Wall clock time and date at job start Mon Mar 30 2020 01:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 119.99950 * 2 1 4 4 H 1.08002 * 119.99713 * 202.46146 * 3 2 1 5 5 C 1.38810 * 120.00368 * 22.46465 * 3 2 1 6 6 N 1.31627 * 119.99716 * 10.48225 * 5 3 2 7 7 Si 1.86797 * 120.00354 * 190.48408 * 5 3 2 8 8 H 1.48500 * 109.46872 * 94.98254 * 7 5 3 9 9 H 1.48495 * 109.47367 * 214.98433 * 7 5 3 10 10 H 1.48501 * 109.46901 * 334.98505 * 7 5 3 11 11 C 1.46504 * 119.99895 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46816 * 264.59148 * 11 2 1 13 13 H 1.08997 * 109.70873 * 298.64229 * 12 11 2 14 14 C 1.53628 * 109.66796 * 59.23380 * 12 11 2 15 15 C 1.53038 * 109.24470 * 174.54586 * 14 12 11 16 16 C 1.53046 * 109.53865 * 298.51281 * 15 14 12 17 17 C 1.53195 * 109.31046 * 61.36607 * 16 15 14 18 18 N 1.46925 * 108.77355 * 305.36034 * 17 16 15 19 19 C 1.34774 * 120.63227 * 233.58265 * 18 17 16 20 20 O 1.21279 * 120.00292 * 185.20476 * 19 18 17 21 21 C 1.50695 * 119.99831 * 5.20786 * 19 18 17 22 22 C 1.53001 * 117.49879 * 109.50040 * 21 19 18 23 23 C 1.53005 * 117.49860 * 178.15775 * 21 19 18 24 24 H 1.09003 * 109.47117 * 274.37067 * 1 2 3 25 25 H 1.09007 * 109.47072 * 34.36758 * 1 2 3 26 26 H 1.08999 * 109.47411 * 154.36976 * 1 2 3 27 27 H 0.97001 * 119.99757 * 180.02562 * 6 5 3 28 28 H 1.08994 * 109.47122 * 144.59193 * 11 2 1 29 29 H 1.08994 * 109.47272 * 24.58968 * 11 2 1 30 30 H 1.09004 * 109.63104 * 54.55888 * 14 12 11 31 31 H 1.08991 * 109.43461 * 294.42288 * 14 12 11 32 32 H 1.08994 * 109.45927 * 178.49595 * 15 14 12 33 33 H 1.09001 * 109.46084 * 58.53556 * 15 14 12 34 34 H 1.08999 * 109.49701 * 301.41445 * 16 15 14 35 35 H 1.08999 * 109.49276 * 181.31206 * 16 15 14 36 36 H 1.09001 * 109.58499 * 185.57422 * 17 16 15 37 37 H 1.08993 * 109.58636 * 65.15040 * 17 16 15 38 38 H 1.08998 * 115.55243 * 323.82910 * 21 19 18 39 39 H 1.09006 * 117.50290 * 215.00465 * 22 21 19 40 40 H 1.09002 * 117.50045 * 0.02562 * 22 21 19 41 41 H 1.08993 * 117.49879 * 359.97438 * 23 21 19 42 42 H 1.09003 * 117.49610 * 144.97726 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1682 1.2213 -0.3574 5 6 1.5347 2.3425 0.4593 6 7 0.3778 2.2695 1.0829 7 14 2.3487 4.0024 0.1925 8 1 1.8063 4.6272 -1.0407 9 1 2.0719 4.8823 1.3562 10 1 3.8152 3.8172 0.0497 11 6 2.1975 -1.2688 -0.0006 12 6 2.5702 -1.6430 1.4353 13 1 3.2177 -0.8754 1.8590 14 6 1.2957 -1.7726 2.2833 15 6 1.6676 -2.2786 3.6789 16 6 2.3137 -3.6614 3.5666 17 6 3.5948 -3.5559 2.7333 18 7 3.2690 -2.9355 1.4419 19 6 3.6100 -3.5376 0.2853 20 8 3.4208 -2.9728 -0.7711 21 6 4.2262 -4.9126 0.3048 22 6 3.3751 -6.0755 -0.2095 23 6 4.5513 -5.5603 -1.0427 24 1 -0.3633 0.0783 1.0247 25 1 -0.3633 0.8483 -0.5802 26 1 -0.3634 -0.9265 -0.4445 27 1 -0.0522 3.0777 1.4036 28 1 3.1045 -1.1644 -0.5959 29 1 1.5699 -2.0504 -0.4285 30 1 0.6117 -2.4778 1.8110 31 1 0.8144 -0.7981 2.3659 32 1 0.7690 -2.3463 4.2920 33 1 2.3708 -1.5856 4.1410 34 1 1.6201 -4.3487 3.0823 35 1 2.5571 -4.0311 4.5627 36 1 4.0055 -4.5518 2.5669 37 1 4.3240 -2.9411 3.2605 38 1 4.9026 -5.1130 1.1357 39 1 3.4916 -7.0409 0.2831 40 1 2.3697 -5.8459 -0.5623 41 1 4.3191 -4.9919 -1.9433 42 1 5.4419 -6.1864 -1.0984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157416412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:20 Heat of formation + Delta-G solvation = 27.151485 kcal Electronic energy + Delta-G solvation = -21701.041813 eV Core-core repulsion = 18683.234172 eV Total energy + Delta-G solvation = -3017.807641 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27204 -37.57142 -35.96510 -35.26256 -32.48347 -31.85392 -29.96377 -26.79057 -25.69479 -24.65400 -23.79317 -22.47446 -21.98990 -20.36206 -20.23021 -18.43349 -17.20996 -16.37650 -15.73977 -15.06783 -14.72185 -14.55034 -14.14078 -14.11343 -13.82233 -13.17861 -13.04878 -12.71398 -12.60457 -12.31956 -12.22361 -11.60201 -11.46841 -11.01559 -10.90382 -10.82828 -10.62660 -10.58665 -10.53829 -10.44917 -10.31582 -10.15667 -10.01151 -9.77875 -9.66951 -8.75598 -8.37133 -8.08161 -6.60363 -5.61244 -3.05732 2.78512 3.27867 3.44819 3.51065 3.52884 3.89909 4.58844 4.62030 4.73757 4.87048 4.94922 5.08111 5.12324 5.21688 5.50965 5.51526 5.54752 5.64174 5.66701 5.69701 5.82227 5.91397 6.02196 6.05993 6.11079 6.12569 6.27329 6.31108 6.58510 6.63165 6.76152 6.90234 7.04723 7.10391 7.44923 7.53056 7.80991 7.88102 7.93181 8.49477 8.64412 9.37563 10.02274 10.51510 11.43299 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.005987 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.716484 B = 4675.757843 C = 5252.262082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.602 5.602 3 C -0.244 4.244 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.912 5.912 7 Si 0.902 3.098 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.164 3.836 12 C 0.124 3.876 13 H 0.070 0.930 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.132 4.132 17 C 0.107 3.893 18 N -0.602 5.602 19 C 0.537 3.463 20 O -0.527 6.527 21 C -0.193 4.193 22 C -0.154 4.154 23 C -0.150 4.150 24 H 0.029 0.971 25 H 0.042 0.958 26 H -0.008 1.008 27 H 0.250 0.750 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -16.672 4.419 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.374 4.374 4 H 0.084 0.916 5 C -0.198 4.198 6 N -0.558 5.558 7 Si 0.733 3.267 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.037 3.963 12 C 0.020 3.980 13 H 0.088 0.912 14 C -0.159 4.159 15 C -0.158 4.158 16 C -0.170 4.170 17 C -0.017 4.017 18 N -0.335 5.335 19 C 0.324 3.676 20 O -0.404 6.404 21 C -0.215 4.215 22 C -0.192 4.192 23 C -0.188 4.188 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.011 0.989 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.319 -16.206 3.904 17.497 hybrid contribution 0.395 0.961 0.381 1.106 sum 5.715 -15.245 4.285 16.836 Atomic orbital electron populations 1.20838 0.82992 0.95260 0.99023 1.44241 1.01830 1.01160 1.85305 1.19263 0.97864 0.85643 1.34667 0.91565 1.24991 0.97688 0.98291 0.98862 1.70062 1.17469 1.26748 1.41543 0.86260 0.78877 0.84440 0.77154 1.21680 1.21904 1.20574 1.21497 0.96948 0.87096 0.90774 1.22592 0.92134 0.81382 1.01913 0.91189 1.21990 0.97442 1.02855 0.93609 1.21541 1.00221 0.95697 0.98298 1.21901 0.97250 0.98473 0.99371 1.21715 0.97079 0.98152 0.84707 1.48363 1.57625 1.22592 1.04957 1.19588 0.78228 0.85914 0.83855 1.90762 1.54353 1.64243 1.31019 1.22305 1.05421 0.93122 1.00621 1.22895 0.96927 0.96189 1.03182 1.22935 0.99188 1.02114 0.94533 0.95331 0.93919 0.98933 0.93992 0.91067 0.93914 0.93032 0.88620 0.92315 0.92102 0.91809 0.91480 0.90219 0.91748 0.86307 0.88213 0.88342 0.87370 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.22 8.14 59.85 0.49 4.71 16 2 N -0.60 -15.94 2.55 -181.12 -0.46 -16.40 16 3 C -0.24 -6.98 9.67 -15.06 -0.15 -7.13 16 4 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 5 C 0.00 -0.03 5.15 -17.43 -0.09 -0.12 16 6 N -0.91 -26.79 10.55 55.49 0.59 -26.21 16 7 Si 0.90 22.52 29.57 -169.99 -5.03 17.49 16 8 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.16 3.82 3.64 -4.04 -0.01 3.81 16 12 C 0.12 2.47 3.20 -67.37 -0.22 2.26 16 13 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 14 C -0.12 -2.25 4.68 -26.39 -0.12 -2.37 16 15 C -0.12 -1.75 5.88 -26.69 -0.16 -1.91 16 16 C -0.13 -1.54 6.08 -26.61 -0.16 -1.70 16 17 C 0.11 1.29 6.33 -3.71 -0.02 1.26 16 18 N -0.60 -9.75 2.97 -164.97 -0.49 -10.24 16 19 C 0.54 8.90 7.32 -10.99 -0.08 8.82 16 20 O -0.53 -10.79 11.80 5.56 0.07 -10.73 16 21 C -0.19 -2.30 5.05 -91.77 -0.46 -2.76 16 22 C -0.15 -1.56 10.24 -26.69 -0.27 -1.84 16 23 C -0.15 -1.63 10.05 -26.69 -0.27 -1.90 16 24 H 0.03 0.76 6.15 -51.93 -0.32 0.44 16 25 H 0.04 1.19 7.18 -51.92 -0.37 0.81 16 26 H -0.01 -0.19 7.80 -51.93 -0.40 -0.59 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.07 1.80 6.19 -51.93 -0.32 1.48 16 29 H 0.04 1.01 6.88 -51.93 -0.36 0.65 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 2.14 6.26 -51.93 -0.33 1.82 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.75 5.58 -51.93 -0.29 0.46 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.12 1.13 6.69 -51.93 -0.35 0.78 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.11 1.38 7.67 -51.93 -0.40 0.99 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -31.44 322.14 -8.91 -40.36 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.91 Total: -0.27 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.53 Total: 1.13 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.37 Total: -52.84 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.44 -8.91 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157416412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.507 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds