Wall clock time and date at job start Mon Mar 30 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47022 * 2 1 4 4 C 1.36943 * 119.99157 * 274.57297 * 3 2 1 5 5 H 1.08007 * 119.99315 * 140.38912 * 4 3 2 6 6 C 1.38813 * 120.00405 * 320.38591 * 4 3 2 7 7 N 1.31616 * 120.00274 * 156.49158 * 6 4 3 8 8 Si 1.86801 * 119.99938 * 336.49290 * 6 4 3 9 9 H 1.48500 * 109.47288 * 95.30013 * 8 6 4 10 10 H 1.48493 * 109.46989 * 215.30306 * 8 6 4 11 11 H 1.48504 * 109.46976 * 335.30210 * 8 6 4 12 12 C 1.46491 * 120.00428 * 94.57670 * 3 2 1 13 13 H 1.09004 * 109.47369 * 180.02562 * 12 3 2 14 14 C 1.52999 * 109.47341 * 59.99705 * 12 3 2 15 15 C 1.52998 * 109.47118 * 299.99481 * 12 3 2 16 16 N 1.46505 * 109.47337 * 305.00422 * 15 12 3 17 17 C 1.34781 * 120.00030 * 179.97438 * 16 15 12 18 18 O 1.21614 * 120.00109 * 0.27743 * 17 16 15 19 19 C 1.47095 * 119.99840 * 179.97438 * 17 16 15 20 20 C 1.32614 * 124.62188 * 179.69773 * 19 17 16 21 21 C 1.51113 * 110.76096 * 179.90228 * 20 19 17 22 22 C 1.54583 * 104.89375 * 343.75089 * 21 20 19 23 23 C 1.51119 * 124.62261 * 0.02562 * 19 17 16 24 24 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47369 * 300.00736 * 1 2 3 26 26 H 1.08998 * 109.47011 * 60.00271 * 1 2 3 27 27 H 1.08995 * 109.47541 * 239.99680 * 2 1 3 28 28 H 1.09000 * 109.46719 * 119.99022 * 2 1 3 29 29 H 0.96997 * 120.00103 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46920 * 60.00311 * 14 12 3 31 31 H 1.09003 * 109.47138 * 180.02562 * 14 12 3 32 32 H 1.08999 * 109.46769 * 299.99908 * 14 12 3 33 33 H 1.08997 * 109.47619 * 185.00479 * 15 12 3 34 34 H 1.09005 * 109.46915 * 65.00184 * 15 12 3 35 35 H 0.96996 * 120.00141 * 359.97438 * 16 15 12 36 36 H 1.07998 * 124.61979 * 0.02562 * 20 19 17 37 37 H 1.09001 * 110.50012 * 224.81430 * 21 20 19 38 38 H 1.08997 * 110.18086 * 102.52957 * 21 20 19 39 39 H 1.09000 * 110.98318 * 266.73974 * 22 21 20 40 40 H 1.09000 * 110.98368 * 142.93897 * 22 21 20 41 41 H 1.08998 * 110.36405 * 315.40522 * 23 19 17 42 42 H 1.09007 * 110.36180 * 77.61106 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1573 2.0582 -1.1823 5 1 1.8868 3.1021 -1.2418 6 6 2.6460 1.4027 -2.3041 7 7 2.3640 1.8571 -3.5068 8 14 3.7039 -0.1242 -2.1069 9 1 2.8509 -1.3348 -2.2160 10 1 4.7388 -0.1502 -3.1715 11 1 4.3629 -0.1013 -0.7763 12 6 2.3579 2.0382 1.2646 13 1 2.6997 3.0540 1.0660 14 6 3.4691 1.2534 1.9647 15 6 1.1210 2.0836 2.1639 16 7 0.0193 2.7305 1.4470 17 6 -1.1781 2.8821 2.0467 18 8 -1.3426 2.4865 3.1849 19 6 -2.2841 3.5322 1.3270 20 6 -3.4981 3.7234 1.8253 21 6 -4.3857 4.4209 0.8208 22 6 -3.4139 5.0049 -0.2301 23 6 -2.1939 4.0669 -0.0835 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.7058 1.3993 -4.2906 30 1 4.3503 1.2211 1.3240 31 1 3.7215 1.7419 2.9059 32 1 3.1268 0.2377 2.1633 33 1 1.3489 2.6499 3.0670 34 1 0.8315 1.0683 2.4351 35 1 0.1516 3.0497 0.5406 36 1 -3.8094 3.4234 2.8150 37 1 -4.9505 5.2202 1.3006 38 1 -5.0620 3.7042 0.3551 39 1 -3.1475 6.0333 0.0136 40 1 -3.8377 4.9400 -1.2322 41 1 -1.2677 4.6254 -0.2189 42 1 -2.2522 3.2502 -0.8032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152733330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:35 Heat of formation + Delta-G solvation = -24.188590 kcal Electronic energy + Delta-G solvation = -21404.614063 eV Core-core repulsion = 18384.580149 eV Total energy + Delta-G solvation = -3020.033914 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01878 -39.14898 -38.34116 -35.46076 -33.91824 -32.85427 -30.63833 -30.20802 -29.30713 -27.01710 -25.56120 -24.06856 -22.92426 -21.53123 -20.94895 -19.54436 -18.78178 -18.06998 -17.55639 -17.05029 -16.52803 -16.31781 -15.78280 -15.40117 -14.89000 -14.59591 -14.42579 -14.07661 -13.78046 -13.69701 -13.57347 -13.43699 -13.03849 -12.88219 -12.72601 -12.62383 -12.58100 -12.56072 -12.14962 -12.05135 -11.98568 -11.79595 -11.41562 -11.35189 -10.93182 -10.54445 -10.08219 -9.74171 -8.72490 -8.16112 -5.53603 0.43115 1.33746 1.44558 1.54435 2.31799 2.41128 2.47048 3.08296 3.33857 3.59082 3.68365 3.99783 4.14213 4.21445 4.27657 4.34213 4.38614 4.51322 4.67869 4.70048 4.74354 4.78897 4.83342 4.84941 4.87421 4.92473 4.99336 5.07266 5.18146 5.19572 5.26904 5.35571 5.36993 5.41096 5.50410 5.58821 5.63247 5.99551 6.24091 6.66346 7.03836 7.27833 7.67225 8.12540 9.02503 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.006303 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.410086 B = 4441.569458 C = 5207.723023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 N -0.603 5.603 4 C -0.246 4.246 5 H 0.052 0.948 6 C -0.009 4.009 7 N -0.941 5.941 8 Si 0.930 3.070 9 H -0.285 1.285 10 H -0.316 1.316 11 H -0.255 1.255 12 C 0.155 3.845 13 H 0.073 0.927 14 C -0.155 4.155 15 C 0.115 3.885 16 N -0.699 5.699 17 C 0.555 3.445 18 O -0.595 6.595 19 C -0.215 4.215 20 C -0.068 4.068 21 C -0.099 4.099 22 C -0.117 4.117 23 C -0.091 4.091 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.260 0.740 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 3.300 9.191 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.004 3.996 3 N -0.327 5.327 4 C -0.376 4.376 5 H 0.070 0.930 6 C -0.206 4.206 7 N -0.585 5.585 8 Si 0.760 3.240 9 H -0.213 1.213 10 H -0.245 1.245 11 H -0.179 1.179 12 C 0.048 3.952 13 H 0.091 0.909 14 C -0.214 4.214 15 C -0.011 4.011 16 N -0.348 5.348 17 C 0.345 3.655 18 O -0.479 6.479 19 C -0.218 4.218 20 C -0.087 4.087 21 C -0.136 4.136 22 C -0.154 4.154 23 C -0.128 4.128 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.065 3.013 9.806 13.690 hybrid contribution 0.944 -0.842 -0.898 1.551 sum -8.120 2.171 8.908 12.248 Atomic orbital electron populations 1.22202 0.97889 1.00228 1.01046 1.21105 0.93442 0.86176 0.98837 1.44249 1.74881 1.11555 1.01973 1.18590 1.36574 0.95766 0.86686 0.93003 1.25980 0.99032 1.00569 0.95065 1.69984 1.46540 1.43801 0.98133 0.86073 0.79559 0.80997 0.77371 1.21311 1.24497 1.17897 1.20879 0.91852 0.97120 0.85309 0.90899 1.22136 0.98219 1.00611 1.00474 1.21852 0.87073 0.97182 0.94963 1.45917 1.10892 1.59084 1.18930 1.18421 0.83149 0.78476 0.85449 1.90703 1.83916 1.53436 1.19825 1.21920 0.95282 1.06156 0.98428 1.24314 0.93235 0.92160 0.99025 1.21528 0.97422 1.00215 0.94418 1.22443 0.93966 0.98786 1.00233 1.21231 1.00374 0.99148 0.92067 0.92846 0.92708 0.94668 0.95488 0.91896 0.93132 0.93557 0.90275 0.92719 0.91143 0.92585 0.75424 0.84696 0.87989 0.88405 0.90106 0.89214 0.91750 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.85 9.83 71.98 0.71 -5.15 16 2 C 0.13 5.21 4.70 86.38 0.41 5.62 16 3 N -0.60 -25.40 1.42 -678.04 -0.96 -26.36 16 4 C -0.25 -12.58 9.50 84.03 0.80 -11.78 16 5 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 6 C -0.01 -0.50 5.29 84.86 0.45 -0.05 16 7 N -0.94 -55.78 13.97 21.65 0.30 -55.48 16 8 Si 0.93 44.57 25.23 68.60 1.73 46.31 16 9 H -0.29 -13.45 6.66 99.48 0.66 -12.78 16 10 H -0.32 -15.66 7.11 99.48 0.71 -14.95 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 12 C 0.15 5.41 2.87 44.99 0.13 5.54 16 13 H 0.07 2.63 7.89 -2.38 -0.02 2.61 16 14 C -0.16 -4.71 9.18 71.98 0.66 -4.05 16 15 C 0.11 3.78 4.33 86.38 0.37 4.16 16 16 N -0.70 -24.09 3.98 -466.70 -1.86 -25.95 16 17 C 0.56 19.51 7.55 86.57 0.65 20.16 16 18 O -0.59 -24.02 16.77 -4.08 -0.07 -24.08 16 19 C -0.21 -6.24 6.09 -18.57 -0.11 -6.36 16 20 C -0.07 -1.60 10.43 24.66 0.26 -1.35 16 21 C -0.10 -1.65 6.80 30.52 0.21 -1.44 16 22 C -0.12 -2.18 7.17 31.67 0.23 -1.95 16 23 C -0.09 -2.37 6.02 30.52 0.18 -2.19 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 2.03 4.89 -2.39 -0.01 2.02 16 26 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.03 1.22 3.44 -2.39 -0.01 1.21 16 28 H 0.06 2.25 6.43 -2.39 -0.02 2.24 16 29 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.60 6.66 -2.39 -0.02 1.59 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.92 6.96 -2.38 -0.02 1.91 16 35 H 0.41 14.85 6.90 -92.71 -0.64 14.21 16 36 H 0.14 3.16 8.03 -2.91 -0.02 3.13 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.78 7.83 -2.39 -0.02 1.76 16 42 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -63.62 328.83 4.41 -59.21 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.32 Total: 25.18 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 4.94 Total: 1.18 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -2.52 Total: -107.79 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.08 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.73 Total: 46.31 kcal Total: -63.62 4.41 -59.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152733330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.021 kcal (2) G-P(sol) polarization free energy of solvation -63.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds