Wall clock time and date at job start Mon Mar 30 2020 00:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47259 * 2 1 4 4 C 1.36941 * 120.00007 * 274.04013 * 3 2 1 5 5 H 1.08001 * 120.00202 * 174.70594 * 4 3 2 6 6 C 1.38811 * 119.99661 * 354.70367 * 4 3 2 7 7 N 1.31616 * 120.00119 * 31.38650 * 6 4 3 8 8 Si 1.86801 * 119.99834 * 211.38229 * 6 4 3 9 9 H 1.48505 * 109.47026 * 85.00222 * 8 6 4 10 10 H 1.48500 * 109.47416 * 204.99692 * 8 6 4 11 11 H 1.48493 * 109.47650 * 325.00045 * 8 6 4 12 12 C 1.46504 * 120.00226 * 94.03893 * 3 2 1 13 13 H 1.08995 * 109.47337 * 180.02562 * 12 3 2 14 14 C 1.52994 * 109.47203 * 59.99824 * 12 3 2 15 15 C 1.53004 * 109.46949 * 300.00062 * 12 3 2 16 16 N 1.46502 * 109.46953 * 305.00326 * 15 12 3 17 17 C 1.34782 * 119.99982 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99702 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00315 * 179.97438 * 17 16 15 20 20 C 1.54634 * 111.04177 * 179.97438 * 19 17 16 21 21 C 1.51108 * 104.72273 * 93.39974 * 20 19 17 22 22 C 1.30529 * 111.09994 * 16.44044 * 21 20 19 23 23 C 1.51094 * 111.10979 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47084 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47429 * 300.00014 * 1 2 3 26 26 H 1.08999 * 109.47092 * 60.00521 * 1 2 3 27 27 H 1.09005 * 109.47184 * 239.99645 * 2 1 3 28 28 H 1.08999 * 109.46955 * 120.00016 * 2 1 3 29 29 H 0.97001 * 120.00324 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.47238 * 180.02562 * 14 12 3 31 31 H 1.08995 * 109.47398 * 300.00482 * 14 12 3 32 32 H 1.09004 * 109.46947 * 60.00014 * 14 12 3 33 33 H 1.08997 * 109.47419 * 185.00018 * 15 12 3 34 34 H 1.08998 * 109.47104 * 64.99773 * 15 12 3 35 35 H 0.96998 * 120.00265 * 359.97438 * 16 15 12 36 36 H 1.09009 * 110.94337 * 56.00979 * 19 17 16 37 37 H 1.08996 * 110.39220 * 212.21416 * 20 19 17 38 38 H 1.09001 * 110.38198 * 334.59373 * 20 19 17 39 39 H 1.07995 * 124.44608 * 196.41661 * 21 20 19 40 40 H 1.08000 * 124.44336 * 180.02562 * 22 21 20 41 41 H 1.08999 * 110.38896 * 224.75275 * 23 22 21 42 42 H 1.09000 * 110.48590 * 102.42159 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4454 3.0983 -1.1789 6 6 1.9626 1.3956 -2.3874 7 7 1.0860 0.4165 -2.4608 8 14 2.9304 1.8986 -3.9039 9 1 4.2410 1.2004 -3.9087 10 1 2.1678 1.5281 -5.1232 11 1 3.1517 3.3668 -3.8856 12 6 2.3468 2.0421 1.2656 13 1 2.6903 3.0572 1.0669 14 6 3.4516 1.2594 1.9779 15 6 1.1019 2.0901 2.1539 16 7 0.0067 2.7348 1.4252 17 6 -1.1958 2.8892 2.0142 18 8 -1.3711 2.4939 3.1473 19 6 -2.3223 3.5528 1.2649 20 6 -3.6013 3.6206 2.1312 21 6 -3.5411 4.9744 2.7997 22 6 -2.6832 5.7558 2.2021 23 6 -2.0278 5.0533 1.0359 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9423 -0.0437 -3.3025 30 1 3.6957 1.7508 2.9197 31 1 3.1077 0.2444 2.1766 32 1 4.3385 1.2251 1.3450 33 1 1.3219 2.6591 3.0572 34 1 0.8100 1.0757 2.4255 35 1 0.1470 3.0513 0.5191 36 1 -2.5160 3.0430 0.3210 37 1 -4.4895 3.5461 1.5038 38 1 -3.5959 2.8274 2.8789 39 1 -4.1307 5.2582 3.6588 40 1 -2.4692 6.7709 2.5023 41 1 -0.9530 5.2346 1.0387 42 1 -2.4658 5.3863 0.0949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152550752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:32 Heat of formation + Delta-G solvation = -6.895314 kcal Electronic energy + Delta-G solvation = -21545.025498 eV Core-core repulsion = 18525.741477 eV Total energy + Delta-G solvation = -3019.284021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22860 -39.07047 -38.02349 -35.47566 -33.77304 -31.99950 -30.65489 -30.07557 -29.05510 -27.00675 -25.62242 -23.66689 -23.10216 -20.88515 -20.34555 -19.63269 -18.77260 -18.06475 -17.30794 -17.16918 -16.62261 -16.14012 -15.66147 -15.26182 -14.76368 -14.31861 -14.17206 -13.80081 -13.63493 -13.53496 -13.38841 -13.13434 -13.02517 -12.76171 -12.56157 -12.45249 -12.41274 -12.35575 -12.16875 -12.08679 -12.03250 -11.59927 -11.37878 -11.12616 -10.77980 -10.17420 -9.88615 -9.73354 -8.86751 -7.79344 -4.98157 1.40865 1.51594 1.59465 1.61669 1.75218 2.41678 2.58910 3.29992 3.59107 3.66127 3.73082 3.92443 4.09171 4.35013 4.38567 4.43433 4.62972 4.69184 4.69669 4.78896 4.80140 4.85090 4.86905 4.99387 5.01046 5.03151 5.15150 5.20359 5.26791 5.31667 5.38401 5.45591 5.62445 5.70041 5.73143 5.90626 6.02953 6.20441 6.38666 6.74204 7.27464 7.38002 7.99644 8.42109 9.23105 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019857 B = 0.006113 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.724410 B = 4579.145420 C = 5129.257643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.171 3.829 3 N -0.599 5.599 4 C -0.255 4.255 5 H 0.081 0.919 6 C -0.035 4.035 7 N -0.902 5.902 8 Si 0.932 3.068 9 H -0.300 1.300 10 H -0.306 1.306 11 H -0.275 1.275 12 C 0.160 3.840 13 H 0.074 0.926 14 C -0.150 4.150 15 C 0.114 3.886 16 N -0.700 5.700 17 C 0.517 3.483 18 O -0.590 6.590 19 C -0.121 4.121 20 C -0.087 4.087 21 C -0.166 4.166 22 C -0.177 4.177 23 C -0.085 4.085 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.019 0.981 29 H 0.244 0.756 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.409 0.591 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.070 0.930 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 7.955 7.216 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 N -0.321 5.321 4 C -0.384 4.384 5 H 0.099 0.901 6 C -0.231 4.231 7 N -0.548 5.548 8 Si 0.763 3.237 9 H -0.228 1.228 10 H -0.234 1.234 11 H -0.200 1.200 12 C 0.053 3.947 13 H 0.092 0.908 14 C -0.209 4.209 15 C -0.013 4.013 16 N -0.349 5.349 17 C 0.305 3.695 18 O -0.472 6.472 19 C -0.142 4.142 20 C -0.125 4.125 21 C -0.183 4.183 22 C -0.195 4.195 23 C -0.123 4.123 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.246 0.754 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.160 0.840 41 H 0.089 0.911 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.707 7.586 7.858 11.894 hybrid contribution 0.504 -0.150 -1.442 1.535 sum -4.202 7.436 6.416 10.683 Atomic orbital electron populations 1.22210 0.99031 0.97740 1.00218 1.20688 0.92495 0.85067 0.97119 1.44319 1.75679 1.10871 1.01265 1.19438 1.39888 0.95035 0.83994 0.90118 1.25158 0.99700 0.99098 0.99108 1.70401 1.31566 1.27917 1.24919 0.85804 0.79448 0.77787 0.80666 1.22789 1.23410 1.19966 1.20727 0.91931 0.96710 0.85343 0.90778 1.22078 0.98400 1.00224 1.00240 1.21858 0.88060 0.96448 0.94897 1.45894 1.10861 1.59311 1.18833 1.20789 0.84110 0.78316 0.86300 1.90595 1.83328 1.52766 1.20516 1.22213 0.93950 0.97957 1.00051 1.21298 0.96076 0.96923 0.98168 1.23394 0.99903 0.95229 0.99802 1.23414 0.98396 1.00456 0.97252 1.21338 1.01307 0.90449 0.99182 0.96677 0.95604 0.91802 0.92799 0.96293 0.94645 0.90715 0.93582 0.92847 0.91834 0.93970 0.75437 0.87245 0.88403 0.91586 0.84442 0.84024 0.91125 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 9.27 71.98 0.67 -5.32 16 2 C 0.17 7.82 5.01 86.38 0.43 8.25 16 3 N -0.60 -25.91 1.92 -678.04 -1.30 -27.21 16 4 C -0.25 -12.16 9.38 84.03 0.79 -11.37 16 5 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 6 C -0.03 -1.75 4.97 84.86 0.42 -1.33 16 7 N -0.90 -47.75 8.40 21.65 0.18 -47.57 16 8 Si 0.93 41.90 29.65 68.60 2.03 43.93 16 9 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.31 -14.24 7.11 99.48 0.71 -13.54 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 C 0.16 5.67 2.87 44.99 0.13 5.80 16 13 H 0.07 2.54 7.78 -2.39 -0.02 2.52 16 14 C -0.15 -4.63 9.18 71.98 0.66 -3.97 16 15 C 0.11 3.97 4.32 86.38 0.37 4.34 16 16 N -0.70 -24.51 3.93 -463.06 -1.82 -26.33 16 17 C 0.52 18.23 6.84 87.65 0.60 18.83 16 18 O -0.59 -24.46 15.53 -3.04 -0.05 -24.51 16 19 C -0.12 -3.39 3.55 -10.43 -0.04 -3.42 16 20 C -0.09 -2.25 6.15 30.53 0.19 -2.06 16 21 C -0.17 -3.82 10.78 26.26 0.28 -3.53 16 22 C -0.18 -3.91 10.77 26.26 0.28 -3.63 16 23 C -0.09 -2.01 6.35 30.53 0.19 -1.81 16 24 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.03 1.11 4.84 -2.39 -0.01 1.09 16 26 H 0.06 3.22 6.30 -2.39 -0.02 3.20 16 27 H 0.05 2.82 5.84 -2.38 -0.01 2.80 16 28 H 0.02 0.80 6.43 -2.39 -0.02 0.79 16 29 H 0.24 12.93 8.31 -92.71 -0.77 12.16 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.47 6.66 -2.39 -0.02 1.45 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.64 6.92 -2.39 -0.02 1.62 16 35 H 0.41 14.78 7.89 -92.71 -0.73 14.04 16 36 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 1.99 7.01 -2.39 -0.02 1.97 16 39 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 40 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.07 1.72 7.85 -2.39 -0.02 1.70 16 42 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -57.57 326.95 4.30 -53.26 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.27 Total: 27.65 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 4.98 Total: 0.78 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -2.94 Total: -101.11 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -57.57 4.30 -53.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152550752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.367 kcal (2) G-P(sol) polarization free energy of solvation -57.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds