Wall clock time and date at job start Mon Mar 30 2020 00:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46902 * 109.46666 * 2 1 4 4 C 1.47474 * 111.00271 * 265.97157 * 3 2 1 5 5 C 1.53511 * 87.93441 * 221.30289 * 4 3 2 6 6 C 1.47486 * 110.99695 * 170.00221 * 3 2 1 7 7 H 1.08999 * 113.47621 * 23.93774 * 6 3 2 8 8 C 1.50694 * 113.47623 * 253.47271 * 6 3 2 9 9 O 1.21284 * 120.00366 * 359.97438 * 8 6 3 10 10 N 1.34780 * 120.00224 * 179.97438 * 8 6 3 11 11 C 1.46927 * 120.62497 * 0.02562 * 10 8 6 12 12 C 1.53188 * 108.77484 * 126.36699 * 11 10 8 13 13 C 1.53040 * 109.31412 * 54.63068 * 12 11 10 14 14 C 1.53037 * 109.54044 * 298.63505 * 13 12 11 15 15 H 1.09002 * 109.49408 * 301.38412 * 14 13 12 16 16 C 1.50692 * 109.50013 * 181.31880 * 14 13 12 17 17 H 1.08005 * 120.00124 * 239.99915 * 16 14 13 18 18 C 1.37881 * 120.00423 * 59.99628 * 16 14 13 19 19 N 1.31515 * 119.99388 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00344 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46746 * 90.00117 * 20 18 16 22 22 H 1.48490 * 109.47174 * 210.00354 * 20 18 16 23 23 H 1.48504 * 109.47047 * 330.00526 * 20 18 16 24 24 C 1.46924 * 120.63248 * 179.71809 * 10 8 6 25 25 H 1.08997 * 109.47069 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46592 * 299.99418 * 1 2 3 27 27 H 1.08999 * 109.47355 * 59.99973 * 1 2 3 28 28 H 1.08998 * 109.46592 * 240.00582 * 2 1 3 29 29 H 1.08997 * 109.47468 * 120.00562 * 2 1 3 30 30 H 1.09008 * 113.47654 * 336.07031 * 4 3 2 31 31 H 1.09003 * 113.47610 * 106.47225 * 4 3 2 32 32 H 1.09007 * 114.16470 * 272.37709 * 5 4 3 33 33 H 1.08997 * 114.17319 * 139.67354 * 5 4 3 34 34 H 1.09002 * 109.58237 * 246.15219 * 11 10 8 35 35 H 1.08995 * 109.58979 * 6.43311 * 11 10 8 36 36 H 1.08998 * 109.49824 * 174.58095 * 12 11 10 37 37 H 1.09002 * 109.49840 * 294.64657 * 12 11 10 38 38 H 1.09002 * 109.45870 * 58.65793 * 13 12 11 39 39 H 1.08999 * 109.45974 * 178.62657 * 13 12 11 40 40 H 0.96999 * 119.99393 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.58767 * 353.42129 * 24 10 8 42 42 H 1.08994 * 109.58304 * 113.84722 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.2870 1.8512 -1.3734 5 6 3.5605 2.5211 -0.8387 6 6 3.4743 1.4314 0.2390 7 1 3.9886 0.5098 -0.0332 8 6 3.8409 1.9193 1.6169 9 8 2.9702 2.2278 2.4027 10 7 5.1367 2.0129 1.9760 11 6 6.2027 1.6434 1.0349 12 6 7.1824 2.8149 0.9150 13 6 7.6810 3.2025 2.3090 14 6 6.4973 3.6489 3.1702 15 1 5.9988 4.4931 2.6937 16 6 6.9933 4.0611 4.5322 17 1 6.6384 3.5484 5.4140 18 6 7.9001 5.0927 4.6526 19 7 8.3319 5.7173 3.5788 20 14 8.5144 5.6041 6.3410 21 1 9.7318 4.8249 6.6817 22 1 8.8404 7.0527 6.3313 23 1 7.4592 5.3409 7.3523 24 6 5.5100 2.4926 3.3136 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5139 0.8899 30 1 2.4845 1.0415 -2.0760 31 1 1.5454 2.5590 -1.7437 32 1 3.4083 3.5331 -0.4633 33 1 4.4236 2.4295 -1.4980 34 1 6.7287 0.7636 1.4058 35 1 5.7693 1.4254 0.0589 36 1 8.0289 2.5193 0.2951 37 1 6.6773 3.6664 0.4590 38 1 8.1645 2.3431 2.7737 39 1 8.3970 4.0200 2.2243 40 1 8.9701 6.4428 3.6635 41 1 4.6199 2.8373 3.8398 42 1 5.9782 1.6837 3.8743 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147060316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:52 Heat of formation + Delta-G solvation = -4.107369 kcal Electronic energy + Delta-G solvation = -21185.022016 eV Core-core repulsion = 18165.858889 eV Total energy + Delta-G solvation = -3019.163126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78656 -38.64331 -36.50776 -33.52095 -32.80726 -31.28452 -30.30997 -27.36667 -27.14914 -25.03653 -24.13682 -22.18386 -21.69781 -20.76572 -19.54364 -18.19420 -17.16328 -16.27803 -16.15242 -15.51823 -15.11316 -14.64236 -14.23396 -13.90902 -13.51411 -13.43216 -13.18427 -12.74094 -12.68868 -12.41382 -12.30439 -12.02468 -11.98412 -11.56545 -11.26602 -11.01317 -10.96830 -10.83599 -10.74814 -10.70132 -10.29005 -9.95212 -9.78129 -9.43936 -9.30069 -8.89020 -8.70123 -8.37278 -7.84676 -6.01092 -4.07968 3.06568 3.30318 3.35959 3.37979 3.43315 4.03737 4.32929 4.43734 4.69256 4.82207 4.93555 5.00233 5.16107 5.23187 5.27620 5.35043 5.40299 5.51852 5.62817 5.64693 5.71622 5.79151 5.79211 5.99567 6.06843 6.15476 6.25659 6.34207 6.43199 6.50450 6.68276 6.83670 6.93933 7.03184 7.18998 7.35098 7.70168 7.93727 8.06693 8.09017 8.39271 8.75868 8.95970 9.56876 11.04447 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035371 B = 0.004523 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.417548 B = 6188.544301 C = 6562.167253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.015 3.985 3 N -0.443 5.443 4 C -0.003 4.003 5 C -0.128 4.128 6 C 0.007 3.993 7 H 0.094 0.906 8 C 0.520 3.480 9 O -0.531 6.531 10 N -0.604 5.604 11 C 0.111 3.889 12 C -0.134 4.134 13 C -0.112 4.112 14 C 0.039 3.961 15 H 0.029 0.971 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.119 3.881 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.035 0.965 39 H 0.095 0.905 40 H 0.260 0.740 41 H 0.078 0.922 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 -10.504 -12.158 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 N -0.165 5.165 4 C -0.132 4.132 5 C -0.166 4.166 6 C -0.106 4.106 7 H 0.112 0.888 8 C 0.306 3.694 9 O -0.406 6.406 10 N -0.337 5.337 11 C -0.013 4.013 12 C -0.172 4.172 13 C -0.150 4.150 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.002 4.002 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.705 -9.874 -11.320 16.882 hybrid contribution 1.066 -0.333 0.319 1.161 sum -6.639 -10.207 -11.000 16.410 Atomic orbital electron populations 1.21623 0.94356 1.01094 1.02666 1.22671 0.97417 0.90319 1.00961 1.68851 1.12132 1.19714 1.15840 1.23870 0.97865 0.99821 0.91675 1.23135 0.98164 0.99148 0.96122 1.23417 0.92049 1.00072 0.95080 0.88788 1.20030 0.82496 0.78830 0.88035 1.90666 1.48037 1.49324 1.52623 1.48282 1.04715 1.64645 1.16080 1.21715 0.89416 0.98124 0.92006 1.21994 0.97483 0.97034 1.00709 1.21624 1.01152 1.00920 0.91307 1.18884 0.91240 0.91944 0.95892 0.95290 1.21084 1.25128 1.16850 0.92155 0.92503 1.24931 0.96249 0.95997 0.96611 1.69873 1.32035 1.23102 1.27788 0.86581 0.79114 0.77687 0.84566 1.20714 1.21243 1.19844 1.21871 0.99903 0.97704 0.80747 0.92612 0.91638 0.92866 0.93912 0.90963 0.91228 0.89295 0.88145 0.89756 0.92139 0.91457 0.92564 0.92314 0.94641 0.88636 0.93006 0.90361 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.01 0.17 5.54 -3.82 -0.02 0.15 16 3 N -0.44 -6.08 5.76 -237.93 -1.37 -7.45 16 4 C 0.00 -0.04 7.71 -7.55 -0.06 -0.09 16 5 C -0.13 -1.50 7.54 -26.20 -0.20 -1.70 16 6 C 0.01 0.09 2.06 -72.59 -0.15 -0.06 16 7 H 0.09 1.08 7.26 -51.93 -0.38 0.71 16 8 C 0.52 9.75 7.27 -10.99 -0.08 9.67 16 9 O -0.53 -12.18 16.08 5.55 0.09 -12.09 16 10 N -0.60 -11.30 2.98 -173.06 -0.52 -11.81 16 11 C 0.11 1.69 6.31 -3.71 -0.02 1.66 16 12 C -0.13 -2.33 6.08 -26.61 -0.16 -2.49 16 13 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 14 C 0.04 0.98 2.24 -91.90 -0.21 0.77 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 16 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 17 H 0.06 1.54 7.75 -52.48 -0.41 1.13 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -24.94 11.31 55.43 0.63 -24.31 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.12 2.61 5.63 -3.95 -0.02 2.59 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.40 7.30 -51.93 -0.38 0.02 16 29 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.07 0.58 7.42 -51.92 -0.39 0.19 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 33 H 0.08 0.80 7.94 -51.93 -0.41 0.38 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.81 5.41 -51.93 -0.28 0.53 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.08 1.87 7.01 -51.93 -0.36 1.51 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -31.02 328.46 -9.42 -40.44 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.12 Total: -0.06 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.06 Total: -5.81 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -1.26 Total: -43.58 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.02 -9.42 -40.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147060316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.336 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds