Wall clock time and date at job start Mon Mar 30 2020 00:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47144 * 2 1 4 4 C 1.36933 * 120.00173 * 275.73553 * 3 2 1 5 5 H 1.07997 * 120.00110 * 33.26409 * 4 3 2 6 6 C 1.38813 * 120.00084 * 213.27178 * 4 3 2 7 7 N 1.31617 * 120.00041 * 17.26854 * 6 4 3 8 8 Si 1.86799 * 119.99822 * 197.27149 * 6 4 3 9 9 H 1.48496 * 109.47563 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47398 * 120.00019 * 8 6 4 11 11 H 1.48503 * 109.47189 * 239.99476 * 8 6 4 12 12 C 1.46502 * 120.00020 * 95.73474 * 3 2 1 13 13 H 1.09000 * 109.47299 * 180.08580 * 12 3 2 14 14 C 1.53003 * 109.47103 * 60.08362 * 12 3 2 15 15 C 1.53004 * 109.47226 * 300.08631 * 12 3 2 16 16 N 1.46497 * 109.46891 * 304.99917 * 15 12 3 17 17 C 1.34775 * 120.00129 * 180.02562 * 16 15 12 18 18 O 1.21282 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00481 * 180.02562 * 17 16 15 20 20 H 1.09004 * 115.55134 * 34.32291 * 19 17 16 21 21 C 1.53000 * 117.51835 * 248.62879 * 19 17 16 22 22 C 1.52994 * 59.99876 * 252.51655 * 21 19 17 23 23 C 1.53001 * 138.58802 * 229.11361 * 22 21 19 24 24 C 1.53006 * 60.02748 * 229.08912 * 23 22 21 25 25 H 1.08992 * 109.47223 * 59.99709 * 1 2 3 26 26 H 1.09004 * 109.47338 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47158 * 299.99745 * 1 2 3 28 28 H 1.08997 * 109.46865 * 240.00046 * 2 1 3 29 29 H 1.09005 * 109.47178 * 120.00055 * 2 1 3 30 30 H 0.97004 * 120.00203 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47094 * 59.99988 * 14 12 3 32 32 H 1.09005 * 109.47265 * 179.97438 * 14 12 3 33 33 H 1.09000 * 109.47221 * 300.00266 * 14 12 3 34 34 H 1.08993 * 109.47015 * 184.99654 * 15 12 3 35 35 H 1.08998 * 109.46648 * 64.99953 * 15 12 3 36 36 H 0.97001 * 119.99936 * 0.02562 * 16 15 12 37 37 H 1.09005 * 117.49797 * 145.02654 * 21 19 17 38 38 H 1.09001 * 117.49796 * 0.02562 * 21 19 17 39 39 H 1.08994 * 117.49374 * 336.58717 * 23 22 21 40 40 H 1.08995 * 117.49917 * 121.59116 * 23 22 21 41 41 H 1.08998 * 117.50084 * 107.50002 * 24 23 22 42 42 H 1.09007 * 117.49864 * 252.52289 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1348 2.0663 -1.1799 5 1 1.4369 1.8811 -1.9830 6 6 3.1500 2.9986 -1.3438 7 7 4.1871 2.9917 -0.5334 8 14 3.0443 4.2632 -2.7146 9 1 1.7886 4.0593 -3.4805 10 1 3.0522 5.6285 -2.1304 11 1 4.2086 4.1070 -3.6231 12 6 2.3820 2.0296 1.2624 13 1 2.7190 3.0471 1.0644 14 6 3.5077 1.2412 1.9348 15 6 1.1630 2.0668 2.1864 16 7 0.0467 2.7174 1.4960 17 6 -1.1385 2.8640 2.1206 18 8 -1.2810 2.4569 3.2541 19 6 -2.2871 3.5327 1.4103 20 1 -2.3426 3.3558 0.3361 21 6 -2.7355 4.9021 1.9247 22 6 -3.6064 3.6689 2.1729 23 6 -5.0692 3.2475 2.0196 24 6 -4.3344 2.9928 3.3373 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.8964 3.6435 -0.6477 31 1 4.3762 1.2146 1.2766 32 1 3.7787 1.7238 2.8739 33 1 3.1707 0.2237 2.1328 34 1 1.4081 2.6268 3.0888 35 1 0.8803 1.0492 2.4558 36 1 0.1606 3.0426 0.5892 37 1 -3.0860 5.6260 1.1890 38 1 -2.1994 5.3198 2.7769 39 1 -5.8214 4.0362 2.0071 40 1 -5.2809 2.3857 1.3867 41 1 -4.6034 3.6138 4.1917 42 1 -4.0625 1.9634 3.5711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155469287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:49 Heat of formation + Delta-G solvation = 24.447898 kcal Electronic energy + Delta-G solvation = -21240.005856 eV Core-core repulsion = 18222.080979 eV Total energy + Delta-G solvation = -3017.924877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96398 -39.00741 -38.04189 -35.17295 -33.75532 -33.53631 -32.57975 -29.93909 -27.52516 -25.79104 -24.45205 -23.27809 -23.25520 -21.31456 -21.02523 -19.98817 -18.74013 -17.90302 -17.14299 -16.54773 -16.41364 -15.90557 -15.81105 -15.52974 -15.25841 -14.81594 -14.33109 -14.00267 -13.81333 -13.52849 -13.39528 -13.19753 -12.81810 -12.70616 -12.60688 -12.55427 -12.40138 -12.33456 -12.01797 -11.86714 -11.36461 -11.17523 -11.15322 -11.05183 -10.90731 -10.65142 -10.43311 -9.87141 -8.52599 -7.81347 -5.31559 1.49265 1.54889 1.58169 1.61960 2.25843 2.55416 2.77742 2.94532 3.33267 3.37091 3.65196 3.84748 3.91495 4.16478 4.27156 4.45153 4.52181 4.55761 4.63987 4.69315 4.76483 4.78078 4.80032 4.82042 4.88113 4.92959 4.97627 5.02976 5.04963 5.05880 5.21273 5.29263 5.31625 5.54113 5.60273 5.69929 5.77301 5.87683 6.50777 6.75949 7.24666 7.37049 7.93044 8.45866 9.22813 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.005897 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.661977 B = 4747.423455 C = 5328.563556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.260 4.260 5 H 0.062 0.938 6 C -0.032 4.032 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.292 1.292 11 H -0.300 1.300 12 C 0.183 3.817 13 H 0.070 0.930 14 C -0.135 4.135 15 C 0.117 3.883 16 N -0.696 5.696 17 C 0.531 3.469 18 O -0.588 6.588 19 C -0.153 4.153 20 H 0.135 0.865 21 C -0.088 4.088 22 C -0.222 4.222 23 C -0.105 4.105 24 C -0.128 4.128 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.042 0.958 30 H 0.248 0.752 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.410 0.590 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.634 1.714 3.320 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.229 4.229 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.219 1.219 11 H -0.228 1.228 12 C 0.076 3.924 13 H 0.088 0.912 14 C -0.195 4.195 15 C -0.009 4.009 16 N -0.346 5.346 17 C 0.319 3.681 18 O -0.469 6.469 19 C -0.174 4.174 20 H 0.153 0.847 21 C -0.125 4.125 22 C -0.222 4.222 23 C -0.141 4.141 24 C -0.165 4.165 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.246 0.754 37 H 0.150 0.850 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.556 1.498 4.093 14.239 hybrid contribution 0.852 0.570 -1.085 1.493 sum -12.704 2.068 3.008 13.218 Atomic orbital electron populations 1.22255 0.98110 1.00198 1.00873 1.20831 0.93026 0.86280 0.98550 1.43994 1.76106 1.09117 1.02014 1.19277 1.07904 1.17973 0.93875 0.92076 1.25718 0.94467 1.03004 0.99745 1.70148 1.08421 1.36373 1.41045 0.85446 0.77313 0.79441 0.79579 1.19150 1.21896 1.22804 1.20336 0.89842 0.97939 0.84320 0.91174 1.21888 0.99656 0.98749 0.99160 1.21853 0.87809 0.96076 0.95149 1.45901 1.10836 1.58884 1.18953 1.20166 0.83581 0.78610 0.85744 1.90612 1.83902 1.52200 1.20207 1.21979 0.92427 1.03026 0.99974 0.84735 1.22724 0.98620 0.88722 1.02401 1.21407 0.91874 1.02817 1.06141 1.22867 0.89850 1.02948 0.98450 1.22609 1.01028 1.00518 0.92315 0.93935 0.92727 0.93670 0.94989 0.93947 0.94266 0.93252 0.93265 0.93987 0.93211 0.93341 0.75358 0.84985 0.89106 0.86020 0.88009 0.87753 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 9.87 71.98 0.71 -4.70 16 2 C 0.14 5.52 5.67 86.38 0.49 6.01 16 3 N -0.59 -26.41 1.85 -678.02 -1.25 -27.66 16 4 C -0.26 -12.79 9.26 84.03 0.78 -12.02 16 5 H 0.06 3.01 7.89 -2.91 -0.02 2.99 16 6 C -0.03 -1.62 4.85 84.86 0.41 -1.21 16 7 N -0.92 -49.26 10.60 21.65 0.23 -49.03 16 8 Si 0.95 41.63 29.59 68.60 2.03 43.65 16 9 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 12 C 0.18 7.90 1.92 44.99 0.09 7.99 16 13 H 0.07 3.49 6.04 -2.39 -0.01 3.47 16 14 C -0.14 -5.58 9.05 71.98 0.65 -4.93 16 15 C 0.12 4.55 4.34 86.38 0.37 4.93 16 16 N -0.70 -25.44 3.99 -463.08 -1.85 -27.28 16 17 C 0.53 18.87 7.38 87.66 0.65 19.52 16 18 O -0.59 -24.44 16.25 -3.03 -0.05 -24.49 16 19 C -0.15 -4.25 6.19 -11.54 -0.07 -4.32 16 20 H 0.13 3.34 8.14 -2.38 -0.02 3.32 16 21 C -0.09 -2.00 10.24 30.59 0.31 -1.69 16 22 C -0.22 -5.46 5.06 -52.16 -0.26 -5.72 16 23 C -0.10 -1.92 10.53 30.60 0.32 -1.60 16 24 C -0.13 -3.01 10.17 30.62 0.31 -2.70 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.64 4.99 -2.38 -0.01 1.63 16 28 H 0.03 1.32 8.09 -2.39 -0.02 1.30 16 29 H 0.04 1.63 6.45 -2.38 -0.02 1.61 16 30 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16 31 H 0.05 2.33 7.40 -2.39 -0.02 2.31 16 32 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.04 1.59 6.67 -2.39 -0.02 1.57 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.93 7.05 -2.39 -0.02 1.91 16 36 H 0.41 15.26 7.90 -92.71 -0.73 14.53 16 37 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -58.80 338.44 4.14 -54.66 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.27 Total: 30.57 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.76 Total: -0.43 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -2.87 Total: -103.97 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -58.80 4.14 -54.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155469287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.109 kcal (2) G-P(sol) polarization free energy of solvation -58.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds