75053 0.93569 0.92700 0.94443 0.92370 0.98091 0.91517 0.94613 0.92496 0.90737 0.93753 0.92418 0.90835 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.39 71.24 0.74 -1.72 16 2 C 0.50 13.27 7.94 87.66 0.70 13.96 16 3 O -0.60 -21.97 16.78 -3.02 -0.05 -22.02 16 4 N -0.70 -18.04 5.33 -467.34 -2.49 -20.53 16 5 C 0.16 4.96 3.30 39.92 0.13 5.09 16 6 H 0.10 3.40 7.44 -2.39 -0.02 3.39 16 7 C -0.16 -5.96 2.96 -14.16 -0.04 -6.00 16 8 H 0.08 3.33 5.85 -2.39 -0.01 3.31 16 9 C -0.08 -3.22 6.11 30.38 0.19 -3.04 16 10 C -0.11 -4.69 5.91 30.81 0.18 -4.50 16 11 C 0.16 7.44 5.76 85.85 0.49 7.94 16 12 N -0.58 -27.86 2.91 -701.28 -2.04 -29.90 16 13 C -0.23 -11.59 7.77 84.03 0.65 -10.94 16 14 H 0.07 3.32 7.28 -2.91 -0.02 3.30 16 15 C -0.05 -2.52 5.06 84.86 0.43 -2.09 16 16 N -0.92 -52.15 11.19 21.65 0.24 -51.91 16 17 Si 0.95 43.66 29.59 68.60 2.03 45.69 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 20 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 21 C 0.13 5.13 3.02 40.90 0.12 5.25 16 22 H 0.05 2.00 7.95 -2.39 -0.02 1.98 16 23 C -0.06 -1.85 1.35 -55.76 -0.08 -1.93 16 24 C -0.11 -3.67 7.35 71.98 0.53 -3.14 16 25 C -0.13 -3.51 9.26 71.98 0.67 -2.84 16 26 H 0.10 0.98 7.91 -2.38 -0.02 0.96 16 27 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.41 8.40 7.32 -92.70 -0.68 7.72 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 2.04 8.06 -2.39 -0.02 2.02 16 32 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.07 3.63 5.69 -2.39 -0.01 3.62 16 36 H 0.24 13.60 8.31 -92.71 -0.77 12.83 16 37 H 0.06 2.19 6.10 -2.39 -0.01 2.17 16 38 H 0.07 1.81 7.92 -2.39 -0.02 1.79 16 39 H 0.04 1.62 5.91 -2.39 -0.01 1.60 16 40 H 0.06 1.50 7.99 -2.39 -0.02 1.48 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -65.00 322.15 2.73 -62.27 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.33 Total: 20.37 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 4.71 Total: -3.97 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -4.29 Total: -102.34 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.05 Total: -22.02 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -65.00 2.73 -62.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087263222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.555 kcal (2) G-P(sol) polarization free energy of solvation -65.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds