Wall clock time and date at job start Mon Mar 30 2020 00:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 119.99489 * 2 1 4 4 N 1.34771 * 120.00455 * 180.02562 * 2 1 3 5 5 C 1.47026 * 125.64590 * 0.03478 * 4 2 1 6 6 C 1.54325 * 107.27103 * 181.02780 * 5 4 2 7 7 C 1.55156 * 102.94240 * 22.19415 * 6 5 4 8 8 H 1.08996 * 111.03796 * 82.58729 * 7 6 5 9 9 N 1.46900 * 111.00280 * 206.42432 * 7 6 5 10 10 C 1.46905 * 110.99503 * 198.64930 * 9 7 6 11 11 H 1.08993 * 109.35692 * 35.17924 * 10 9 7 12 12 C 1.52966 * 109.40824 * 155.00077 * 10 9 7 13 13 C 1.53234 * 109.40173 * 183.70466 * 12 10 9 14 14 C 1.51270 * 108.53514 * 305.37116 * 13 12 10 15 15 C 1.37877 * 120.85136 * 231.36949 * 14 13 12 16 16 N 1.31513 * 120.00176 * 179.97438 * 15 14 13 17 17 Si 1.86794 * 119.99788 * 359.97438 * 15 14 13 18 18 H 1.48500 * 109.47205 * 90.00170 * 17 15 14 19 19 H 1.48502 * 109.47093 * 210.00007 * 17 15 14 20 20 H 1.48506 * 109.47319 * 330.00062 * 17 15 14 21 21 C 1.51275 * 118.29956 * 51.35008 * 14 13 12 22 22 C 1.52955 * 109.41493 * 275.35285 * 10 9 7 23 23 C 1.47421 * 125.65018 * 179.97438 * 4 2 1 24 24 H 1.09000 * 109.46498 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47001 * 300.00095 * 1 2 3 26 26 H 1.08998 * 109.47097 * 60.00522 * 1 2 3 27 27 H 1.08992 * 109.88601 * 300.44722 * 5 4 2 28 28 H 1.09004 * 109.87989 * 61.61299 * 5 4 2 29 29 H 1.09000 * 110.71797 * 263.83317 * 6 5 4 30 30 H 1.08998 * 110.72038 * 140.55993 * 6 5 4 31 31 H 1.00901 * 110.99999 * 74.70024 * 9 7 6 32 32 H 1.08997 * 109.47972 * 303.68150 * 12 10 9 33 33 H 1.08996 * 109.48230 * 63.72721 * 12 10 9 34 34 H 1.09000 * 109.62527 * 65.08768 * 13 12 10 35 35 H 1.08991 * 109.62384 * 185.66299 * 13 12 10 36 36 H 0.96996 * 119.99926 * 179.97438 * 16 15 14 37 37 H 1.09000 * 109.62450 * 188.93380 * 21 14 13 38 38 H 1.09001 * 109.78500 * 68.45824 * 21 14 13 39 39 H 1.09007 * 109.48467 * 296.27476 * 22 10 9 40 40 H 1.08998 * 109.48166 * 56.31812 * 22 10 9 41 41 H 1.08996 * 110.36456 * 37.07062 * 23 4 2 42 42 H 1.08994 * 110.36936 * 274.73864 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.5748 -2.5066 -0.0018 6 6 2.7282 -3.5315 0.0244 7 6 3.9082 -2.7118 0.6102 8 1 3.8592 -2.6784 1.6985 9 7 5.1985 -3.2511 0.1603 10 6 6.2921 -2.7910 1.0266 11 1 5.9339 -2.7196 2.0535 12 6 7.4483 -3.7902 0.9596 13 6 8.5506 -3.3592 1.9329 14 6 8.9407 -1.9323 1.6163 15 6 10.2615 -1.5865 1.4242 16 7 10.5818 -0.3409 1.1493 17 14 11.5959 -2.8870 1.5546 18 1 11.8211 -3.5006 0.2212 19 1 12.8549 -2.2586 2.0293 20 1 11.1727 -3.9358 2.5171 21 6 7.8445 -0.8947 1.5154 22 6 6.7679 -1.4151 0.5573 23 6 3.6481 -1.3121 -0.0011 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.9483 -2.6309 0.8813 28 1 0.9785 -2.6427 -0.9041 29 1 2.9608 -3.8762 -0.9831 30 1 2.4827 -4.3719 0.6736 31 1 5.3748 -3.0101 -0.8035 32 1 7.0883 -4.7817 1.2341 33 1 7.8482 -3.8161 -0.0540 34 1 8.1795 -3.4189 2.9560 35 1 9.4170 -4.0100 1.8162 36 1 11.5110 -0.0976 1.0145 37 1 8.2574 0.0377 1.1305 38 1 7.4073 -0.7231 2.4990 39 1 7.1839 -1.4973 -0.4469 40 1 5.9256 -0.7234 0.5467 41 1 4.1060 -0.5382 0.6148 42 1 4.0335 -1.2652 -1.0195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169503151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:46 Heat of formation + Delta-G solvation = -69.981601 kcal Electronic energy + Delta-G solvation = -20896.461734 eV Core-core repulsion = 17874.442087 eV Total energy + Delta-G solvation = -3022.019648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16790 -39.56046 -38.14558 -35.53753 -33.64773 -31.84315 -31.38604 -30.70287 -29.21139 -27.41542 -24.40332 -23.37110 -23.18337 -22.01886 -20.87495 -20.28999 -18.32746 -17.93734 -17.48995 -16.56965 -16.39352 -16.12932 -15.71702 -15.11686 -14.90901 -14.63778 -14.39328 -14.19295 -13.92913 -13.73301 -13.55121 -13.38461 -13.27683 -13.07991 -12.95659 -12.70604 -12.66099 -12.33155 -12.12612 -11.83566 -11.74071 -11.61529 -11.35644 -11.07401 -10.79748 -10.55645 -10.54327 -9.76396 -9.28916 -8.17296 -6.12014 1.38650 1.40777 1.50615 1.54974 1.98102 2.40778 3.05539 3.20853 3.56469 3.70472 3.90522 3.95843 4.16711 4.26705 4.31390 4.35629 4.48545 4.56364 4.61609 4.63811 4.74633 4.77998 4.80838 4.98495 5.00462 5.03895 5.08751 5.09955 5.17523 5.25071 5.30250 5.32802 5.39721 5.59680 5.62203 5.76583 5.82503 6.16269 6.33049 6.48010 6.50978 6.95153 7.09082 7.46250 8.94253 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033675 B = 0.004375 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.284028 B = 6398.568923 C = 7076.523514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.508 3.492 3 O -0.612 6.612 4 N -0.619 5.619 5 C 0.097 3.903 6 C -0.110 4.110 7 C 0.080 3.920 8 H 0.086 0.914 9 N -0.660 5.660 10 C 0.110 3.890 11 H 0.062 0.938 12 C -0.086 4.086 13 C -0.019 4.019 14 C -0.497 4.497 15 C 0.014 3.986 16 N -0.938 5.938 17 Si 0.947 3.053 18 H -0.272 1.272 19 H -0.295 1.295 20 H -0.249 1.249 21 C 0.008 3.992 22 C -0.126 4.126 23 C 0.074 3.926 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.344 0.656 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.019 0.981 35 H 0.033 0.967 36 H 0.261 0.739 37 H 0.015 0.985 38 H -0.007 1.007 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.043 0.957 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.353 -9.864 -3.157 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.300 3.700 3 O -0.495 6.495 4 N -0.352 5.352 5 C -0.025 4.025 6 C -0.148 4.148 7 C -0.031 4.031 8 H 0.104 0.896 9 N -0.289 5.289 10 C 0.001 3.999 11 H 0.080 0.920 12 C -0.124 4.124 13 C -0.057 4.057 14 C -0.516 4.516 15 C -0.183 4.183 16 N -0.579 5.579 17 Si 0.773 3.227 18 H -0.197 1.197 19 H -0.222 1.222 20 H -0.174 1.174 21 C -0.030 4.030 22 C -0.165 4.165 23 C -0.052 4.052 24 H 0.127 0.873 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.011 0.989 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.043 -9.786 -2.869 23.383 hybrid contribution 1.600 1.441 -0.251 2.168 sum -19.442 -8.344 -3.119 21.386 Atomic orbital electron populations 1.21889 0.86980 1.06650 1.06033 1.21614 0.92488 0.81428 0.74468 1.90723 1.72389 1.33091 1.53268 1.48747 1.06932 1.07352 1.72212 1.22427 0.96722 0.79121 1.04213 1.22651 0.91465 0.97390 1.03267 1.22868 0.90698 0.89995 0.99579 0.89602 1.60832 1.00687 1.60689 1.06654 1.21304 0.90772 0.92176 0.95671 0.91963 1.21399 0.94527 0.97246 0.99226 1.19789 0.95845 0.94273 0.95798 1.20690 0.91549 0.94026 1.45341 1.25726 1.00558 0.97062 0.94949 1.70012 1.18423 1.19280 1.50142 0.85711 0.78022 0.79762 0.79228 1.19733 1.22187 1.17350 1.19281 0.93650 0.96568 0.93505 1.22239 0.97500 0.97544 0.99234 1.23151 0.81887 0.99834 1.00300 0.87251 0.87945 0.87785 0.88710 0.88482 0.89453 0.87521 0.83742 0.91554 0.93752 0.96239 0.94830 0.92963 0.96664 0.98901 0.94271 0.94355 0.93833 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 10.22 71.24 0.73 -1.31 16 2 C 0.51 13.11 7.96 87.66 0.70 13.80 16 3 O -0.61 -23.36 17.36 -3.04 -0.05 -23.42 16 4 N -0.62 -13.94 3.33 -811.75 -2.70 -16.64 16 5 C 0.10 1.17 5.81 86.73 0.50 1.67 16 6 C -0.11 -1.54 6.65 31.78 0.21 -1.33 16 7 C 0.08 1.85 3.31 46.32 0.15 2.01 16 8 H 0.09 2.13 7.56 -2.39 -0.02 2.11 16 9 N -0.66 -17.93 6.15 -462.47 -2.85 -20.77 16 10 C 0.11 3.93 2.36 44.89 0.11 4.03 16 11 H 0.06 2.29 7.50 -2.39 -0.02 2.28 16 12 C -0.09 -3.23 5.54 30.66 0.17 -3.06 16 13 C -0.02 -0.85 5.59 30.11 0.17 -0.69 16 14 C -0.50 -26.71 5.51 -16.17 -0.09 -26.79 16 15 C 0.01 0.81 5.46 84.65 0.46 1.27 16 16 N -0.94 -57.31 12.73 21.45 0.27 -57.03 16 17 Si 0.95 43.93 27.27 68.60 1.87 45.80 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.25 -10.76 6.46 99.48 0.64 -10.12 16 21 C 0.01 0.43 5.97 30.11 0.18 0.61 16 22 C -0.13 -5.38 5.06 30.66 0.15 -5.23 16 23 C 0.07 2.04 5.29 86.87 0.46 2.50 16 24 H 0.11 0.68 6.60 -2.39 -0.02 0.66 16 25 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 0.75 8.02 -2.39 -0.02 0.73 16 28 H 0.10 0.72 8.09 -2.38 -0.02 0.70 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.34 9.17 8.06 -89.69 -0.72 8.44 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.03 1.47 4.78 -2.39 -0.01 1.46 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.01 0.89 7.07 -2.39 -0.02 0.87 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.04 1.57 5.36 -2.39 -0.01 1.56 16 41 H 0.04 1.55 6.55 -2.39 -0.02 1.53 16 42 H 0.06 1.72 7.80 -2.39 -0.02 1.70 16 Total: -1.00 -72.87 321.21 0.67 -72.20 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.22 Total: 12.38 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 3.91 Total: -12.51 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -5.27 Total: -94.45 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.87 Total: 45.80 kcal Total: -72.87 0.67 -72.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169503151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.215 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds