Wall clock time and date at job start Mon Mar 30 2020 01:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 119.99950 * 2 1 4 4 H 1.08002 * 119.99713 * 202.46146 * 3 2 1 5 5 C 1.38810 * 120.00368 * 22.46465 * 3 2 1 6 6 N 1.31627 * 119.99716 * 10.48225 * 5 3 2 7 7 Si 1.86797 * 120.00354 * 190.48408 * 5 3 2 8 8 H 1.48500 * 109.46872 * 94.98254 * 7 5 3 9 9 H 1.48495 * 109.47367 * 214.98433 * 7 5 3 10 10 H 1.48501 * 109.46901 * 334.98505 * 7 5 3 11 11 C 1.46504 * 119.99895 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46816 * 264.59148 * 11 2 1 13 13 H 1.08997 * 109.70873 * 298.64229 * 12 11 2 14 14 C 1.53628 * 109.66796 * 59.23380 * 12 11 2 15 15 C 1.53038 * 109.24470 * 174.54586 * 14 12 11 16 16 C 1.53046 * 109.53865 * 298.51281 * 15 14 12 17 17 C 1.53195 * 109.31046 * 61.36607 * 16 15 14 18 18 N 1.46925 * 108.77355 * 305.36034 * 17 16 15 19 19 C 1.34774 * 120.63227 * 233.58265 * 18 17 16 20 20 O 1.21279 * 120.00292 * 185.20476 * 19 18 17 21 21 C 1.50695 * 119.99831 * 5.20786 * 19 18 17 22 22 C 1.53001 * 117.49879 * 109.50040 * 21 19 18 23 23 C 1.53005 * 117.49860 * 178.15775 * 21 19 18 24 24 H 1.09003 * 109.47117 * 274.37067 * 1 2 3 25 25 H 1.09007 * 109.47072 * 34.36758 * 1 2 3 26 26 H 1.08999 * 109.47411 * 154.36976 * 1 2 3 27 27 H 0.97001 * 119.99757 * 180.02562 * 6 5 3 28 28 H 1.08994 * 109.47122 * 144.59193 * 11 2 1 29 29 H 1.08994 * 109.47272 * 24.58968 * 11 2 1 30 30 H 1.09004 * 109.63104 * 54.55888 * 14 12 11 31 31 H 1.08991 * 109.43461 * 294.42288 * 14 12 11 32 32 H 1.08994 * 109.45927 * 178.49595 * 15 14 12 33 33 H 1.09001 * 109.46084 * 58.53556 * 15 14 12 34 34 H 1.08999 * 109.49701 * 301.41445 * 16 15 14 35 35 H 1.08999 * 109.49276 * 181.31206 * 16 15 14 36 36 H 1.09001 * 109.58499 * 185.57422 * 17 16 15 37 37 H 1.08993 * 109.58636 * 65.15040 * 17 16 15 38 38 H 1.08998 * 115.55243 * 323.82910 * 21 19 18 39 39 H 1.09006 * 117.50290 * 215.00465 * 22 21 19 40 40 H 1.09002 * 117.50045 * 0.02562 * 22 21 19 41 41 H 1.08993 * 117.49879 * 359.97438 * 23 21 19 42 42 H 1.09003 * 117.49610 * 144.97726 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1682 1.2213 -0.3574 5 6 1.5347 2.3425 0.4593 6 7 0.3778 2.2695 1.0829 7 14 2.3487 4.0024 0.1925 8 1 1.8063 4.6272 -1.0407 9 1 2.0719 4.8823 1.3562 10 1 3.8152 3.8172 0.0497 11 6 2.1975 -1.2688 -0.0006 12 6 2.5702 -1.6430 1.4353 13 1 3.2177 -0.8754 1.8590 14 6 1.2957 -1.7726 2.2833 15 6 1.6676 -2.2786 3.6789 16 6 2.3137 -3.6614 3.5666 17 6 3.5948 -3.5559 2.7333 18 7 3.2690 -2.9355 1.4419 19 6 3.6100 -3.5376 0.2853 20 8 3.4208 -2.9728 -0.7711 21 6 4.2262 -4.9126 0.3048 22 6 3.3751 -6.0755 -0.2095 23 6 4.5513 -5.5603 -1.0427 24 1 -0.3633 0.0783 1.0247 25 1 -0.3633 0.8483 -0.5802 26 1 -0.3634 -0.9265 -0.4445 27 1 -0.0522 3.0777 1.4036 28 1 3.1045 -1.1644 -0.5959 29 1 1.5699 -2.0504 -0.4285 30 1 0.6117 -2.4778 1.8110 31 1 0.8144 -0.7981 2.3659 32 1 0.7690 -2.3463 4.2920 33 1 2.3708 -1.5856 4.1410 34 1 1.6201 -4.3487 3.0823 35 1 2.5571 -4.0311 4.5627 36 1 4.0055 -4.5518 2.5669 37 1 4.3240 -2.9411 3.2605 38 1 4.9026 -5.1130 1.1357 39 1 3.4916 -7.0409 0.2831 40 1 2.3697 -5.8459 -0.5623 41 1 4.3191 -4.9919 -1.9433 42 1 5.4419 -6.1864 -1.0984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157416412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:19 Heat of formation + Delta-G solvation = 8.496857 kcal Electronic energy + Delta-G solvation = -21701.850739 eV Core-core repulsion = 18683.234172 eV Total energy + Delta-G solvation = -3018.616566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59238 -38.84468 -37.35279 -36.89169 -33.81129 -33.70155 -31.71762 -28.47321 -27.72827 -26.16847 -24.94274 -23.61802 -23.27376 -22.14154 -21.47570 -19.62459 -18.88742 -18.08670 -17.12926 -16.78907 -16.13886 -15.79152 -15.58003 -15.42602 -15.31519 -14.85770 -14.55013 -14.33300 -14.12230 -13.84816 -13.42707 -13.24092 -12.82889 -12.65371 -12.55254 -12.42179 -12.38607 -12.11308 -12.02049 -11.85959 -11.73239 -11.58842 -11.44963 -11.36754 -11.29048 -10.67627 -10.14485 -9.47644 -8.76157 -7.82223 -5.30591 1.43290 1.44848 1.54220 1.57996 2.02723 2.50952 2.98307 3.29217 3.57135 3.76827 3.89046 3.95348 3.97275 4.03771 4.07186 4.17133 4.24516 4.39583 4.53913 4.61367 4.68864 4.78450 4.79115 4.85696 4.94114 5.02684 5.04726 5.11967 5.13744 5.20026 5.25889 5.28853 5.29858 5.37098 5.47766 5.60218 5.70534 5.78463 6.31703 6.59422 7.15042 7.30771 7.88169 8.32854 9.20545 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.005987 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.716484 B = 4675.757843 C = 5252.262082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.617 5.617 3 C -0.262 4.262 4 H 0.057 0.943 5 C -0.047 4.047 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.287 1.287 9 H -0.288 1.288 10 H -0.273 1.273 11 C 0.177 3.823 12 C 0.137 3.863 13 H 0.042 0.958 14 C -0.110 4.110 15 C -0.117 4.117 16 C -0.123 4.123 17 C 0.100 3.900 18 N -0.603 5.603 19 C 0.524 3.476 20 O -0.579 6.579 21 C -0.197 4.197 22 C -0.136 4.136 23 C -0.154 4.154 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.249 0.751 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.155 0.845 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.986 -19.234 6.127 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.341 5.341 3 C -0.392 4.392 4 H 0.075 0.925 5 C -0.242 4.242 6 N -0.581 5.581 7 Si 0.796 3.204 8 H -0.214 1.214 9 H -0.214 1.214 10 H -0.198 1.198 11 C 0.051 3.949 12 C 0.031 3.969 13 H 0.060 0.940 14 C -0.148 4.148 15 C -0.154 4.154 16 C -0.161 4.161 17 C -0.021 4.021 18 N -0.335 5.335 19 C 0.314 3.686 20 O -0.460 6.460 21 C -0.217 4.217 22 C -0.174 4.174 23 C -0.191 4.191 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.787 -18.816 5.641 20.783 hybrid contribution -0.051 1.715 -0.209 1.728 sum 6.736 -17.102 5.432 19.167 Atomic orbital electron populations 1.20566 0.82916 0.94930 0.97865 1.44401 1.02097 1.01795 1.85828 1.19413 0.97791 0.86936 1.35083 0.92494 1.25708 0.98369 1.01426 0.98657 1.70213 1.18479 1.27380 1.42008 0.85247 0.78230 0.80020 0.76927 1.21434 1.21442 1.19813 1.21288 0.95215 0.85578 0.92807 1.21937 0.92758 0.83158 0.99071 0.93967 1.21783 0.96165 1.00544 0.96314 1.21521 1.01060 0.97656 0.95187 1.21878 0.96627 0.96111 1.01438 1.22099 0.97727 0.99884 0.82406 1.48386 1.56963 1.21111 1.07073 1.20553 0.77484 0.87611 0.82961 1.90737 1.56478 1.65923 1.32839 1.22300 1.06647 0.90244 1.02544 1.23015 0.95545 0.96776 1.02036 1.23011 1.01059 1.02113 0.92911 0.96583 0.96577 0.97001 0.94198 0.93540 0.94685 0.93349 0.93095 0.91093 0.92589 0.91483 0.87647 0.86317 0.91022 0.82737 0.84294 0.90292 0.90435 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.86 8.14 127.77 1.04 10.90 16 2 N -0.62 -34.37 2.55 -726.94 -1.85 -36.22 16 3 C -0.26 -15.62 9.67 84.03 0.81 -14.81 16 4 H 0.06 3.43 7.85 -2.91 -0.02 3.40 16 5 C -0.05 -2.73 5.15 84.86 0.44 -2.29 16 6 N -0.93 -56.57 10.55 21.65 0.23 -56.35 16 7 Si 0.97 47.27 29.57 68.60 2.03 49.29 16 8 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 9 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 11 C 0.18 8.72 3.64 86.38 0.31 9.03 16 12 C 0.14 5.63 3.20 45.12 0.14 5.77 16 13 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 14 C -0.11 -4.18 4.68 30.82 0.14 -4.04 16 15 C -0.12 -3.23 5.88 30.62 0.18 -3.05 16 16 C -0.12 -2.38 6.08 30.67 0.19 -2.20 16 17 C 0.10 2.05 6.33 86.36 0.55 2.60 16 18 N -0.60 -19.04 2.97 -794.22 -2.36 -21.39 16 19 C 0.52 17.13 7.32 87.66 0.64 17.77 16 20 O -0.58 -24.76 11.80 -3.03 -0.04 -24.79 16 21 C -0.20 -4.06 5.05 -11.54 -0.06 -4.12 16 22 C -0.14 -2.29 10.24 30.62 0.31 -1.98 16 23 C -0.15 -2.97 10.05 30.62 0.31 -2.66 16 24 H 0.02 0.90 6.15 -2.39 -0.01 0.89 16 25 H 0.02 0.91 7.18 -2.38 -0.02 0.90 16 26 H 0.01 0.57 7.80 -2.39 -0.02 0.55 16 27 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.05 2.52 6.19 -2.39 -0.01 2.50 16 29 H 0.03 1.74 6.88 -2.39 -0.02 1.73 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.05 2.40 6.26 -2.39 -0.01 2.38 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 1.56 5.58 -2.39 -0.01 1.55 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.16 2.09 6.69 -2.39 -0.02 2.08 16 39 H 0.14 1.31 8.14 -2.38 -0.02 1.30 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 2.00 7.67 -2.39 -0.02 1.98 16 42 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -73.57 322.14 4.01 -69.55 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.99 Total: 8.98 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 5.01 Total: 10.93 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.98 Total: -113.96 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.04 Total: -24.79 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -73.57 4.01 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157416412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.049 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds