Wall clock time and date at job start Mon Mar 30 2020 00:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47118 * 2 1 4 4 C 1.47473 * 111.00034 * 265.96945 * 3 2 1 5 5 C 1.53516 * 87.93351 * 221.29775 * 4 3 2 6 6 C 1.47482 * 110.99699 * 169.99629 * 3 2 1 7 7 H 1.08997 * 113.47512 * 23.88421 * 6 3 2 8 8 C 1.50695 * 113.48091 * 253.47019 * 6 3 2 9 9 O 1.21284 * 119.99979 * 0.02562 * 8 6 3 10 10 N 1.34768 * 120.00196 * 180.02562 * 8 6 3 11 11 C 1.46927 * 120.63212 * 0.02562 * 10 8 6 12 12 C 1.53199 * 108.77410 * 233.60853 * 11 10 8 13 13 C 1.53037 * 109.31163 * 305.36297 * 12 11 10 14 14 C 1.53036 * 109.54188 * 61.36530 * 13 12 11 15 15 H 1.09004 * 109.49558 * 58.61614 * 14 13 12 16 16 C 1.50701 * 109.50290 * 178.68141 * 14 13 12 17 17 H 1.08002 * 119.99761 * 119.93028 * 16 14 13 18 18 C 1.37871 * 119.99694 * 300.21591 * 16 14 13 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 14 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 14 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.46939 * 120.60565 * 180.02562 * 10 8 6 25 25 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46822 * 300.00164 * 1 2 3 27 27 H 1.08999 * 109.46863 * 59.99869 * 1 2 3 28 28 H 1.09000 * 109.46822 * 239.99836 * 2 1 3 29 29 H 1.08999 * 109.46863 * 120.00131 * 2 1 3 30 30 H 1.09002 * 113.47567 * 336.06644 * 4 3 2 31 31 H 1.08997 * 113.47402 * 106.52957 * 4 3 2 32 32 H 1.08995 * 114.16933 * 272.37584 * 5 4 3 33 33 H 1.09001 * 114.16661 * 139.67212 * 5 4 3 34 34 H 1.08997 * 109.58974 * 113.82452 * 11 10 8 35 35 H 1.08999 * 109.58434 * 353.39259 * 11 10 8 36 36 H 1.08996 * 109.49564 * 185.40754 * 12 11 10 37 37 H 1.08999 * 109.49762 * 65.31707 * 12 11 10 38 38 H 1.09002 * 109.45939 * 301.33930 * 13 12 11 39 39 H 1.09002 * 109.46176 * 181.38516 * 13 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.61657 * 6.62415 * 24 10 8 42 42 H 1.09003 * 109.56330 * 246.19303 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2871 1.8510 -1.3734 5 6 3.5606 2.5211 -0.8386 6 6 3.4743 1.4313 0.2392 7 1 3.9884 0.5093 -0.0321 8 6 3.8410 1.9192 1.6170 9 8 2.9701 2.2270 2.4030 10 7 5.1366 2.0136 1.9757 11 6 6.2028 1.6451 1.0344 12 6 7.1226 0.6214 1.7075 13 6 7.6260 1.1899 3.0362 14 6 6.4374 1.4541 3.9631 15 1 5.8904 0.5256 4.1270 16 6 6.9364 1.9835 5.2829 17 1 6.6230 2.9580 5.6271 18 6 7.7978 1.2262 6.0480 19 7 8.1794 0.0395 5.6289 20 14 8.4226 1.8856 7.6802 21 1 7.8490 3.2339 7.9215 22 1 8.0116 0.9694 8.7743 23 1 9.9042 1.9780 7.6424 24 6 5.5092 2.4872 3.3159 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4846 1.0414 -2.0759 31 1 1.5462 2.5597 -1.7434 32 1 3.4086 3.5330 -0.4633 33 1 4.4237 2.4293 -1.4980 34 1 6.7771 2.5321 0.7672 35 1 5.7636 1.2077 0.1378 36 1 7.9713 0.4116 1.0566 37 1 6.5689 -0.2992 1.8921 38 1 8.1585 2.1233 2.8533 39 1 8.3003 0.4735 3.5055 40 1 8.7857 -0.4931 6.1670 41 1 4.6127 2.6052 3.9246 42 1 6.0265 3.4432 3.2344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147060318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:58 Heat of formation + Delta-G solvation = -4.088309 kcal Electronic energy + Delta-G solvation = -21160.390232 eV Core-core repulsion = 18141.227932 eV Total energy + Delta-G solvation = -3019.162300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79043 -38.64666 -36.50003 -33.52157 -32.79545 -31.28728 -30.29864 -27.37376 -27.15836 -25.04277 -24.13877 -22.17643 -21.68707 -20.85543 -19.40836 -18.33684 -17.11514 -16.34845 -16.12965 -15.48419 -15.09454 -14.70814 -14.22360 -13.88791 -13.58212 -13.44860 -12.94413 -12.79777 -12.70028 -12.57156 -12.26361 -12.02676 -11.98769 -11.58106 -11.28804 -11.00940 -10.99435 -10.83843 -10.74276 -10.69186 -10.29630 -9.95975 -9.77943 -9.45643 -9.30337 -8.89034 -8.69726 -8.38461 -7.84837 -6.01906 -4.08807 3.04371 3.29021 3.36994 3.39819 3.44148 4.02189 4.28622 4.43251 4.67428 4.83908 4.92896 5.01366 5.14586 5.25023 5.27482 5.36724 5.41797 5.50378 5.60738 5.63762 5.68099 5.78399 5.81635 5.93236 6.08010 6.16452 6.27137 6.33400 6.42515 6.49053 6.67621 6.81939 6.93728 7.01739 7.18262 7.34263 7.69518 7.92650 8.06315 8.08140 8.38509 8.75835 8.95446 9.56215 11.03648 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.004541 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.563395 B = 6164.663102 C = 6432.934242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.014 3.986 3 N -0.443 5.443 4 C -0.003 4.003 5 C -0.128 4.128 6 C 0.006 3.994 7 H 0.097 0.903 8 C 0.520 3.480 9 O -0.531 6.531 10 N -0.604 5.604 11 C 0.112 3.888 12 C -0.136 4.136 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.513 4.513 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.118 3.882 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.259 0.741 41 H 0.078 0.922 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 0.372 -16.071 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 N -0.166 5.166 4 C -0.132 4.132 5 C -0.166 4.166 6 C -0.107 4.107 7 H 0.114 0.886 8 C 0.306 3.694 9 O -0.407 6.407 10 N -0.337 5.337 11 C -0.012 4.012 12 C -0.174 4.174 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.551 4.551 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.003 4.003 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.412 0.718 -15.130 16.863 hybrid contribution 1.062 -0.456 0.354 1.209 sum -6.350 0.263 -14.776 16.085 Atomic orbital electron populations 1.21619 0.94345 1.01170 1.02557 1.22681 0.97406 0.90188 1.01178 1.68836 1.12138 1.19952 1.15643 1.23860 0.97690 0.99833 0.91849 1.23124 0.98289 0.98954 0.96263 1.23429 0.92126 1.00119 0.94989 0.88558 1.20016 0.82497 0.78820 0.88070 1.90666 1.48012 1.49442 1.52549 1.48280 1.04752 1.64823 1.15850 1.21716 0.89507 0.98571 0.91383 1.22013 0.97960 0.98050 0.99354 1.21623 1.00801 1.00420 0.92165 1.18979 0.91655 0.94108 0.93187 0.95360 1.21129 1.27557 1.03260 1.03177 0.92404 1.24933 0.96181 0.94793 0.97915 1.69880 1.34475 1.10633 1.37875 0.86526 0.78467 0.79135 0.83829 1.19703 1.21030 1.21054 1.21984 0.99872 0.97909 0.80495 0.92544 0.91650 0.92942 0.93854 0.90751 0.91181 0.89359 0.88387 0.89849 0.91921 0.91509 0.92509 0.92505 0.94560 0.88645 0.93059 0.90353 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.01 0.17 5.54 -3.82 -0.02 0.15 16 3 N -0.44 -6.08 5.76 -237.92 -1.37 -7.46 16 4 C 0.00 -0.03 7.71 -7.55 -0.06 -0.09 16 5 C -0.13 -1.38 7.78 -26.20 -0.20 -1.58 16 6 C 0.01 0.09 2.08 -72.58 -0.15 -0.07 16 7 H 0.10 1.18 7.00 -51.93 -0.36 0.82 16 8 C 0.52 9.75 7.27 -10.99 -0.08 9.67 16 9 O -0.53 -12.18 16.07 5.55 0.09 -12.09 16 10 N -0.60 -11.29 2.97 -172.74 -0.51 -11.80 16 11 C 0.11 1.70 6.32 -3.71 -0.02 1.67 16 12 C -0.14 -2.37 6.08 -26.61 -0.16 -2.53 16 13 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 14 C 0.04 0.98 2.25 -91.64 -0.21 0.78 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.51 -13.96 8.57 -34.44 -0.30 -14.25 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.00 11.31 55.43 0.63 -24.37 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.12 2.60 5.66 -3.69 -0.02 2.58 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.43 7.30 -51.93 -0.38 0.05 16 29 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 30 H 0.07 0.57 7.42 -51.93 -0.39 0.18 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.17 8.11 -51.93 -0.42 0.74 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.81 5.66 -51.93 -0.29 0.51 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 2.42 6.03 -51.93 -0.31 2.10 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 1.87 7.01 -51.93 -0.36 1.51 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -31.11 328.94 -9.43 -40.54 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.13 Total: -0.13 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.07 Total: -5.79 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -1.26 Total: -43.63 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.11 -9.43 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147060318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.451 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds