Wall clock time and date at job start Mon Mar 30 2020 00:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46949 * 2 1 4 4 C 1.36936 * 119.99372 * 275.73192 * 3 2 1 5 5 H 1.08003 * 120.00101 * 33.27920 * 4 3 2 6 6 C 1.38812 * 119.99548 * 213.27342 * 4 3 2 7 7 N 1.31619 * 120.00297 * 17.27455 * 6 4 3 8 8 Si 1.86801 * 119.99814 * 197.27437 * 6 4 3 9 9 H 1.48501 * 109.47367 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47333 * 120.00134 * 8 6 4 11 11 H 1.48496 * 109.47275 * 240.00028 * 8 6 4 12 12 C 1.46491 * 120.00264 * 95.73503 * 3 2 1 13 13 H 1.08995 * 109.47733 * 180.02562 * 12 3 2 14 14 C 1.53006 * 109.47349 * 60.06736 * 12 3 2 15 15 C 1.53006 * 109.47235 * 300.07251 * 12 3 2 16 16 N 1.46499 * 109.46743 * 304.99772 * 15 12 3 17 17 C 1.34779 * 119.99965 * 179.97438 * 16 15 12 18 18 O 1.21284 * 119.99636 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00069 * 180.02562 * 17 16 15 20 20 H 1.09000 * 115.55316 * 325.72749 * 19 17 16 21 21 C 1.53012 * 117.49983 * 111.39439 * 19 17 16 22 22 C 1.52991 * 59.99776 * 107.48894 * 21 19 17 23 23 C 1.53000 * 138.58892 * 130.89230 * 22 21 19 24 24 C 1.52998 * 138.59074 * 229.10668 * 22 21 19 25 25 H 1.08999 * 109.47338 * 60.00328 * 1 2 3 26 26 H 1.08995 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47224 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.46851 * 239.99492 * 2 1 3 29 29 H 1.09000 * 109.46822 * 119.99615 * 2 1 3 30 30 H 0.96994 * 119.99834 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47284 * 179.97438 * 14 12 3 32 32 H 1.09000 * 109.46483 * 59.99845 * 14 12 3 33 33 H 1.09000 * 109.46853 * 300.00527 * 14 12 3 34 34 H 1.09003 * 109.46944 * 65.00005 * 15 12 3 35 35 H 1.08994 * 109.47495 * 185.00163 * 15 12 3 36 36 H 0.96997 * 120.00265 * 0.02562 * 16 15 12 37 37 H 1.08990 * 117.50032 * 214.97882 * 21 19 17 38 38 H 1.08998 * 117.49433 * 0.02562 * 21 19 17 39 39 H 1.08995 * 117.50274 * 238.38457 * 23 22 21 40 40 H 1.08998 * 117.49426 * 23.40839 * 23 22 21 41 41 H 1.09004 * 117.49635 * 336.59715 * 24 22 21 42 42 H 1.09001 * 117.49988 * 121.59200 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1348 2.0662 -1.1801 5 1 1.4368 1.8810 -1.9831 6 6 3.1501 2.9985 -1.3440 7 7 4.1872 2.9916 -0.5336 8 14 3.0444 4.2630 -2.7149 9 1 1.7880 4.0599 -3.4800 10 1 3.0523 5.6283 -2.1307 11 1 4.2086 4.1067 -3.6234 12 6 2.3820 2.0297 1.2623 13 1 2.7200 3.0468 1.0642 14 6 3.5075 1.2411 1.9350 15 6 1.1630 2.0672 2.1861 16 7 0.0468 2.7179 1.4955 17 6 -1.1388 2.8639 2.1197 18 8 -1.2814 2.4569 3.2533 19 6 -2.2871 3.5328 1.4092 20 1 -2.0133 4.3390 0.7286 21 6 -3.4850 2.6612 1.0262 22 6 -3.6067 3.6685 2.1713 23 6 -4.5585 4.7753 2.6296 24 6 -4.0964 3.7049 3.6204 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.8963 3.6434 -0.6480 31 1 3.7784 1.7238 2.8740 32 1 4.3760 1.2144 1.2768 33 1 3.1703 0.2237 2.1330 34 1 0.8799 1.0496 2.4557 35 1 1.4080 2.6273 3.0885 36 1 0.1608 3.0431 0.5888 37 1 -3.9994 2.8943 0.0941 38 1 -3.4426 1.6041 1.2887 39 1 -4.1467 5.7780 2.7436 40 1 -5.5905 4.7274 2.2821 41 1 -4.8244 2.9528 3.9246 42 1 -3.3803 4.0030 4.3862 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155469272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:47 Heat of formation + Delta-G solvation = 38.246711 kcal Electronic energy + Delta-G solvation = -21261.533010 eV Core-core repulsion = 18244.206494 eV Total energy + Delta-G solvation = -3017.326516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.61164 -37.63259 -36.58560 -33.55853 -32.53819 -31.86903 -30.95819 -28.17980 -26.00755 -23.94756 -23.12633 -22.37928 -21.66320 -20.07880 -19.34098 -18.72973 -16.97638 -16.56928 -15.62696 -15.02373 -14.90291 -14.75379 -14.48620 -13.90355 -13.82498 -13.28359 -12.68706 -12.32243 -12.28728 -12.13956 -11.81512 -11.63532 -11.50291 -11.41115 -11.06891 -10.94698 -10.82272 -10.67371 -10.28261 -10.15137 -10.09546 -10.01335 -9.93381 -9.63287 -9.42766 -9.25110 -8.52261 -8.32803 -6.66999 -5.88830 -3.37317 2.91596 3.29561 3.39711 3.40133 3.48105 3.83596 4.05243 4.39280 4.41596 4.86973 4.94207 5.26324 5.35693 5.40125 5.52865 5.59219 5.66505 5.68045 5.74622 5.92322 5.93280 6.05013 6.08375 6.18124 6.21130 6.27829 6.39426 6.50167 6.55847 6.64032 6.69665 6.84079 6.92178 7.12915 7.17679 7.48949 7.58178 7.77032 8.23472 8.42889 8.82099 9.15755 9.77292 10.34562 11.17751 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019403 B = 0.005878 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.725582 B = 4762.630426 C = 5311.320002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.261 4.261 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.176 3.824 13 H 0.099 0.901 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.697 5.697 17 C 0.532 3.468 18 O -0.556 6.556 19 C -0.136 4.136 20 H 0.121 0.879 21 C -0.100 4.100 22 C -0.202 4.202 23 C -0.133 4.133 24 C -0.113 4.113 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.254 0.746 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.411 0.589 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 0.963 3.654 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.022 4.022 16 N -0.347 5.347 17 C 0.318 3.682 18 O -0.435 6.435 19 C -0.157 4.157 20 H 0.139 0.861 21 C -0.137 4.137 22 C -0.202 4.202 23 C -0.170 4.170 24 C -0.150 4.150 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.248 0.752 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.569 0.763 4.437 12.414 hybrid contribution 0.242 0.842 -1.243 1.520 sum -11.327 1.605 3.194 11.878 Atomic orbital electron populations 1.22448 1.00004 0.98918 1.01598 1.20754 0.91718 0.87443 0.98670 1.43880 1.75953 1.08273 1.02262 1.19127 1.08492 1.18104 0.93351 0.91817 1.25153 0.94548 1.01385 0.97820 1.70015 1.07893 1.35891 1.39556 0.86346 0.77611 0.81610 0.81899 1.20193 1.21583 1.21716 1.20494 0.88920 0.99500 0.84205 0.88279 1.22023 1.01142 0.97952 0.99229 1.22147 0.88171 0.96194 0.95727 1.45923 1.10752 1.59022 1.19025 1.19586 0.83207 0.79313 0.86114 1.90634 1.83306 1.50961 1.18599 1.22002 0.88324 1.02955 1.02463 0.86071 1.22614 0.97727 0.96308 0.97038 1.21134 0.98164 1.03577 0.97357 1.22734 0.97817 0.94006 1.02421 1.22543 1.01583 1.00230 0.90656 0.93410 0.94954 0.92921 0.94154 0.94569 0.93623 0.94870 0.90315 0.95172 0.92952 0.93115 0.75228 0.87844 0.88223 0.88720 0.88603 0.88820 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.87 37.16 0.37 -2.71 16 2 C 0.14 2.84 5.67 -4.04 -0.02 2.82 16 3 N -0.58 -13.04 1.85 -165.66 -0.31 -13.35 16 4 C -0.26 -6.44 9.26 -15.06 -0.14 -6.58 16 5 H 0.06 1.59 7.89 -52.48 -0.41 1.17 16 6 C 0.01 0.28 4.85 -17.43 -0.08 0.19 16 7 N -0.89 -23.61 10.61 55.49 0.59 -23.02 16 8 Si 0.90 20.22 29.59 -169.99 -5.03 15.19 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.18 3.79 1.92 -67.93 -0.13 3.66 16 13 H 0.10 2.42 6.03 -51.93 -0.31 2.11 16 14 C -0.14 -2.97 9.05 37.16 0.34 -2.63 16 15 C 0.10 2.01 4.34 -4.04 -0.02 2.00 16 16 N -0.70 -12.85 3.99 -60.29 -0.24 -13.09 16 17 C 0.53 9.59 7.38 -10.99 -0.08 9.51 16 18 O -0.56 -11.57 16.25 5.55 0.09 -11.48 16 19 C -0.14 -2.00 6.19 -91.77 -0.57 -2.56 16 20 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 21 C -0.10 -1.27 10.23 -26.73 -0.27 -1.54 16 22 C -0.20 -2.69 5.05 -154.52 -0.78 -3.48 16 23 C -0.13 -1.42 10.53 -26.73 -0.28 -1.70 16 24 C -0.11 -1.42 10.16 -26.73 -0.27 -1.69 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.98 4.99 -51.93 -0.26 0.72 16 28 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.04 0.71 6.44 -51.93 -0.33 0.38 16 30 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.84 7.40 -51.93 -0.38 1.45 16 33 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 34 H 0.05 1.05 7.05 -51.93 -0.37 0.69 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.41 7.73 7.89 -40.82 -0.32 7.41 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -27.57 338.43 -8.69 -36.27 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.95 Total: 9.11 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.95 Total: -4.71 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.04 Total: -49.47 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.57 -8.69 -36.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155469272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.512 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds