Wall clock time and date at job start Mon Mar 30 2020 00:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47144 * 2 1 4 4 C 1.36933 * 120.00173 * 275.73553 * 3 2 1 5 5 H 1.07997 * 120.00110 * 33.26409 * 4 3 2 6 6 C 1.38813 * 120.00084 * 213.27178 * 4 3 2 7 7 N 1.31617 * 120.00041 * 17.26854 * 6 4 3 8 8 Si 1.86799 * 119.99822 * 197.27149 * 6 4 3 9 9 H 1.48496 * 109.47563 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47398 * 120.00019 * 8 6 4 11 11 H 1.48503 * 109.47189 * 239.99476 * 8 6 4 12 12 C 1.46502 * 120.00020 * 95.73474 * 3 2 1 13 13 H 1.09000 * 109.47299 * 180.08580 * 12 3 2 14 14 C 1.53003 * 109.47103 * 60.08362 * 12 3 2 15 15 C 1.53004 * 109.47226 * 300.08631 * 12 3 2 16 16 N 1.46497 * 109.46891 * 304.99917 * 15 12 3 17 17 C 1.34775 * 120.00129 * 180.02562 * 16 15 12 18 18 O 1.21282 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00481 * 180.02562 * 17 16 15 20 20 H 1.09004 * 115.55134 * 34.32291 * 19 17 16 21 21 C 1.53000 * 117.51835 * 248.62879 * 19 17 16 22 22 C 1.52994 * 59.99876 * 252.51655 * 21 19 17 23 23 C 1.53001 * 138.58802 * 229.11361 * 22 21 19 24 24 C 1.53006 * 60.02748 * 229.08912 * 23 22 21 25 25 H 1.08992 * 109.47223 * 59.99709 * 1 2 3 26 26 H 1.09004 * 109.47338 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47158 * 299.99745 * 1 2 3 28 28 H 1.08997 * 109.46865 * 240.00046 * 2 1 3 29 29 H 1.09005 * 109.47178 * 120.00055 * 2 1 3 30 30 H 0.97004 * 120.00203 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47094 * 59.99988 * 14 12 3 32 32 H 1.09005 * 109.47265 * 179.97438 * 14 12 3 33 33 H 1.09000 * 109.47221 * 300.00266 * 14 12 3 34 34 H 1.08993 * 109.47015 * 184.99654 * 15 12 3 35 35 H 1.08998 * 109.46648 * 64.99953 * 15 12 3 36 36 H 0.97001 * 119.99936 * 0.02562 * 16 15 12 37 37 H 1.09005 * 117.49797 * 145.02654 * 21 19 17 38 38 H 1.09001 * 117.49796 * 0.02562 * 21 19 17 39 39 H 1.08994 * 117.49374 * 336.58717 * 23 22 21 40 40 H 1.08995 * 117.49917 * 121.59116 * 23 22 21 41 41 H 1.08998 * 117.50084 * 107.50002 * 24 23 22 42 42 H 1.09007 * 117.49864 * 252.52289 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1348 2.0663 -1.1799 5 1 1.4369 1.8811 -1.9830 6 6 3.1500 2.9986 -1.3438 7 7 4.1871 2.9917 -0.5334 8 14 3.0443 4.2632 -2.7146 9 1 1.7886 4.0593 -3.4805 10 1 3.0522 5.6285 -2.1304 11 1 4.2086 4.1070 -3.6231 12 6 2.3820 2.0296 1.2624 13 1 2.7190 3.0471 1.0644 14 6 3.5077 1.2412 1.9348 15 6 1.1630 2.0668 2.1864 16 7 0.0467 2.7174 1.4960 17 6 -1.1385 2.8640 2.1206 18 8 -1.2810 2.4569 3.2541 19 6 -2.2871 3.5327 1.4103 20 1 -2.3426 3.3558 0.3361 21 6 -2.7355 4.9021 1.9247 22 6 -3.6064 3.6689 2.1729 23 6 -5.0692 3.2475 2.0196 24 6 -4.3344 2.9928 3.3373 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.8964 3.6435 -0.6477 31 1 4.3762 1.2146 1.2766 32 1 3.7787 1.7238 2.8739 33 1 3.1707 0.2237 2.1328 34 1 1.4081 2.6268 3.0888 35 1 0.8803 1.0492 2.4558 36 1 0.1606 3.0426 0.5892 37 1 -3.0860 5.6260 1.1890 38 1 -2.1994 5.3198 2.7769 39 1 -5.8214 4.0362 2.0071 40 1 -5.2809 2.3857 1.3867 41 1 -4.6034 3.6138 4.1917 42 1 -4.0625 1.9634 3.5711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155469287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:50 Heat of formation + Delta-G solvation = 38.208266 kcal Electronic energy + Delta-G solvation = -21239.409162 eV Core-core repulsion = 18222.080979 eV Total energy + Delta-G solvation = -3017.328183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.61070 -37.63594 -36.58424 -33.55944 -32.53999 -31.86878 -30.96738 -28.17867 -26.00550 -23.94512 -23.14956 -22.37620 -21.64679 -20.08238 -19.34961 -18.73109 -17.03247 -16.48350 -15.66404 -15.02840 -14.85145 -14.79919 -14.49261 -13.99978 -13.70438 -13.29371 -12.69505 -12.41500 -12.23743 -12.11958 -11.81787 -11.63437 -11.50166 -11.40629 -11.07264 -10.94895 -10.82356 -10.68220 -10.28502 -10.15688 -10.09390 -10.01571 -9.93411 -9.63479 -9.42912 -9.25169 -8.52364 -8.32761 -6.67211 -5.88922 -3.37463 2.90994 3.29704 3.39798 3.40203 3.48659 3.83613 4.04316 4.38375 4.41787 4.86501 4.94305 5.26147 5.35177 5.40538 5.52731 5.59556 5.66443 5.67548 5.73479 5.92294 5.93484 6.04041 6.07083 6.18506 6.21316 6.27474 6.39205 6.49966 6.55714 6.63948 6.69402 6.83853 6.91625 7.12918 7.17025 7.48944 7.58084 7.76832 8.23480 8.42704 8.82097 9.15615 9.77134 10.34433 11.17642 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.005897 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.661977 B = 4747.423455 C = 5328.563556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.262 4.262 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.697 5.697 17 C 0.532 3.468 18 O -0.556 6.556 19 C -0.136 4.136 20 H 0.122 0.878 21 C -0.102 4.102 22 C -0.201 4.201 23 C -0.133 4.133 24 C -0.113 4.113 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.254 0.746 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.411 0.589 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 1.277 3.786 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.022 4.022 16 N -0.347 5.347 17 C 0.318 3.682 18 O -0.435 6.435 19 C -0.157 4.157 20 H 0.140 0.860 21 C -0.140 4.140 22 C -0.202 4.202 23 C -0.169 4.169 24 C -0.150 4.150 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.248 0.752 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.454 1.072 4.567 12.377 hybrid contribution 0.213 0.774 -1.269 1.501 sum -11.241 1.846 3.298 11.860 Atomic orbital electron populations 1.22451 1.00045 0.98955 1.01545 1.20751 0.91674 0.87461 0.98691 1.43882 1.75959 1.08266 1.02273 1.19121 1.08528 1.18135 0.93354 0.91846 1.25151 0.94533 1.01371 0.97814 1.70016 1.07887 1.35881 1.39544 0.86342 0.77599 0.81624 0.81883 1.20208 1.21538 1.21726 1.20496 0.88920 0.99498 0.84191 0.88268 1.22022 1.01139 0.97951 0.99230 1.22145 0.88179 0.96183 0.95739 1.45921 1.10758 1.58905 1.19129 1.19581 0.83200 0.79335 0.86096 1.90633 1.83363 1.50803 1.18697 1.22011 0.92920 1.01241 0.99570 0.85982 1.22630 0.99759 0.89176 1.02393 1.21131 0.90985 1.02748 1.05291 1.22735 0.91232 1.02419 1.00560 1.22556 0.99992 1.01354 0.91102 0.93482 0.94927 0.92927 0.94141 0.94543 0.93616 0.90311 0.94865 0.95174 0.93113 0.92956 0.75225 0.87833 0.88236 0.88608 0.88688 0.88820 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.87 37.16 0.37 -2.74 16 2 C 0.14 2.86 5.67 -4.04 -0.02 2.83 16 3 N -0.58 -13.07 1.85 -165.66 -0.31 -13.38 16 4 C -0.26 -6.47 9.26 -15.06 -0.14 -6.61 16 5 H 0.06 1.58 7.89 -52.49 -0.41 1.17 16 6 C 0.01 0.29 4.85 -17.43 -0.08 0.20 16 7 N -0.89 -23.59 10.60 55.49 0.59 -23.00 16 8 Si 0.90 20.21 29.59 -169.99 -5.03 15.18 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.18 3.79 1.92 -67.93 -0.13 3.66 16 13 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 14 C -0.14 -2.97 9.05 37.16 0.34 -2.63 16 15 C 0.10 2.01 4.34 -4.04 -0.02 2.00 16 16 N -0.70 -12.86 3.99 -60.30 -0.24 -13.10 16 17 C 0.53 9.60 7.38 -10.99 -0.08 9.52 16 18 O -0.56 -11.58 16.25 5.56 0.09 -11.49 16 19 C -0.14 -2.00 6.19 -91.78 -0.57 -2.57 16 20 H 0.12 1.64 8.14 -51.93 -0.42 1.21 16 21 C -0.10 -1.29 10.24 -26.73 -0.27 -1.56 16 22 C -0.20 -2.69 5.06 -154.48 -0.78 -3.47 16 23 C -0.13 -1.42 10.53 -26.73 -0.28 -1.71 16 24 C -0.11 -1.42 10.17 -26.69 -0.27 -1.69 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.99 4.99 -51.92 -0.26 0.73 16 28 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.04 0.72 6.45 -51.93 -0.33 0.38 16 30 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.08 1.84 7.40 -51.93 -0.38 1.45 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 1.05 7.05 -51.93 -0.37 0.69 16 36 H 0.41 7.73 7.90 -40.82 -0.32 7.41 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -27.59 338.44 -8.69 -36.28 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.95 Total: 9.17 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.95 Total: -4.76 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.04 Total: -49.48 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.59 -8.69 -36.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155469287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.487 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds