Wall clock time and date at job start Mon Mar 30 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47022 * 2 1 4 4 C 1.36943 * 119.99157 * 274.57297 * 3 2 1 5 5 H 1.08007 * 119.99315 * 140.38912 * 4 3 2 6 6 C 1.38813 * 120.00405 * 320.38591 * 4 3 2 7 7 N 1.31616 * 120.00274 * 156.49158 * 6 4 3 8 8 Si 1.86801 * 119.99938 * 336.49290 * 6 4 3 9 9 H 1.48500 * 109.47288 * 95.30013 * 8 6 4 10 10 H 1.48493 * 109.46989 * 215.30306 * 8 6 4 11 11 H 1.48504 * 109.46976 * 335.30210 * 8 6 4 12 12 C 1.46491 * 120.00428 * 94.57670 * 3 2 1 13 13 H 1.09004 * 109.47369 * 180.02562 * 12 3 2 14 14 C 1.52999 * 109.47341 * 59.99705 * 12 3 2 15 15 C 1.52998 * 109.47118 * 299.99481 * 12 3 2 16 16 N 1.46505 * 109.47337 * 305.00422 * 15 12 3 17 17 C 1.34781 * 120.00030 * 179.97438 * 16 15 12 18 18 O 1.21614 * 120.00109 * 0.27743 * 17 16 15 19 19 C 1.47095 * 119.99840 * 179.97438 * 17 16 15 20 20 C 1.32614 * 124.62188 * 179.69773 * 19 17 16 21 21 C 1.51113 * 110.76096 * 179.90228 * 20 19 17 22 22 C 1.54583 * 104.89375 * 343.75089 * 21 20 19 23 23 C 1.51119 * 124.62261 * 0.02562 * 19 17 16 24 24 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47369 * 300.00736 * 1 2 3 26 26 H 1.08998 * 109.47011 * 60.00271 * 1 2 3 27 27 H 1.08995 * 109.47541 * 239.99680 * 2 1 3 28 28 H 1.09000 * 109.46719 * 119.99022 * 2 1 3 29 29 H 0.96997 * 120.00103 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46920 * 60.00311 * 14 12 3 31 31 H 1.09003 * 109.47138 * 180.02562 * 14 12 3 32 32 H 1.08999 * 109.46769 * 299.99908 * 14 12 3 33 33 H 1.08997 * 109.47619 * 185.00479 * 15 12 3 34 34 H 1.09005 * 109.46915 * 65.00184 * 15 12 3 35 35 H 0.96996 * 120.00141 * 359.97438 * 16 15 12 36 36 H 1.07998 * 124.61979 * 0.02562 * 20 19 17 37 37 H 1.09001 * 110.50012 * 224.81430 * 21 20 19 38 38 H 1.08997 * 110.18086 * 102.52957 * 21 20 19 39 39 H 1.09000 * 110.98318 * 266.73974 * 22 21 20 40 40 H 1.09000 * 110.98368 * 142.93897 * 22 21 20 41 41 H 1.08998 * 110.36405 * 315.40522 * 23 19 17 42 42 H 1.09007 * 110.36180 * 77.61106 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1573 2.0582 -1.1823 5 1 1.8868 3.1021 -1.2418 6 6 2.6460 1.4027 -2.3041 7 7 2.3640 1.8571 -3.5068 8 14 3.7039 -0.1242 -2.1069 9 1 2.8509 -1.3348 -2.2160 10 1 4.7388 -0.1502 -3.1715 11 1 4.3629 -0.1013 -0.7763 12 6 2.3579 2.0382 1.2646 13 1 2.6997 3.0540 1.0660 14 6 3.4691 1.2534 1.9647 15 6 1.1210 2.0836 2.1639 16 7 0.0193 2.7305 1.4470 17 6 -1.1781 2.8821 2.0467 18 8 -1.3426 2.4865 3.1849 19 6 -2.2841 3.5322 1.3270 20 6 -3.4981 3.7234 1.8253 21 6 -4.3857 4.4209 0.8208 22 6 -3.4139 5.0049 -0.2301 23 6 -2.1939 4.0669 -0.0835 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.7058 1.3993 -4.2906 30 1 4.3503 1.2211 1.3240 31 1 3.7215 1.7419 2.9059 32 1 3.1268 0.2377 2.1633 33 1 1.3489 2.6499 3.0670 34 1 0.8315 1.0683 2.4351 35 1 0.1516 3.0497 0.5406 36 1 -3.8094 3.4234 2.8150 37 1 -4.9505 5.2202 1.3006 38 1 -5.0620 3.7042 0.3551 39 1 -3.1475 6.0333 0.0136 40 1 -3.8377 4.9400 -1.2322 41 1 -1.2677 4.6254 -0.2189 42 1 -2.2522 3.2502 -0.8032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152733330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:35 Heat of formation + Delta-G solvation = -7.228042 kcal Electronic energy + Delta-G solvation = -21403.878598 eV Core-core repulsion = 18384.580149 eV Total energy + Delta-G solvation = -3019.298449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.70955 -37.84414 -36.92821 -33.87597 -32.10935 -31.22194 -29.41160 -28.67285 -28.27361 -25.70880 -23.66709 -22.44803 -21.69298 -20.56220 -19.37171 -18.23617 -16.98352 -16.85513 -15.77220 -15.70454 -15.36255 -14.71070 -14.42483 -13.97668 -13.06955 -12.90941 -12.80277 -12.72671 -12.56172 -12.46029 -12.20693 -11.92068 -11.77034 -11.59372 -11.36475 -11.25096 -11.16486 -11.09117 -11.01626 -10.73760 -10.39542 -9.99217 -9.74506 -9.58599 -9.48755 -8.87814 -8.52847 -8.46077 -6.87791 -6.07711 -3.50246 1.57843 3.29606 3.44372 3.49733 3.63300 3.72916 4.48444 4.58364 4.67436 4.90046 5.01592 5.20272 5.23648 5.33757 5.46196 5.64368 5.74838 5.79993 5.83577 5.92418 5.95792 5.99736 6.01030 6.06076 6.18970 6.23571 6.24627 6.34403 6.40365 6.46130 6.60855 6.65821 6.70108 6.77534 6.88848 7.00240 7.14947 8.00020 8.07381 8.29180 8.66641 8.92984 9.64367 10.07453 11.07197 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.006303 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.410086 B = 4441.569458 C = 5207.723023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 N -0.598 5.598 4 C -0.273 4.273 5 H 0.077 0.923 6 C 0.043 3.957 7 N -0.895 5.895 8 Si 0.877 3.123 9 H -0.287 1.287 10 H -0.304 1.304 11 H -0.267 1.267 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.162 4.162 15 C 0.107 3.893 16 N -0.698 5.698 17 C 0.558 3.442 18 O -0.562 6.562 19 C -0.179 4.179 20 C -0.092 4.092 21 C -0.104 4.104 22 C -0.122 4.122 23 C -0.093 4.093 24 H 0.032 0.968 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.263 0.737 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.413 0.587 36 H 0.134 0.866 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 3.413 7.580 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 N -0.321 5.321 4 C -0.401 4.401 5 H 0.094 0.906 6 C -0.158 4.158 7 N -0.535 5.535 8 Si 0.708 3.292 9 H -0.215 1.215 10 H -0.232 1.232 11 H -0.192 1.192 12 C 0.047 3.953 13 H 0.096 0.904 14 C -0.221 4.221 15 C -0.018 4.018 16 N -0.348 5.348 17 C 0.346 3.654 18 O -0.444 6.444 19 C -0.182 4.182 20 C -0.111 4.111 21 C -0.141 4.141 22 C -0.160 4.160 23 C -0.130 4.130 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.250 0.750 36 H 0.152 0.848 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.091 3.133 8.155 11.907 hybrid contribution 0.735 -0.945 -0.499 1.297 sum -7.356 2.188 7.656 10.840 Atomic orbital electron populations 1.22346 0.98862 0.99239 1.02146 1.21038 0.92669 0.86700 0.98724 1.44213 1.74526 1.11392 1.01984 1.18669 1.39245 0.96733 0.85491 0.90583 1.25491 0.97360 0.97791 0.95202 1.69876 1.44390 1.41788 0.97469 0.86934 0.81246 0.83556 0.77511 1.21539 1.23165 1.19203 1.20785 0.90641 0.97324 0.86533 0.90407 1.22231 0.99931 1.00365 0.99616 1.21943 0.87739 0.97222 0.94941 1.45878 1.10610 1.59165 1.19186 1.17985 0.82675 0.79030 0.85744 1.90734 1.83373 1.51759 1.18494 1.21953 0.95172 1.03664 0.97403 1.23932 0.93668 0.94790 0.98741 1.21443 0.97844 0.99442 0.95364 1.22418 0.95324 0.99079 0.99135 1.21272 0.99315 0.99165 0.93277 0.94853 0.92975 0.92326 0.93524 0.94278 0.92706 0.92119 0.93390 0.93246 0.92406 0.92116 0.74963 0.84845 0.90641 0.89995 0.91019 0.90571 0.90523 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.83 37.16 0.37 -2.88 16 2 C 0.13 2.80 4.70 -4.04 -0.02 2.78 16 3 N -0.60 -12.80 1.42 -165.66 -0.23 -13.04 16 4 C -0.27 -6.89 9.50 -15.06 -0.14 -7.03 16 5 H 0.08 2.04 8.06 -52.48 -0.42 1.61 16 6 C 0.04 1.17 5.29 -17.43 -0.09 1.08 16 7 N -0.90 -25.80 13.97 55.49 0.78 -25.03 16 8 Si 0.88 21.47 25.23 -169.99 -4.29 17.18 16 9 H -0.29 -6.99 6.66 56.52 0.38 -6.61 16 10 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 12 C 0.15 2.81 2.87 -67.94 -0.19 2.62 16 13 H 0.08 1.43 7.89 -51.93 -0.41 1.03 16 14 C -0.16 -2.67 9.18 37.16 0.34 -2.33 16 15 C 0.11 1.84 4.33 -4.04 -0.02 1.82 16 16 N -0.70 -12.09 3.98 -61.49 -0.24 -12.33 16 17 C 0.56 9.87 7.55 -12.67 -0.10 9.78 16 18 O -0.56 -11.49 16.77 5.26 0.09 -11.41 16 19 C -0.18 -2.65 6.09 -102.73 -0.63 -3.28 16 20 C -0.09 -1.17 10.43 -36.01 -0.38 -1.55 16 21 C -0.10 -1.03 6.80 -26.85 -0.18 -1.21 16 22 C -0.12 -1.27 7.17 -25.06 -0.18 -1.45 16 23 C -0.09 -1.23 6.02 -26.84 -0.16 -1.39 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.99 4.89 -51.93 -0.25 0.74 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.08 3.44 -51.93 -0.18 0.90 16 28 H 0.04 0.75 6.43 -51.93 -0.33 0.42 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.80 6.66 -51.93 -0.35 0.46 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.10 6.96 -51.93 -0.36 0.74 16 35 H 0.41 7.36 6.90 -40.82 -0.28 7.08 16 36 H 0.13 1.69 8.03 -52.49 -0.42 1.27 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.03 7.83 -51.93 -0.41 0.62 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -29.36 328.83 -7.13 -36.49 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.80 Total: 6.23 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.38 Total: -3.05 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.30 Total: -50.39 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.29 Total: 17.18 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.36 -7.13 -36.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152733330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.264 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds