Wall clock time and date at job start Mon Mar 30 2020 00:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47259 * 2 1 4 4 C 1.36941 * 120.00007 * 274.04013 * 3 2 1 5 5 H 1.08001 * 120.00202 * 174.70594 * 4 3 2 6 6 C 1.38811 * 119.99661 * 354.70367 * 4 3 2 7 7 N 1.31616 * 120.00119 * 31.38650 * 6 4 3 8 8 Si 1.86801 * 119.99834 * 211.38229 * 6 4 3 9 9 H 1.48505 * 109.47026 * 85.00222 * 8 6 4 10 10 H 1.48500 * 109.47416 * 204.99692 * 8 6 4 11 11 H 1.48493 * 109.47650 * 325.00045 * 8 6 4 12 12 C 1.46504 * 120.00226 * 94.03893 * 3 2 1 13 13 H 1.08995 * 109.47337 * 180.02562 * 12 3 2 14 14 C 1.52994 * 109.47203 * 59.99824 * 12 3 2 15 15 C 1.53004 * 109.46949 * 300.00062 * 12 3 2 16 16 N 1.46502 * 109.46953 * 305.00326 * 15 12 3 17 17 C 1.34782 * 119.99982 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99702 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00315 * 179.97438 * 17 16 15 20 20 C 1.54634 * 111.04177 * 179.97438 * 19 17 16 21 21 C 1.51108 * 104.72273 * 93.39974 * 20 19 17 22 22 C 1.30529 * 111.09994 * 16.44044 * 21 20 19 23 23 C 1.51094 * 111.10979 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47084 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47429 * 300.00014 * 1 2 3 26 26 H 1.08999 * 109.47092 * 60.00521 * 1 2 3 27 27 H 1.09005 * 109.47184 * 239.99645 * 2 1 3 28 28 H 1.08999 * 109.46955 * 120.00016 * 2 1 3 29 29 H 0.97001 * 120.00324 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.47238 * 180.02562 * 14 12 3 31 31 H 1.08995 * 109.47398 * 300.00482 * 14 12 3 32 32 H 1.09004 * 109.46947 * 60.00014 * 14 12 3 33 33 H 1.08997 * 109.47419 * 185.00018 * 15 12 3 34 34 H 1.08998 * 109.47104 * 64.99773 * 15 12 3 35 35 H 0.96998 * 120.00265 * 359.97438 * 16 15 12 36 36 H 1.09009 * 110.94337 * 56.00979 * 19 17 16 37 37 H 1.08996 * 110.39220 * 212.21416 * 20 19 17 38 38 H 1.09001 * 110.38198 * 334.59373 * 20 19 17 39 39 H 1.07995 * 124.44608 * 196.41661 * 21 20 19 40 40 H 1.08000 * 124.44336 * 180.02562 * 22 21 20 41 41 H 1.08999 * 110.38896 * 224.75275 * 23 22 21 42 42 H 1.09000 * 110.48590 * 102.42159 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4454 3.0983 -1.1789 6 6 1.9626 1.3956 -2.3874 7 7 1.0860 0.4165 -2.4608 8 14 2.9304 1.8986 -3.9039 9 1 4.2410 1.2004 -3.9087 10 1 2.1678 1.5281 -5.1232 11 1 3.1517 3.3668 -3.8856 12 6 2.3468 2.0421 1.2656 13 1 2.6903 3.0572 1.0669 14 6 3.4516 1.2594 1.9779 15 6 1.1019 2.0901 2.1539 16 7 0.0067 2.7348 1.4252 17 6 -1.1958 2.8892 2.0142 18 8 -1.3711 2.4939 3.1473 19 6 -2.3223 3.5528 1.2649 20 6 -3.6013 3.6206 2.1312 21 6 -3.5411 4.9744 2.7997 22 6 -2.6832 5.7558 2.2021 23 6 -2.0278 5.0533 1.0359 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9423 -0.0437 -3.3025 30 1 3.6957 1.7508 2.9197 31 1 3.1077 0.2444 2.1766 32 1 4.3385 1.2251 1.3450 33 1 1.3219 2.6591 3.0572 34 1 0.8100 1.0757 2.4255 35 1 0.1470 3.0513 0.5191 36 1 -2.5160 3.0430 0.3210 37 1 -4.4895 3.5461 1.5038 38 1 -3.5959 2.8274 2.8789 39 1 -4.1307 5.2582 3.6588 40 1 -2.4692 6.7709 2.5023 41 1 -0.9530 5.2346 1.0387 42 1 -2.4658 5.3863 0.0949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152550752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:33 Heat of formation + Delta-G solvation = 6.882809 kcal Electronic energy + Delta-G solvation = -21544.428034 eV Core-core repulsion = 18525.741477 eV Total energy + Delta-G solvation = -3018.686557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90876 -37.65562 -36.58520 -33.83423 -32.15167 -30.20765 -29.42901 -28.39390 -28.03017 -25.64138 -23.76221 -22.16618 -21.61941 -19.34092 -18.91533 -18.65770 -17.00235 -16.71279 -16.19072 -15.45096 -15.17309 -14.63784 -14.00822 -13.77297 -13.08485 -12.73511 -12.61612 -12.45788 -12.26230 -12.12892 -12.04655 -11.85831 -11.46622 -11.27370 -11.20509 -11.09946 -10.97497 -10.77968 -10.71568 -10.60153 -10.30313 -9.83092 -9.63190 -9.35961 -9.28404 -8.79194 -8.37536 -8.23036 -7.02669 -5.87069 -3.07191 2.35003 3.15902 3.36953 3.45814 3.48282 3.79392 4.45294 4.65449 4.75784 5.15502 5.19963 5.33829 5.39251 5.46834 5.57836 5.74711 5.77349 5.85727 5.91587 6.00210 6.07045 6.09176 6.15952 6.25547 6.32705 6.36587 6.58341 6.63958 6.72850 6.87363 6.96406 7.00144 7.08409 7.17267 7.23245 7.65530 7.81362 8.11461 8.20313 8.28754 8.81998 9.19014 9.83169 10.28782 11.16444 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019857 B = 0.006113 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.724410 B = 4579.145420 C = 5129.257643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.165 3.835 3 N -0.593 5.593 4 C -0.262 4.262 5 H 0.075 0.925 6 C 0.010 3.990 7 N -0.880 5.880 8 Si 0.879 3.121 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.162 3.838 13 H 0.067 0.933 14 C -0.158 4.158 15 C 0.106 3.894 16 N -0.700 5.700 17 C 0.521 3.479 18 O -0.559 6.559 19 C -0.118 4.118 20 C -0.087 4.087 21 C -0.155 4.155 22 C -0.176 4.176 23 C -0.088 4.088 24 H 0.013 0.987 25 H 0.021 0.979 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.006 0.994 29 H 0.252 0.748 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.411 0.589 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 6.418 6.600 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 N -0.316 5.316 4 C -0.390 4.390 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.525 5.525 8 Si 0.709 3.291 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.209 1.209 12 C 0.053 3.947 13 H 0.085 0.915 14 C -0.218 4.218 15 C -0.020 4.020 16 N -0.350 5.350 17 C 0.306 3.694 18 O -0.438 6.438 19 C -0.139 4.139 20 C -0.125 4.125 21 C -0.173 4.173 22 C -0.194 4.194 23 C -0.125 4.125 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.248 0.752 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.880 6.023 7.230 10.600 hybrid contribution 0.539 0.322 -1.309 1.452 sum -4.341 6.345 5.921 9.704 Atomic orbital electron populations 1.22420 0.99186 0.97995 1.01359 1.20885 0.92515 0.84531 0.98009 1.44231 1.75663 1.11211 1.00453 1.19198 1.41665 0.94806 0.83312 0.90671 1.24685 0.98732 0.98265 0.97162 1.70279 1.30383 1.26656 1.25142 0.86642 0.81319 0.77942 0.83185 1.21731 1.22214 1.20851 1.20545 0.91242 0.96343 0.86616 0.91476 1.22182 0.99711 1.00631 0.99236 1.21977 0.88309 0.97198 0.94559 1.45853 1.10630 1.59515 1.19039 1.20214 0.83649 0.78933 0.86571 1.90614 1.82803 1.51383 1.19007 1.22156 0.94694 0.96820 1.00255 1.21280 0.95893 0.96845 0.98455 1.23234 0.99148 0.95820 0.99056 1.23210 0.98929 0.99556 0.97722 1.21308 1.01328 0.91991 0.97880 0.96812 0.96029 0.89443 0.89864 0.97587 0.93749 0.93684 0.92991 0.92301 0.93078 0.92181 0.75214 0.87532 0.90395 0.89437 0.86076 0.86029 0.90675 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.27 37.16 0.34 -3.05 16 2 C 0.17 3.79 5.01 -4.05 -0.02 3.77 16 3 N -0.59 -13.10 1.92 -165.66 -0.32 -13.42 16 4 C -0.26 -6.38 9.38 -15.06 -0.14 -6.52 16 5 H 0.08 1.80 7.83 -52.49 -0.41 1.39 16 6 C 0.01 0.25 4.97 -17.43 -0.09 0.16 16 7 N -0.88 -23.05 8.40 55.49 0.47 -22.58 16 8 Si 0.88 20.34 29.65 -169.99 -5.04 15.30 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.16 3.00 2.87 -67.93 -0.19 2.81 16 13 H 0.07 1.23 7.78 -51.93 -0.40 0.83 16 14 C -0.16 -2.62 9.18 37.15 0.34 -2.28 16 15 C 0.11 1.92 4.32 -4.04 -0.02 1.90 16 16 N -0.70 -12.59 3.93 -60.29 -0.24 -12.82 16 17 C 0.52 9.35 6.84 -10.99 -0.08 9.27 16 18 O -0.56 -11.66 15.53 5.56 0.09 -11.58 16 19 C -0.12 -1.72 3.55 -90.06 -0.32 -2.04 16 20 C -0.09 -1.18 6.15 -26.82 -0.17 -1.34 16 21 C -0.15 -1.94 10.78 -35.69 -0.38 -2.32 16 22 C -0.18 -2.16 10.77 -35.70 -0.38 -2.54 16 23 C -0.09 -1.12 6.35 -26.84 -0.17 -1.29 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.02 0.46 4.84 -51.93 -0.25 0.21 16 26 H 0.09 2.19 6.30 -51.93 -0.33 1.86 16 27 H 0.08 2.15 5.84 -51.93 -0.30 1.85 16 28 H 0.01 0.13 6.43 -51.93 -0.33 -0.21 16 29 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.20 6.92 -51.93 -0.36 0.84 16 35 H 0.41 7.61 7.89 -40.82 -0.32 7.29 16 36 H 0.11 1.51 8.14 -51.92 -0.42 1.08 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -27.38 326.95 -8.16 -35.54 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.77 Total: 8.10 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.27 Total: -3.47 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.09 Total: -48.83 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.04 Total: 15.30 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.38 -8.16 -35.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152550752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.424 kcal (2) G-P(sol) polarization free energy of solvation -27.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds