Wall clock time and date at job start Mon Mar 30 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 119.99489 * 2 1 4 4 N 1.34771 * 120.00455 * 180.02562 * 2 1 3 5 5 C 1.47026 * 125.64590 * 0.03478 * 4 2 1 6 6 C 1.54325 * 107.27103 * 181.02780 * 5 4 2 7 7 C 1.55156 * 102.94240 * 22.19415 * 6 5 4 8 8 H 1.08996 * 111.03796 * 82.58729 * 7 6 5 9 9 N 1.46900 * 111.00280 * 206.42432 * 7 6 5 10 10 C 1.46905 * 110.99503 * 198.64930 * 9 7 6 11 11 H 1.08993 * 109.35692 * 35.17924 * 10 9 7 12 12 C 1.52966 * 109.40824 * 155.00077 * 10 9 7 13 13 C 1.53234 * 109.40173 * 183.70466 * 12 10 9 14 14 C 1.51270 * 108.53514 * 305.37116 * 13 12 10 15 15 C 1.37877 * 120.85136 * 231.36949 * 14 13 12 16 16 N 1.31513 * 120.00176 * 179.97438 * 15 14 13 17 17 Si 1.86794 * 119.99788 * 359.97438 * 15 14 13 18 18 H 1.48500 * 109.47205 * 90.00170 * 17 15 14 19 19 H 1.48502 * 109.47093 * 210.00007 * 17 15 14 20 20 H 1.48506 * 109.47319 * 330.00062 * 17 15 14 21 21 C 1.51275 * 118.29956 * 51.35008 * 14 13 12 22 22 C 1.52955 * 109.41493 * 275.35285 * 10 9 7 23 23 C 1.47421 * 125.65018 * 179.97438 * 4 2 1 24 24 H 1.09000 * 109.46498 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47001 * 300.00095 * 1 2 3 26 26 H 1.08998 * 109.47097 * 60.00522 * 1 2 3 27 27 H 1.08992 * 109.88601 * 300.44722 * 5 4 2 28 28 H 1.09004 * 109.87989 * 61.61299 * 5 4 2 29 29 H 1.09000 * 110.71797 * 263.83317 * 6 5 4 30 30 H 1.08998 * 110.72038 * 140.55993 * 6 5 4 31 31 H 1.00901 * 110.99999 * 74.70024 * 9 7 6 32 32 H 1.08997 * 109.47972 * 303.68150 * 12 10 9 33 33 H 1.08996 * 109.48230 * 63.72721 * 12 10 9 34 34 H 1.09000 * 109.62527 * 65.08768 * 13 12 10 35 35 H 1.08991 * 109.62384 * 185.66299 * 13 12 10 36 36 H 0.96996 * 119.99926 * 179.97438 * 16 15 14 37 37 H 1.09000 * 109.62450 * 188.93380 * 21 14 13 38 38 H 1.09001 * 109.78500 * 68.45824 * 21 14 13 39 39 H 1.09007 * 109.48467 * 296.27476 * 22 10 9 40 40 H 1.08998 * 109.48166 * 56.31812 * 22 10 9 41 41 H 1.08996 * 110.36456 * 37.07062 * 23 4 2 42 42 H 1.08994 * 110.36936 * 274.73864 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.5748 -2.5066 -0.0018 6 6 2.7282 -3.5315 0.0244 7 6 3.9082 -2.7118 0.6102 8 1 3.8592 -2.6784 1.6985 9 7 5.1985 -3.2511 0.1603 10 6 6.2921 -2.7910 1.0266 11 1 5.9339 -2.7196 2.0535 12 6 7.4483 -3.7902 0.9596 13 6 8.5506 -3.3592 1.9329 14 6 8.9407 -1.9323 1.6163 15 6 10.2615 -1.5865 1.4242 16 7 10.5818 -0.3409 1.1493 17 14 11.5959 -2.8870 1.5546 18 1 11.8211 -3.5006 0.2212 19 1 12.8549 -2.2586 2.0293 20 1 11.1727 -3.9358 2.5171 21 6 7.8445 -0.8947 1.5154 22 6 6.7679 -1.4151 0.5573 23 6 3.6481 -1.3121 -0.0011 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.9483 -2.6309 0.8813 28 1 0.9785 -2.6427 -0.9041 29 1 2.9608 -3.8762 -0.9831 30 1 2.4827 -4.3719 0.6736 31 1 5.3748 -3.0101 -0.8035 32 1 7.0883 -4.7817 1.2341 33 1 7.8482 -3.8161 -0.0540 34 1 8.1795 -3.4189 2.9560 35 1 9.4170 -4.0100 1.8162 36 1 11.5110 -0.0976 1.0145 37 1 8.2574 0.0377 1.1305 38 1 7.4073 -0.7231 2.4990 39 1 7.1839 -1.4973 -0.4469 40 1 5.9256 -0.7234 0.5467 41 1 4.1060 -0.5382 0.6148 42 1 4.0335 -1.2652 -1.0195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169503151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:47 Heat of formation + Delta-G solvation = -47.890788 kcal Electronic energy + Delta-G solvation = -20895.503805 eV Core-core repulsion = 17874.442087 eV Total energy + Delta-G solvation = -3021.061718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15108 -38.22591 -36.76890 -34.00103 -32.00005 -30.59094 -30.03856 -29.43261 -27.93014 -25.96626 -23.39240 -21.60567 -21.40035 -20.94036 -19.35591 -19.23071 -17.19804 -16.49701 -16.21115 -15.47915 -14.87559 -14.61909 -14.33005 -14.04773 -13.34014 -13.27677 -12.92197 -12.83130 -12.77816 -12.67988 -12.24279 -12.13055 -12.03890 -11.90926 -11.71607 -11.12989 -10.88498 -10.80594 -10.73350 -10.59949 -10.02752 -9.96836 -9.90268 -9.49053 -9.00744 -8.74683 -8.70827 -8.44579 -7.90563 -6.07045 -3.97749 2.54206 2.89224 3.28593 3.37304 3.38940 4.23411 4.40628 4.43040 4.60025 4.80358 4.93109 5.00100 5.13712 5.19510 5.20030 5.26536 5.39593 5.57104 5.71221 5.72396 5.77939 5.88250 6.02308 6.07222 6.13941 6.25888 6.54574 6.67707 6.76278 6.78478 7.00738 7.05174 7.12934 7.41992 7.44512 7.54640 7.63251 7.71598 7.80253 7.88795 8.07709 8.42098 9.00508 9.57646 11.02677 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033675 B = 0.004375 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.284028 B = 6398.568923 C = 7076.523514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.521 3.479 3 O -0.546 6.546 4 N -0.619 5.619 5 C 0.100 3.900 6 C -0.122 4.122 7 C 0.080 3.920 8 H 0.092 0.908 9 N -0.675 5.675 10 C 0.097 3.903 11 H 0.066 0.934 12 C -0.092 4.092 13 C -0.016 4.016 14 C -0.487 4.487 15 C 0.074 3.926 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.267 1.267 21 C 0.013 3.987 22 C -0.139 4.139 23 C 0.074 3.926 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.339 0.661 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.015 0.985 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.055 0.945 38 H 0.001 0.999 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.083 0.917 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.687 -6.470 -2.892 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.311 3.689 3 O -0.423 6.423 4 N -0.354 5.354 5 C -0.024 4.024 6 C -0.161 4.161 7 C -0.032 4.032 8 H 0.110 0.890 9 N -0.303 5.303 10 C -0.011 4.011 11 H 0.084 0.916 12 C -0.131 4.131 13 C -0.054 4.054 14 C -0.506 4.506 15 C -0.128 4.128 16 N -0.529 5.529 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.192 1.192 21 C -0.025 4.025 22 C -0.178 4.178 23 C -0.050 4.050 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.158 0.842 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.102 0.898 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.328 -6.324 -2.603 19.563 hybrid contribution 0.838 0.323 -0.354 0.965 sum -17.491 -6.001 -2.956 18.726 Atomic orbital electron populations 1.21865 0.91608 1.04178 1.05142 1.20527 0.90319 0.82218 0.75885 1.90755 1.70711 1.30694 1.50180 1.48585 1.07769 1.05754 1.73298 1.22109 0.96769 0.81994 1.01497 1.22664 0.93432 0.97203 1.02766 1.22802 0.90446 0.90137 0.99774 0.89029 1.60849 1.01053 1.61390 1.07032 1.21582 0.89843 0.94457 0.95221 0.91612 1.21517 0.95240 0.95744 1.00562 1.19755 0.94443 0.96488 0.94727 1.20054 0.91440 0.92113 1.46990 1.24862 0.98035 0.95298 0.94633 1.69847 1.18230 1.17065 1.47764 0.86655 0.81029 0.81919 0.78707 1.20452 1.21738 1.19197 1.19303 0.92227 0.97859 0.93100 1.22408 0.98832 0.95399 1.01198 1.23334 0.80164 1.00082 1.01447 0.90563 0.88800 0.88854 0.91297 0.91376 0.90137 0.89646 0.84225 0.94294 0.93205 0.96623 0.95171 0.92659 0.92666 0.98038 0.93115 0.95015 0.89824 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.22 36.01 0.37 -0.98 16 2 C 0.52 6.94 7.96 -10.99 -0.09 6.86 16 3 O -0.55 -10.03 17.36 5.55 0.10 -9.93 16 4 N -0.62 -7.50 3.33 -170.51 -0.57 -8.07 16 5 C 0.10 0.83 5.81 -3.06 -0.02 0.81 16 6 C -0.12 -1.12 6.65 -24.90 -0.17 -1.28 16 7 C 0.08 1.01 3.31 -65.55 -0.22 0.79 16 8 H 0.09 1.23 7.56 -51.93 -0.39 0.83 16 9 N -0.67 -9.88 6.15 -97.53 -0.60 -10.48 16 10 C 0.10 1.79 2.36 -67.75 -0.16 1.63 16 11 H 0.07 1.25 7.50 -51.93 -0.39 0.86 16 12 C -0.09 -1.84 5.54 -26.63 -0.15 -1.98 16 13 C -0.02 -0.37 5.59 -27.48 -0.15 -0.52 16 14 C -0.49 -12.86 5.51 -98.92 -0.55 -13.41 16 15 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16 16 N -0.89 -26.06 12.73 55.43 0.71 -25.36 16 17 Si 0.89 21.28 27.27 -169.99 -4.64 16.64 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.18 6.46 56.52 0.37 -5.82 16 21 C 0.01 0.33 5.97 -27.48 -0.16 0.17 16 22 C -0.14 -2.90 5.06 -26.64 -0.13 -3.03 16 23 C 0.07 1.03 5.29 -2.52 -0.01 1.02 16 24 H 0.08 0.43 6.60 -51.93 -0.34 0.08 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.47 8.02 -51.93 -0.42 0.05 16 28 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.34 4.84 8.06 -39.29 -0.32 4.53 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.03 0.69 4.78 -51.93 -0.25 0.45 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.05 1.55 7.07 -51.93 -0.37 1.18 16 38 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.03 0.62 5.36 -51.93 -0.28 0.34 16 41 H 0.08 1.41 6.55 -51.93 -0.34 1.07 16 42 H 0.07 0.95 7.80 -51.93 -0.41 0.55 16 LS Contribution 321.21 15.07 4.84 4.84 Total: -1.00 -31.25 321.21 -8.59 -39.84 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.89 Total: 0.52 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.54 Total: -8.00 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.46 Total: -43.91 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.10 Total: -9.93 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.64 Total: 16.64 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.25 -8.59 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169503151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.052 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds