Wall clock time and date at job start Mon Mar 30 2020 00:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46902 * 109.46666 * 2 1 4 4 C 1.47474 * 111.00271 * 265.97157 * 3 2 1 5 5 C 1.53511 * 87.93441 * 221.30289 * 4 3 2 6 6 C 1.47486 * 110.99695 * 170.00221 * 3 2 1 7 7 H 1.08999 * 113.47621 * 23.93774 * 6 3 2 8 8 C 1.50694 * 113.47623 * 253.47271 * 6 3 2 9 9 O 1.21284 * 120.00366 * 359.97438 * 8 6 3 10 10 N 1.34780 * 120.00224 * 179.97438 * 8 6 3 11 11 C 1.46927 * 120.62497 * 0.02562 * 10 8 6 12 12 C 1.53188 * 108.77484 * 126.36699 * 11 10 8 13 13 C 1.53040 * 109.31412 * 54.63068 * 12 11 10 14 14 C 1.53037 * 109.54044 * 298.63505 * 13 12 11 15 15 H 1.09002 * 109.49408 * 301.38412 * 14 13 12 16 16 C 1.50692 * 109.50013 * 181.31880 * 14 13 12 17 17 H 1.08005 * 120.00124 * 239.99915 * 16 14 13 18 18 C 1.37881 * 120.00423 * 59.99628 * 16 14 13 19 19 N 1.31515 * 119.99388 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00344 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46746 * 90.00117 * 20 18 16 22 22 H 1.48490 * 109.47174 * 210.00354 * 20 18 16 23 23 H 1.48504 * 109.47047 * 330.00526 * 20 18 16 24 24 C 1.46924 * 120.63248 * 179.71809 * 10 8 6 25 25 H 1.08997 * 109.47069 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46592 * 299.99418 * 1 2 3 27 27 H 1.08999 * 109.47355 * 59.99973 * 1 2 3 28 28 H 1.08998 * 109.46592 * 240.00582 * 2 1 3 29 29 H 1.08997 * 109.47468 * 120.00562 * 2 1 3 30 30 H 1.09008 * 113.47654 * 336.07031 * 4 3 2 31 31 H 1.09003 * 113.47610 * 106.47225 * 4 3 2 32 32 H 1.09007 * 114.16470 * 272.37709 * 5 4 3 33 33 H 1.08997 * 114.17319 * 139.67354 * 5 4 3 34 34 H 1.09002 * 109.58237 * 246.15219 * 11 10 8 35 35 H 1.08995 * 109.58979 * 6.43311 * 11 10 8 36 36 H 1.08998 * 109.49824 * 174.58095 * 12 11 10 37 37 H 1.09002 * 109.49840 * 294.64657 * 12 11 10 38 38 H 1.09002 * 109.45870 * 58.65793 * 13 12 11 39 39 H 1.08999 * 109.45974 * 178.62657 * 13 12 11 40 40 H 0.96999 * 119.99393 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.58767 * 353.42129 * 24 10 8 42 42 H 1.08994 * 109.58304 * 113.84722 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.2870 1.8512 -1.3734 5 6 3.5605 2.5211 -0.8387 6 6 3.4743 1.4314 0.2390 7 1 3.9886 0.5098 -0.0332 8 6 3.8409 1.9193 1.6169 9 8 2.9702 2.2278 2.4027 10 7 5.1367 2.0129 1.9760 11 6 6.2027 1.6434 1.0349 12 6 7.1824 2.8149 0.9150 13 6 7.6810 3.2025 2.3090 14 6 6.4973 3.6489 3.1702 15 1 5.9988 4.4931 2.6937 16 6 6.9933 4.0611 4.5322 17 1 6.6384 3.5484 5.4140 18 6 7.9001 5.0927 4.6526 19 7 8.3319 5.7173 3.5788 20 14 8.5144 5.6041 6.3410 21 1 9.7318 4.8249 6.6817 22 1 8.8404 7.0527 6.3313 23 1 7.4592 5.3409 7.3523 24 6 5.5100 2.4926 3.3136 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5139 0.8899 30 1 2.4845 1.0415 -2.0760 31 1 1.5454 2.5590 -1.7437 32 1 3.4083 3.5331 -0.4633 33 1 4.4236 2.4295 -1.4980 34 1 6.7287 0.7636 1.4058 35 1 5.7693 1.4254 0.0589 36 1 8.0289 2.5193 0.2951 37 1 6.6773 3.6664 0.4590 38 1 8.1645 2.3431 2.7737 39 1 8.3970 4.0200 2.2243 40 1 8.9701 6.4428 3.6635 41 1 4.6199 2.8373 3.8398 42 1 5.9782 1.6837 3.8743 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147060316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:52 Heat of formation + Delta-G solvation = -25.584755 kcal Electronic energy + Delta-G solvation = -21185.953345 eV Core-core repulsion = 18165.858889 eV Total energy + Delta-G solvation = -3020.094456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.91730 -40.01300 -38.13582 -35.37093 -33.75048 -32.97089 -32.03659 -28.44489 -28.24190 -26.88294 -25.63622 -23.34023 -23.04188 -22.04038 -20.94542 -19.61548 -18.68532 -18.06332 -17.28277 -16.80142 -16.59703 -16.15660 -15.64630 -15.26008 -15.07400 -14.66396 -14.57777 -14.32659 -13.88837 -13.68776 -13.58257 -13.43937 -13.09872 -12.86434 -12.70572 -12.64832 -12.46738 -12.21725 -11.92317 -11.85162 -11.84328 -11.61176 -11.57449 -11.23892 -10.84674 -10.61633 -10.42387 -9.75729 -9.46261 -8.11110 -6.26332 1.40012 1.41450 1.51535 1.66592 2.04156 2.43210 3.03170 3.15177 3.38229 3.63348 3.86281 3.97317 4.12207 4.14764 4.27927 4.33782 4.38205 4.42459 4.54867 4.60001 4.61741 4.75298 4.79461 4.85505 4.88615 4.91192 4.97546 5.01690 5.11646 5.14489 5.25948 5.32209 5.41378 5.51374 5.59366 5.61613 5.93812 6.10281 6.15473 6.34908 6.61745 6.83012 7.30397 7.41752 8.92484 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035371 B = 0.004523 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.417548 B = 6188.544301 C = 6562.167253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.014 3.986 3 N -0.484 5.484 4 C 0.009 3.991 5 C -0.125 4.125 6 C 0.013 3.987 7 H 0.131 0.869 8 C 0.511 3.489 9 O -0.586 6.586 10 N -0.607 5.607 11 C 0.111 3.889 12 C -0.126 4.126 13 C -0.105 4.105 14 C 0.042 3.958 15 H -0.016 1.016 16 C -0.540 4.540 17 H 0.050 0.950 18 C 0.018 3.982 19 N -0.912 5.912 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.131 3.869 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.262 0.738 41 H 0.046 0.954 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 -12.546 -14.539 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 N -0.208 5.208 4 C -0.119 4.119 5 C -0.163 4.163 6 C -0.100 4.100 7 H 0.148 0.852 8 C 0.299 3.701 9 O -0.466 6.466 10 N -0.339 5.339 11 C -0.011 4.011 12 C -0.164 4.164 13 C -0.144 4.144 14 C 0.023 3.977 15 H 0.002 0.998 16 C -0.579 4.579 17 H 0.068 0.932 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.780 3.220 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.008 3.992 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.059 -11.934 -13.736 19.517 hybrid contribution 0.828 0.342 1.081 1.404 sum -6.231 -11.592 -12.655 18.258 Atomic orbital electron populations 1.21605 0.94036 1.02092 1.01703 1.22727 0.97734 0.89368 1.01588 1.68824 1.12127 1.21483 1.18356 1.23914 0.96866 1.00475 0.90618 1.23142 1.00509 0.96974 0.95707 1.23524 0.92946 1.01994 0.91535 0.85180 1.21126 0.81621 0.77616 0.89718 1.90632 1.49526 1.51683 1.54752 1.48367 1.06057 1.64213 1.15260 1.21987 0.88184 0.97505 0.93392 1.21899 0.99167 0.97696 0.97635 1.21417 0.99177 0.99674 0.94102 1.18779 0.92500 0.91408 0.95047 0.99761 1.21442 1.25641 1.17591 0.93221 0.93213 1.25671 0.96335 0.95928 1.00146 1.70005 1.32261 1.23285 1.29518 0.85610 0.78714 0.77431 0.80228 1.19514 1.20812 1.19879 1.21409 0.97738 0.96943 0.83087 0.90639 0.94358 0.92030 0.90772 0.92619 0.87713 0.89135 0.91230 0.86364 0.90116 0.86936 0.88975 0.93512 0.94468 0.91896 0.92896 0.93570 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.24 71.98 0.74 -1.85 16 2 C 0.01 0.28 5.54 86.31 0.48 0.76 16 3 N -0.48 -12.35 5.76 -906.69 -5.22 -17.57 16 4 C 0.01 0.16 7.71 83.57 0.64 0.80 16 5 C -0.13 -2.58 7.54 30.94 0.23 -2.34 16 6 C 0.01 0.31 2.06 41.43 0.09 0.40 16 7 H 0.13 2.31 7.26 -2.39 -0.02 2.29 16 8 C 0.51 19.10 7.27 87.65 0.64 19.73 16 9 O -0.59 -28.14 16.08 -3.04 -0.05 -28.19 16 10 N -0.61 -22.43 2.98 -819.83 -2.44 -24.87 16 11 C 0.11 3.02 6.31 86.36 0.54 3.56 16 12 C -0.13 -4.12 6.08 30.67 0.19 -3.93 16 13 C -0.11 -4.73 4.96 30.62 0.15 -4.58 16 14 C 0.04 2.16 2.24 -11.62 -0.03 2.13 16 15 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 16 C -0.54 -30.61 8.56 25.60 0.22 -30.39 16 17 H 0.05 2.80 7.75 -2.91 -0.02 2.78 16 18 C 0.02 1.03 5.30 84.66 0.45 1.48 16 19 N -0.91 -52.50 11.31 21.45 0.24 -52.26 16 20 Si 0.95 44.16 29.54 68.60 2.03 46.19 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 24 C 0.13 6.00 5.63 86.21 0.48 6.48 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.03 7.30 -2.39 -0.02 1.01 16 29 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 30 H 0.10 1.10 7.42 -2.38 -0.02 1.09 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.88 8.11 -2.38 -0.02 1.86 16 33 H 0.12 1.62 7.94 -2.39 -0.02 1.60 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.11 2.10 5.41 -2.39 -0.01 2.09 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 3.24 6.04 -2.39 -0.01 3.23 16 40 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.05 2.37 7.01 -2.39 -0.02 2.35 16 42 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -73.26 328.46 0.36 -72.90 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.98 Total: 11.56 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.83 Total: -7.75 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -7.42 Total: -94.70 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.19 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.26 0.36 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147060316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.313 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds