Wall clock time and date at job start Mon Mar 30 2020 00:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46949 * 2 1 4 4 C 1.36936 * 119.99372 * 275.73192 * 3 2 1 5 5 H 1.08003 * 120.00101 * 33.27920 * 4 3 2 6 6 C 1.38812 * 119.99548 * 213.27342 * 4 3 2 7 7 N 1.31619 * 120.00297 * 17.27455 * 6 4 3 8 8 Si 1.86801 * 119.99814 * 197.27437 * 6 4 3 9 9 H 1.48501 * 109.47367 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47333 * 120.00134 * 8 6 4 11 11 H 1.48496 * 109.47275 * 240.00028 * 8 6 4 12 12 C 1.46491 * 120.00264 * 95.73503 * 3 2 1 13 13 H 1.08995 * 109.47733 * 180.02562 * 12 3 2 14 14 C 1.53006 * 109.47349 * 60.06736 * 12 3 2 15 15 C 1.53006 * 109.47235 * 300.07251 * 12 3 2 16 16 N 1.46499 * 109.46743 * 304.99772 * 15 12 3 17 17 C 1.34779 * 119.99965 * 179.97438 * 16 15 12 18 18 O 1.21284 * 119.99636 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00069 * 180.02562 * 17 16 15 20 20 H 1.09000 * 115.55316 * 325.72749 * 19 17 16 21 21 C 1.53012 * 117.49983 * 111.39439 * 19 17 16 22 22 C 1.52991 * 59.99776 * 107.48894 * 21 19 17 23 23 C 1.53000 * 138.58892 * 130.89230 * 22 21 19 24 24 C 1.52998 * 138.59074 * 229.10668 * 22 21 19 25 25 H 1.08999 * 109.47338 * 60.00328 * 1 2 3 26 26 H 1.08995 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47224 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.46851 * 239.99492 * 2 1 3 29 29 H 1.09000 * 109.46822 * 119.99615 * 2 1 3 30 30 H 0.96994 * 119.99834 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47284 * 179.97438 * 14 12 3 32 32 H 1.09000 * 109.46483 * 59.99845 * 14 12 3 33 33 H 1.09000 * 109.46853 * 300.00527 * 14 12 3 34 34 H 1.09003 * 109.46944 * 65.00005 * 15 12 3 35 35 H 1.08994 * 109.47495 * 185.00163 * 15 12 3 36 36 H 0.96997 * 120.00265 * 0.02562 * 16 15 12 37 37 H 1.08990 * 117.50032 * 214.97882 * 21 19 17 38 38 H 1.08998 * 117.49433 * 0.02562 * 21 19 17 39 39 H 1.08995 * 117.50274 * 238.38457 * 23 22 21 40 40 H 1.08998 * 117.49426 * 23.40839 * 23 22 21 41 41 H 1.09004 * 117.49635 * 336.59715 * 24 22 21 42 42 H 1.09001 * 117.49988 * 121.59200 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1348 2.0662 -1.1801 5 1 1.4368 1.8810 -1.9831 6 6 3.1501 2.9985 -1.3440 7 7 4.1872 2.9916 -0.5336 8 14 3.0444 4.2630 -2.7149 9 1 1.7880 4.0599 -3.4800 10 1 3.0523 5.6283 -2.1307 11 1 4.2086 4.1067 -3.6234 12 6 2.3820 2.0297 1.2623 13 1 2.7200 3.0468 1.0642 14 6 3.5075 1.2411 1.9350 15 6 1.1630 2.0672 2.1861 16 7 0.0468 2.7179 1.4955 17 6 -1.1388 2.8639 2.1197 18 8 -1.2814 2.4569 3.2533 19 6 -2.2871 3.5328 1.4092 20 1 -2.0133 4.3390 0.7286 21 6 -3.4850 2.6612 1.0262 22 6 -3.6067 3.6685 2.1713 23 6 -4.5585 4.7753 2.6296 24 6 -4.0964 3.7049 3.6204 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.8963 3.6434 -0.6480 31 1 3.7784 1.7238 2.8740 32 1 4.3760 1.2144 1.2768 33 1 3.1703 0.2237 2.1330 34 1 0.8799 1.0496 2.4557 35 1 1.4080 2.6273 3.0885 36 1 0.1608 3.0431 0.5888 37 1 -3.9994 2.8943 0.0941 38 1 -3.4426 1.6041 1.2887 39 1 -4.1467 5.7780 2.7436 40 1 -5.5905 4.7274 2.2821 41 1 -4.8244 2.9528 3.9246 42 1 -3.3803 4.0030 4.3862 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155469272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:46 Heat of formation + Delta-G solvation = 24.488429 kcal Electronic energy + Delta-G solvation = -21262.129614 eV Core-core repulsion = 18244.206494 eV Total energy + Delta-G solvation = -3017.923120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96414 -39.00115 -38.04303 -35.17082 -33.74428 -33.54312 -32.56462 -29.93310 -27.52750 -25.78786 -24.42659 -23.28590 -23.26083 -21.32224 -21.00684 -19.98342 -18.70697 -17.95956 -17.11238 -16.52705 -16.43082 -15.89986 -15.81476 -15.46860 -15.29708 -14.85049 -14.31088 -13.96559 -13.78236 -13.56971 -13.38143 -13.19387 -12.81767 -12.70369 -12.61150 -12.54085 -12.38349 -12.33810 -12.01510 -11.86190 -11.35659 -11.16921 -11.14932 -11.04874 -10.90596 -10.64992 -10.43126 -9.87112 -8.52123 -7.81166 -5.31221 1.48922 1.54658 1.58647 1.61697 2.25322 2.55400 2.78359 2.95134 3.33440 3.37664 3.65206 3.86064 3.91530 4.16722 4.26389 4.46688 4.51730 4.58029 4.64027 4.69842 4.76477 4.78622 4.80738 4.82428 4.89239 4.93585 4.98206 5.03003 5.05614 5.07036 5.22315 5.29132 5.33714 5.54659 5.62073 5.70167 5.77704 5.87793 6.51101 6.76066 7.24907 7.37175 7.93513 8.46212 9.22994 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019403 B = 0.005878 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.725582 B = 4762.630426 C = 5311.320002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.062 0.938 6 C -0.033 4.033 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.293 1.293 11 H -0.300 1.300 12 C 0.183 3.817 13 H 0.070 0.930 14 C -0.135 4.135 15 C 0.117 3.883 16 N -0.697 5.697 17 C 0.531 3.469 18 O -0.588 6.588 19 C -0.153 4.153 20 H 0.135 0.865 21 C -0.085 4.085 22 C -0.222 4.222 23 C -0.105 4.105 24 C -0.128 4.128 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.248 0.752 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.410 0.590 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.847 1.196 3.103 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.389 4.389 5 H 0.080 0.920 6 C -0.230 4.230 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.220 1.220 11 H -0.228 1.228 12 C 0.075 3.925 13 H 0.088 0.912 14 C -0.195 4.195 15 C -0.009 4.009 16 N -0.346 5.346 17 C 0.319 3.681 18 O -0.469 6.469 19 C -0.174 4.174 20 H 0.153 0.847 21 C -0.122 4.122 22 C -0.223 4.223 23 C -0.141 4.141 24 C -0.165 4.165 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.246 0.754 37 H 0.149 0.851 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.122 0.878 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.767 0.986 3.878 14.337 hybrid contribution 0.914 0.713 -1.026 1.548 sum -12.853 1.700 2.852 13.275 Atomic orbital electron populations 1.22247 0.97955 1.00209 1.00970 1.20841 0.93161 0.86206 0.98513 1.43993 1.76100 1.09153 1.01973 1.19287 1.07830 1.17885 0.93865 0.91988 1.25718 0.94505 1.03047 0.99747 1.70147 1.08443 1.36393 1.41077 0.85452 0.77361 0.79396 0.79617 1.19062 1.22048 1.22792 1.20329 0.89842 0.97918 0.84362 0.91246 1.21888 0.99662 0.98765 0.99137 1.21852 0.87810 0.96112 0.95105 1.45902 1.10831 1.59001 1.18846 1.20172 0.83591 0.78588 0.85756 1.90613 1.83824 1.52432 1.20061 1.21984 0.87678 1.04114 1.03647 0.84684 1.22692 0.95968 0.95520 0.98012 1.21406 0.97476 1.05417 0.97989 1.22869 0.98403 0.93357 0.99510 1.22597 1.01822 1.01907 0.90175 0.93829 0.92703 0.93611 0.95010 0.94006 0.94302 0.93312 0.93264 0.93950 0.93258 0.93304 0.75355 0.85069 0.89190 0.87993 0.86029 0.87775 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.87 71.98 0.71 -4.60 16 2 C 0.14 5.47 5.67 86.38 0.49 5.96 16 3 N -0.59 -26.32 1.85 -678.02 -1.25 -27.57 16 4 C -0.26 -12.68 9.26 84.03 0.78 -11.90 16 5 H 0.06 3.04 7.89 -2.91 -0.02 3.02 16 6 C -0.03 -1.67 4.85 84.86 0.41 -1.26 16 7 N -0.92 -49.38 10.61 21.65 0.23 -49.15 16 8 Si 0.95 41.67 29.59 68.60 2.03 43.70 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 12 C 0.18 7.90 1.92 45.00 0.09 7.98 16 13 H 0.07 3.46 6.03 -2.39 -0.01 3.45 16 14 C -0.14 -5.58 9.05 71.98 0.65 -4.93 16 15 C 0.12 4.55 4.34 86.38 0.37 4.93 16 16 N -0.70 -25.40 3.99 -463.06 -1.85 -27.25 16 17 C 0.53 18.84 7.38 87.65 0.65 19.49 16 18 O -0.59 -24.42 16.25 -3.04 -0.05 -24.47 16 19 C -0.15 -4.24 6.19 -11.54 -0.07 -4.31 16 20 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 21 C -0.08 -1.95 10.23 30.60 0.31 -1.63 16 22 C -0.22 -5.46 5.05 -52.19 -0.26 -5.72 16 23 C -0.10 -1.91 10.53 30.60 0.32 -1.59 16 24 C -0.13 -3.01 10.16 30.59 0.31 -2.70 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.63 4.99 -2.39 -0.01 1.62 16 28 H 0.03 1.30 8.09 -2.39 -0.02 1.28 16 29 H 0.04 1.59 6.44 -2.39 -0.02 1.58 16 30 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 2.32 7.40 -2.39 -0.02 2.30 16 33 H 0.04 1.60 6.67 -2.39 -0.02 1.59 16 34 H 0.05 1.95 7.05 -2.39 -0.02 1.93 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.41 15.24 7.89 -92.71 -0.73 14.50 16 37 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -58.83 338.43 4.14 -54.69 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.27 Total: 30.34 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 4.76 Total: -0.29 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -2.87 Total: -103.97 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -58.83 4.14 -54.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155469272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.178 kcal (2) G-P(sol) polarization free energy of solvation -58.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds