Wall clock time and date at job start Mon Mar 30 2020 00:59:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 O 1.21283 * 119.99489 * 2 1
4 4 N 1.34771 * 120.00455 * 180.02562 * 2 1 3
5 5 C 1.47026 * 125.64590 * 0.03478 * 4 2 1
6 6 C 1.54325 * 107.27103 * 181.02780 * 5 4 2
7 7 C 1.55156 * 102.94240 * 22.19415 * 6 5 4
8 8 H 1.08996 * 111.03796 * 82.58729 * 7 6 5
9 9 N 1.46900 * 111.00280 * 206.42432 * 7 6 5
10 10 C 1.46905 * 110.99503 * 198.64930 * 9 7 6
11 11 H 1.08993 * 109.35692 * 35.17924 * 10 9 7
12 12 C 1.52966 * 109.40824 * 155.00077 * 10 9 7
13 13 C 1.53234 * 109.40173 * 183.70466 * 12 10 9
14 14 C 1.51270 * 108.53514 * 305.37116 * 13 12 10
15 15 C 1.37877 * 120.85136 * 231.36949 * 14 13 12
16 16 N 1.31513 * 120.00176 * 179.97438 * 15 14 13
17 17 Si 1.86794 * 119.99788 * 359.97438 * 15 14 13
18 18 H 1.48500 * 109.47205 * 90.00170 * 17 15 14
19 19 H 1.48502 * 109.47093 * 210.00007 * 17 15 14
20 20 H 1.48506 * 109.47319 * 330.00062 * 17 15 14
21 21 C 1.51275 * 118.29956 * 51.35008 * 14 13 12
22 22 C 1.52955 * 109.41493 * 275.35285 * 10 9 7
23 23 C 1.47421 * 125.65018 * 179.97438 * 4 2 1
24 24 H 1.09000 * 109.46498 * 180.02562 * 1 2 3
25 25 H 1.08994 * 109.47001 * 300.00095 * 1 2 3
26 26 H 1.08998 * 109.47097 * 60.00522 * 1 2 3
27 27 H 1.08992 * 109.88601 * 300.44722 * 5 4 2
28 28 H 1.09004 * 109.87989 * 61.61299 * 5 4 2
29 29 H 1.09000 * 110.71797 * 263.83317 * 6 5 4
30 30 H 1.08998 * 110.72038 * 140.55993 * 6 5 4
31 31 H 1.00901 * 110.99999 * 74.70024 * 9 7 6
32 32 H 1.08997 * 109.47972 * 303.68150 * 12 10 9
33 33 H 1.08996 * 109.48230 * 63.72721 * 12 10 9
34 34 H 1.09000 * 109.62527 * 65.08768 * 13 12 10
35 35 H 1.08991 * 109.62384 * 185.66299 * 13 12 10
36 36 H 0.96996 * 119.99926 * 179.97438 * 16 15 14
37 37 H 1.09000 * 109.62450 * 188.93380 * 21 14 13
38 38 H 1.09001 * 109.78500 * 68.45824 * 21 14 13
39 39 H 1.09007 * 109.48467 * 296.27476 * 22 10 9
40 40 H 1.08998 * 109.48166 * 56.31812 * 22 10 9
41 41 H 1.08996 * 110.36456 * 37.07062 * 23 4 2
42 42 H 1.08994 * 110.36936 * 274.73864 * 23 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 8 2.1134 1.0504 0.0000
4 7 2.1810 -1.1671 -0.0005
5 6 1.5748 -2.5066 -0.0018
6 6 2.7282 -3.5315 0.0244
7 6 3.9082 -2.7118 0.6102
8 1 3.8592 -2.6784 1.6985
9 7 5.1985 -3.2511 0.1603
10 6 6.2921 -2.7910 1.0266
11 1 5.9339 -2.7196 2.0535
12 6 7.4483 -3.7902 0.9596
13 6 8.5506 -3.3592 1.9329
14 6 8.9407 -1.9323 1.6163
15 6 10.2615 -1.5865 1.4242
16 7 10.5818 -0.3409 1.1493
17 14 11.5959 -2.8870 1.5546
18 1 11.8211 -3.5006 0.2212
19 1 12.8549 -2.2586 2.0293
20 1 11.1727 -3.9358 2.5171
21 6 7.8445 -0.8947 1.5154
22 6 6.7679 -1.4151 0.5573
23 6 3.6481 -1.3121 -0.0011
24 1 -0.3632 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8899
26 1 -0.3633 0.5137 -0.8900
27 1 0.9483 -2.6309 0.8813
28 1 0.9785 -2.6427 -0.9041
29 1 2.9608 -3.8762 -0.9831
30 1 2.4827 -4.3719 0.6736
31 1 5.3748 -3.0101 -0.8035
32 1 7.0883 -4.7817 1.2341
33 1 7.8482 -3.8161 -0.0540
34 1 8.1795 -3.4189 2.9560
35 1 9.4170 -4.0100 1.8162
36 1 11.5110 -0.0976 1.0145
37 1 8.2574 0.0377 1.1305
38 1 7.4073 -0.7231 2.4990
39 1 7.1839 -1.4973 -0.4469
40 1 5.9256 -0.7234 0.5467
41 1 4.1060 -0.5382 0.6148
42 1 4.0335 -1.2652 -1.0195
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169503151.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:59:47
Heat of formation + Delta-G solvation = -47.890788 kcal
Electronic energy + Delta-G solvation = -20895.503805 eV
Core-core repulsion = 17874.442087 eV
Total energy + Delta-G solvation = -3021.061718 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.15108 -38.22591 -36.76890 -34.00103 -32.00005 -30.59094 -30.03856 -29.43261
-27.93014 -25.96626 -23.39240 -21.60567 -21.40035 -20.94036 -19.35591 -19.23071
-17.19804 -16.49701 -16.21115 -15.47915 -14.87559 -14.61909 -14.33005 -14.04773
-13.34014 -13.27677 -12.92197 -12.83130 -12.77816 -12.67988 -12.24279 -12.13055
-12.03890 -11.90926 -11.71607 -11.12989 -10.88498 -10.80594 -10.73350 -10.59949
-10.02752 -9.96836 -9.90268 -9.49053 -9.00744 -8.74683 -8.70827 -8.44579
-7.90563 -6.07045 -3.97749 2.54206 2.89224 3.28593 3.37304 3.38940
4.23411 4.40628 4.43040 4.60025 4.80358 4.93109 5.00100 5.13712
5.19510 5.20030 5.26536 5.39593 5.57104 5.71221 5.72396 5.77939
5.88250 6.02308 6.07222 6.13941 6.25888 6.54574 6.67707 6.76278
6.78478 7.00738 7.05174 7.12934 7.41992 7.44512 7.54640 7.63251
7.71598 7.80253 7.88795 8.07709 8.42098 9.00508 9.57646 11.02677
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.033675 B = 0.004375 C = 0.003956
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 831.284028 B = 6398.568923 C = 7076.523514
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.521 3.479
3 O -0.546 6.546
4 N -0.619 5.619
5 C 0.100 3.900
6 C -0.122 4.122
7 C 0.080 3.920
8 H 0.092 0.908
9 N -0.675 5.675
10 C 0.097 3.903
11 H 0.066 0.934
12 C -0.092 4.092
13 C -0.016 4.016
14 C -0.487 4.487
15 C 0.074 3.926
16 N -0.891 5.891
17 Si 0.889 3.111
18 H -0.279 1.279
19 H -0.291 1.291
20 H -0.267 1.267
21 C 0.013 3.987
22 C -0.139 4.139
23 C 0.074 3.926
24 H 0.075 0.925
25 H 0.093 0.907
26 H 0.093 0.907
27 H 0.069 0.931
28 H 0.068 0.932
29 H 0.080 0.920
30 H 0.085 0.915
31 H 0.339 0.661
32 H 0.038 0.962
33 H 0.049 0.951
34 H 0.015 0.985
35 H 0.030 0.970
36 H 0.263 0.737
37 H 0.055 0.945
38 H 0.001 0.999
39 H 0.050 0.950
40 H 0.031 0.969
41 H 0.083 0.917
42 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.687 -6.470 -2.892 19.986
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.311 3.689
3 O -0.423 6.423
4 N -0.354 5.354
5 C -0.024 4.024
6 C -0.161 4.161
7 C -0.032 4.032
8 H 0.110 0.890
9 N -0.303 5.303
10 C -0.011 4.011
11 H 0.084 0.916
12 C -0.131 4.131
13 C -0.054 4.054
14 C -0.506 4.506
15 C -0.128 4.128
16 N -0.529 5.529
17 Si 0.717 3.283
18 H -0.205 1.205
19 H -0.217 1.217
20 H -0.192 1.192
21 C -0.025 4.025
22 C -0.178 4.178
23 C -0.050 4.050
24 H 0.094 0.906
25 H 0.112 0.888
26 H 0.111 0.889
27 H 0.087 0.913
28 H 0.086 0.914
29 H 0.099 0.901
30 H 0.104 0.896
31 H 0.158 0.842
32 H 0.057 0.943
33 H 0.068 0.932
34 H 0.034 0.966
35 H 0.048 0.952
36 H 0.073 0.927
37 H 0.073 0.927
38 H 0.020 0.980
39 H 0.069 0.931
40 H 0.050 0.950
41 H 0.102 0.898
42 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -18.328 -6.324 -2.603 19.563
hybrid contribution 0.838 0.323 -0.354 0.965
sum -17.491 -6.001 -2.956 18.726
Atomic orbital electron populations
1.21865 0.91608 1.04178 1.05142 1.20527 0.90319 0.82218 0.75885
1.90755 1.70711 1.30694 1.50180 1.48585 1.07769 1.05754 1.73298
1.22109 0.96769 0.81994 1.01497 1.22664 0.93432 0.97203 1.02766
1.22802 0.90446 0.90137 0.99774 0.89029 1.60849 1.01053 1.61390
1.07032 1.21582 0.89843 0.94457 0.95221 0.91612 1.21517 0.95240
0.95744 1.00562 1.19755 0.94443 0.96488 0.94727 1.20054 0.91440
0.92113 1.46990 1.24862 0.98035 0.95298 0.94633 1.69847 1.18230
1.17065 1.47764 0.86655 0.81029 0.81919 0.78707 1.20452 1.21738
1.19197 1.19303 0.92227 0.97859 0.93100 1.22408 0.98832 0.95399
1.01198 1.23334 0.80164 1.00082 1.01447 0.90563 0.88800 0.88854
0.91297 0.91376 0.90137 0.89646 0.84225 0.94294 0.93205 0.96623
0.95171 0.92659 0.92666 0.98038 0.93115 0.95015 0.89824 0.91487
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.35 10.22 36.01 0.37 -0.98 16
2 C 0.52 6.94 7.96 -10.99 -0.09 6.86 16
3 O -0.55 -10.03 17.36 5.55 0.10 -9.93 16
4 N -0.62 -7.50 3.33 -170.51 -0.57 -8.07 16
5 C 0.10 0.83 5.81 -3.06 -0.02 0.81 16
6 C -0.12 -1.12 6.65 -24.90 -0.17 -1.28 16
7 C 0.08 1.01 3.31 -65.55 -0.22 0.79 16
8 H 0.09 1.23 7.56 -51.93 -0.39 0.83 16
9 N -0.67 -9.88 6.15 -97.53 -0.60 -10.48 16
10 C 0.10 1.79 2.36 -67.75 -0.16 1.63 16
11 H 0.07 1.25 7.50 -51.93 -0.39 0.86 16
12 C -0.09 -1.84 5.54 -26.63 -0.15 -1.98 16
13 C -0.02 -0.37 5.59 -27.48 -0.15 -0.52 16
14 C -0.49 -12.86 5.51 -98.92 -0.55 -13.41 16
15 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16
16 N -0.89 -26.06 12.73 55.43 0.71 -25.36 16
17 Si 0.89 21.28 27.27 -169.99 -4.64 16.64 16
18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
20 H -0.27 -6.18 6.46 56.52 0.37 -5.82 16
21 C 0.01 0.33 5.97 -27.48 -0.16 0.17 16
22 C -0.14 -2.90 5.06 -26.64 -0.13 -3.03 16
23 C 0.07 1.03 5.29 -2.52 -0.01 1.02 16
24 H 0.08 0.43 6.60 -51.93 -0.34 0.08 16
25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
27 H 0.07 0.47 8.02 -51.93 -0.42 0.05 16
28 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16
29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.34 4.84 8.06 -39.29 -0.32 4.53 16
32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
35 H 0.03 0.69 4.78 -51.93 -0.25 0.45 16
36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
37 H 0.05 1.55 7.07 -51.93 -0.37 1.18 16
38 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16
39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16
40 H 0.03 0.62 5.36 -51.93 -0.28 0.34 16
41 H 0.08 1.41 6.55 -51.93 -0.34 1.07 16
42 H 0.07 0.95 7.80 -51.93 -0.41 0.55 16
LS Contribution 321.21 15.07 4.84 4.84
Total: -1.00 -31.25 321.21 -8.59 -39.84
By element:
Atomic # 1 Polarization: 7.41 SS G_CDS: -6.89 Total: 0.52 kcal
Atomic # 6 Polarization: -6.47 SS G_CDS: -1.54 Total: -8.00 kcal
Atomic # 7 Polarization: -43.44 SS G_CDS: -0.46 Total: -43.91 kcal
Atomic # 8 Polarization: -10.03 SS G_CDS: 0.10 Total: -9.93 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -4.64 Total: 16.64 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -31.25 -8.59 -39.84 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169503151.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.052 kcal
(2) G-P(sol) polarization free energy of solvation -31.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.302 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.891 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds