Wall clock time and date at job start Mon Mar 30 2020 00:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47118 * 2 1 4 4 C 1.47473 * 111.00034 * 265.96945 * 3 2 1 5 5 C 1.53516 * 87.93351 * 221.29775 * 4 3 2 6 6 C 1.47482 * 110.99699 * 169.99629 * 3 2 1 7 7 H 1.08997 * 113.47512 * 23.88421 * 6 3 2 8 8 C 1.50695 * 113.48091 * 253.47019 * 6 3 2 9 9 O 1.21284 * 119.99979 * 0.02562 * 8 6 3 10 10 N 1.34768 * 120.00196 * 180.02562 * 8 6 3 11 11 C 1.46927 * 120.63212 * 0.02562 * 10 8 6 12 12 C 1.53199 * 108.77410 * 233.60853 * 11 10 8 13 13 C 1.53037 * 109.31163 * 305.36297 * 12 11 10 14 14 C 1.53036 * 109.54188 * 61.36530 * 13 12 11 15 15 H 1.09004 * 109.49558 * 58.61614 * 14 13 12 16 16 C 1.50701 * 109.50290 * 178.68141 * 14 13 12 17 17 H 1.08002 * 119.99761 * 119.93028 * 16 14 13 18 18 C 1.37871 * 119.99694 * 300.21591 * 16 14 13 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 14 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 14 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.46939 * 120.60565 * 180.02562 * 10 8 6 25 25 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46822 * 300.00164 * 1 2 3 27 27 H 1.08999 * 109.46863 * 59.99869 * 1 2 3 28 28 H 1.09000 * 109.46822 * 239.99836 * 2 1 3 29 29 H 1.08999 * 109.46863 * 120.00131 * 2 1 3 30 30 H 1.09002 * 113.47567 * 336.06644 * 4 3 2 31 31 H 1.08997 * 113.47402 * 106.52957 * 4 3 2 32 32 H 1.08995 * 114.16933 * 272.37584 * 5 4 3 33 33 H 1.09001 * 114.16661 * 139.67212 * 5 4 3 34 34 H 1.08997 * 109.58974 * 113.82452 * 11 10 8 35 35 H 1.08999 * 109.58434 * 353.39259 * 11 10 8 36 36 H 1.08996 * 109.49564 * 185.40754 * 12 11 10 37 37 H 1.08999 * 109.49762 * 65.31707 * 12 11 10 38 38 H 1.09002 * 109.45939 * 301.33930 * 13 12 11 39 39 H 1.09002 * 109.46176 * 181.38516 * 13 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.61657 * 6.62415 * 24 10 8 42 42 H 1.09003 * 109.56330 * 246.19303 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2871 1.8510 -1.3734 5 6 3.5606 2.5211 -0.8386 6 6 3.4743 1.4313 0.2392 7 1 3.9884 0.5093 -0.0321 8 6 3.8410 1.9192 1.6170 9 8 2.9701 2.2270 2.4030 10 7 5.1366 2.0136 1.9757 11 6 6.2028 1.6451 1.0344 12 6 7.1226 0.6214 1.7075 13 6 7.6260 1.1899 3.0362 14 6 6.4374 1.4541 3.9631 15 1 5.8904 0.5256 4.1270 16 6 6.9364 1.9835 5.2829 17 1 6.6230 2.9580 5.6271 18 6 7.7978 1.2262 6.0480 19 7 8.1794 0.0395 5.6289 20 14 8.4226 1.8856 7.6802 21 1 7.8490 3.2339 7.9215 22 1 8.0116 0.9694 8.7743 23 1 9.9042 1.9780 7.6424 24 6 5.5092 2.4872 3.3159 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4846 1.0414 -2.0759 31 1 1.5462 2.5597 -1.7434 32 1 3.4086 3.5330 -0.4633 33 1 4.4237 2.4293 -1.4980 34 1 6.7771 2.5321 0.7672 35 1 5.7636 1.2077 0.1378 36 1 7.9713 0.4116 1.0566 37 1 6.5689 -0.2992 1.8921 38 1 8.1585 2.1233 2.8533 39 1 8.3003 0.4735 3.5055 40 1 8.7857 -0.4931 6.1670 41 1 4.6127 2.6052 3.9246 42 1 6.0265 3.4432 3.2344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147060318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:58 Heat of formation + Delta-G solvation = -25.642238 kcal Electronic energy + Delta-G solvation = -21161.324881 eV Core-core repulsion = 18141.227932 eV Total energy + Delta-G solvation = -3020.096948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90735 -40.01249 -38.12736 -35.37515 -33.76804 -32.96841 -32.03094 -28.44703 -28.23129 -26.88958 -25.62926 -23.34692 -23.05747 -22.11351 -20.77013 -19.77657 -18.64486 -18.07498 -17.29231 -16.78483 -16.61333 -16.16299 -15.65276 -15.23726 -15.08670 -14.71477 -14.58880 -14.24055 -13.87083 -13.76036 -13.56003 -13.46079 -13.11734 -12.89934 -12.72104 -12.61158 -12.46647 -12.21591 -11.93316 -11.85563 -11.84814 -11.63683 -11.57092 -11.25112 -10.84403 -10.61825 -10.44106 -9.76532 -9.46305 -8.12021 -6.27339 1.38716 1.40949 1.52394 1.65461 2.07298 2.42584 3.02780 3.14352 3.38130 3.62279 3.85835 3.95608 4.13405 4.15343 4.26450 4.33658 4.38964 4.41890 4.55623 4.58103 4.60233 4.76225 4.78690 4.84521 4.87681 4.91775 4.98178 5.00344 5.12407 5.13635 5.24409 5.30034 5.39866 5.50460 5.58504 5.60761 5.92380 6.08532 6.13805 6.33903 6.61639 6.82337 7.30514 7.41014 8.91789 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.004541 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.563395 B = 6164.663102 C = 6432.934242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.013 3.987 3 N -0.483 5.483 4 C 0.006 3.994 5 C -0.117 4.117 6 C 0.008 3.992 7 H 0.121 0.879 8 C 0.511 3.489 9 O -0.586 6.586 10 N -0.607 5.607 11 C 0.112 3.888 12 C -0.128 4.128 13 C -0.106 4.106 14 C 0.042 3.958 15 H -0.018 1.018 16 C -0.539 4.539 17 H 0.051 0.949 18 C 0.018 3.982 19 N -0.913 5.913 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.131 3.869 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.262 0.738 41 H 0.046 0.954 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 0.458 -19.163 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 N -0.206 5.206 4 C -0.121 4.121 5 C -0.155 4.155 6 C -0.105 4.105 7 H 0.138 0.862 8 C 0.299 3.701 9 O -0.466 6.466 10 N -0.339 5.339 11 C -0.009 4.009 12 C -0.166 4.166 13 C -0.144 4.144 14 C 0.023 3.977 15 H 0.001 0.999 16 C -0.577 4.577 17 H 0.069 0.931 18 C -0.181 4.181 19 N -0.552 5.552 20 Si 0.781 3.219 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.199 1.199 24 C 0.008 3.992 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.139 0.861 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.715 0.800 -18.263 19.474 hybrid contribution 0.808 -0.504 1.357 1.657 sum -5.907 0.296 -16.906 17.911 Atomic orbital electron populations 1.21592 0.93796 1.02047 1.01856 1.22718 0.97934 0.89685 1.01217 1.68819 1.12115 1.21073 1.18607 1.23928 0.97321 1.00511 0.90385 1.23155 1.00286 0.96975 0.95065 1.23540 0.92903 1.02130 0.91918 0.86179 1.21104 0.81616 0.77555 0.89795 1.90631 1.49496 1.51794 1.54702 1.48364 1.06092 1.64532 1.14904 1.21991 0.88427 0.99006 0.91513 1.21928 0.99532 0.97791 0.97375 1.21416 0.98944 0.99856 0.94161 1.18875 0.92693 0.92551 0.93609 0.99944 1.21477 1.28066 1.03287 1.04892 0.93107 1.25678 0.96286 0.95028 1.01143 1.70011 1.34738 1.11482 1.39000 0.85548 0.78254 0.78477 0.79634 1.19400 1.20884 1.19940 1.21521 0.97797 0.97458 0.82423 0.90908 0.94297 0.91611 0.90912 0.93424 0.88194 0.88723 0.90073 0.86061 0.89714 0.87012 0.88922 0.93951 0.94251 0.91957 0.92910 0.93536 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 10.24 71.98 0.74 -2.01 16 2 C 0.01 0.28 5.54 86.30 0.48 0.76 16 3 N -0.48 -12.38 5.76 -906.63 -5.22 -17.60 16 4 C 0.01 0.10 7.71 83.58 0.64 0.75 16 5 C -0.12 -2.04 7.78 30.94 0.24 -1.80 16 6 C 0.01 0.19 2.08 41.44 0.09 0.28 16 7 H 0.12 2.44 7.00 -2.39 -0.02 2.42 16 8 C 0.51 19.12 7.27 87.66 0.64 19.76 16 9 O -0.59 -28.17 16.07 -3.04 -0.05 -28.22 16 10 N -0.61 -22.42 2.97 -818.81 -2.43 -24.85 16 11 C 0.11 3.05 6.32 86.36 0.55 3.59 16 12 C -0.13 -4.24 6.08 30.67 0.19 -4.05 16 13 C -0.11 -4.75 4.96 30.62 0.15 -4.60 16 14 C 0.04 2.17 2.25 -11.45 -0.03 2.14 16 15 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 16 C -0.54 -30.50 8.57 25.60 0.22 -30.28 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 18 C 0.02 0.99 5.30 84.65 0.45 1.44 16 19 N -0.91 -52.71 11.31 21.45 0.24 -52.47 16 20 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 C 0.13 5.97 5.66 86.37 0.49 6.46 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.17 7.30 -2.39 -0.02 1.15 16 29 H 0.05 1.29 8.08 -2.39 -0.02 1.27 16 30 H 0.10 1.04 7.42 -2.39 -0.02 1.02 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.11 2.09 5.66 -2.39 -0.01 2.08 16 36 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 3.23 6.03 -2.39 -0.01 3.21 16 40 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.05 2.38 7.01 -2.39 -0.02 2.36 16 42 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -73.48 328.94 0.38 -73.10 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.98 Total: 11.39 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 4.84 Total: -7.55 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -7.41 Total: -94.92 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.05 Total: -28.22 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -73.48 0.38 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147060318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.458 kcal (2) G-P(sol) polarization free energy of solvation -73.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds