Wall clock time and date at job start Mon Mar 30 2020 00:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 119.99944 * 2 1 4 4 N 1.34776 * 120.00096 * 179.97438 * 2 1 3 5 5 C 1.47423 * 125.64670 * 0.04695 * 4 2 1 6 6 C 1.55121 * 104.94217 * 203.96339 * 5 4 2 7 7 C 1.55155 * 101.48764 * 323.22272 * 6 5 4 8 8 H 1.08999 * 110.72354 * 276.82783 * 7 6 5 9 9 N 1.46900 * 110.72171 * 153.73168 * 7 6 5 10 10 C 1.46899 * 111.00109 * 157.44133 * 9 7 6 11 11 H 1.09003 * 109.35425 * 324.82855 * 10 9 7 12 12 C 1.52964 * 109.41351 * 84.64851 * 10 9 7 13 13 C 1.52795 * 109.48303 * 183.57454 * 12 10 9 14 14 C 1.51269 * 108.76389 * 305.60781 * 13 12 10 15 15 C 1.37885 * 120.84892 * 231.31407 * 14 13 12 16 16 N 1.31516 * 119.99913 * 179.72056 * 15 14 13 17 17 Si 1.86805 * 119.99854 * 359.44349 * 15 14 13 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 14 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 14 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 14 21 21 C 1.51267 * 118.30149 * 51.04085 * 14 13 12 22 22 C 1.52956 * 109.41365 * 205.00186 * 10 9 7 23 23 C 1.47026 * 125.64732 * 179.97438 * 4 2 1 24 24 H 1.09002 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47639 * 300.00350 * 1 2 3 26 26 H 1.09006 * 109.47307 * 60.00188 * 1 2 3 27 27 H 1.08995 * 110.37173 * 322.92925 * 5 4 2 28 28 H 1.09001 * 110.36803 * 85.14434 * 5 4 2 29 29 H 1.08999 * 111.16726 * 205.13153 * 6 5 4 30 30 H 1.09004 * 110.93778 * 81.21816 * 6 5 4 31 31 H 1.00897 * 111.00019 * 281.39541 * 9 7 6 32 32 H 1.09000 * 109.48252 * 303.68581 * 12 10 9 33 33 H 1.09004 * 109.47818 * 63.72436 * 12 10 9 34 34 H 1.09004 * 109.55897 * 185.79929 * 13 12 10 35 35 H 1.09000 * 109.46780 * 65.36797 * 13 12 10 36 36 H 0.97001 * 119.99646 * 180.02562 * 16 15 14 37 37 H 1.08999 * 109.62452 * 68.61481 * 21 14 13 38 38 H 1.08999 * 109.62830 * 188.99984 * 21 14 13 39 39 H 1.09000 * 109.48684 * 56.31784 * 22 10 9 40 40 H 1.09002 * 109.48395 * 296.27090 * 22 10 9 41 41 H 1.09003 * 109.88163 * 59.56566 * 23 4 2 42 42 H 1.08989 * 110.01475 * 298.47040 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5729 -2.5102 0.0001 6 6 2.6553 -3.4393 0.6097 7 6 3.9548 -2.8232 0.0275 8 1 4.1413 -3.1966 -0.9794 9 7 5.1004 -3.1026 0.9037 10 6 6.3645 -3.0196 0.1601 11 1 6.2112 -3.3858 -0.8551 12 6 6.8303 -1.5634 0.1103 13 6 8.0973 -1.4624 -0.7378 14 6 9.1260 -2.4282 -0.1927 15 6 10.4065 -2.0075 0.0983 16 7 11.2860 -2.8603 0.5768 17 14 10.8941 -0.2281 -0.1943 18 1 10.6210 0.5675 1.0295 19 1 12.3418 -0.1585 -0.5173 20 1 10.1070 0.3208 -1.3275 21 6 8.7123 -3.8659 0.0309 22 6 7.4213 -3.8786 0.8564 23 6 3.6439 -1.3118 0.0001 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.6733 -2.5197 0.6154 28 1 1.3384 -2.8202 -1.0182 29 1 2.5258 -4.4680 0.2732 30 1 2.6494 -3.3824 1.6982 31 1 5.1072 -2.4818 1.6990 32 1 6.0470 -0.9460 -0.3292 33 1 7.0438 -1.2153 1.1210 34 1 8.4881 -0.4459 -0.6903 35 1 7.8644 -1.7201 -1.7709 36 1 12.1867 -2.5642 0.7818 37 1 8.5373 -4.3501 -0.9298 38 1 9.4994 -4.3940 0.5691 39 1 7.0570 -4.9020 0.9456 40 1 7.6209 -3.4756 1.8493 41 1 4.0643 -0.8310 0.8834 42 1 4.0628 -0.8633 -0.9006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169503153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:53 Heat of formation + Delta-G solvation = -47.669180 kcal Electronic energy + Delta-G solvation = -20894.217624 eV Core-core repulsion = 17873.165515 eV Total energy + Delta-G solvation = -3021.052108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18900 -38.26705 -36.78814 -34.01797 -31.99528 -30.56258 -30.04138 -29.63960 -27.81747 -26.01674 -23.41947 -21.78563 -21.22986 -20.94732 -19.45628 -19.22440 -17.22136 -16.57367 -16.17448 -15.49148 -14.94185 -14.66431 -14.32613 -14.10891 -13.40221 -13.19384 -13.05184 -12.78079 -12.72555 -12.58335 -12.34291 -12.13550 -12.08153 -11.94555 -11.67740 -11.30176 -10.90164 -10.86437 -10.78457 -10.39602 -10.12419 -10.01818 -9.82444 -9.61422 -8.89994 -8.82672 -8.69178 -8.44627 -7.94862 -6.08002 -3.98389 2.49870 2.85398 3.28270 3.37077 3.39167 4.22290 4.40181 4.43312 4.48059 4.76216 4.92847 5.03062 5.09838 5.16794 5.18957 5.23373 5.32370 5.55078 5.68169 5.72213 5.72673 5.86184 5.99822 6.00597 6.13418 6.21039 6.46899 6.70782 6.81412 6.85881 6.88409 7.06808 7.19597 7.36900 7.40254 7.52283 7.62340 7.70255 7.85037 7.89487 8.03130 8.42401 9.00134 9.57112 11.01554 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027820 B = 0.004630 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.222213 B = 6046.271500 C = 6895.470591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.521 3.479 3 O -0.548 6.548 4 N -0.618 5.618 5 C 0.096 3.904 6 C -0.122 4.122 7 C 0.080 3.920 8 H 0.092 0.908 9 N -0.675 5.675 10 C 0.098 3.902 11 H 0.066 0.934 12 C -0.138 4.138 13 C -0.012 4.012 14 C -0.487 4.487 15 C 0.075 3.925 16 N -0.890 5.890 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.268 1.268 21 C 0.009 3.991 22 C -0.093 4.093 23 C 0.079 3.921 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.339 0.661 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.002 0.998 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.482 -0.891 -0.396 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.310 3.690 3 O -0.426 6.426 4 N -0.353 5.353 5 C -0.027 4.027 6 C -0.160 4.160 7 C -0.032 4.032 8 H 0.110 0.890 9 N -0.303 5.303 10 C -0.011 4.011 11 H 0.084 0.916 12 C -0.177 4.177 13 C -0.050 4.050 14 C -0.506 4.506 15 C -0.127 4.127 16 N -0.528 5.528 17 Si 0.714 3.286 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.193 1.193 21 C -0.029 4.029 22 C -0.131 4.131 23 C -0.046 4.046 24 H 0.096 0.904 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.158 0.842 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.020 0.980 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.048 -0.979 -0.390 20.075 hybrid contribution 0.429 2.012 -0.215 2.068 sum -19.618 1.033 -0.605 19.655 Atomic orbital electron populations 1.21878 0.91577 1.04273 1.05155 1.20532 0.90331 0.82192 0.75919 1.90745 1.70740 1.30779 1.50328 1.48608 1.07619 1.05905 1.73157 1.22468 0.97180 0.81927 1.01113 1.22852 0.92942 0.98793 1.01431 1.22706 0.91723 0.90949 0.97842 0.89011 1.60894 1.02227 1.57534 1.09686 1.21614 0.87325 0.95604 0.96510 0.91559 1.22274 0.98751 0.95747 1.00948 1.19601 0.93467 0.96791 0.95110 1.20047 0.94436 0.94321 1.41784 1.24838 0.96006 0.97250 0.94586 1.69838 1.04730 1.34518 1.43723 0.86695 0.77233 0.85623 0.79014 1.20480 1.21634 1.19325 1.19385 0.92897 0.96065 0.94527 1.21574 0.95831 0.96278 0.99456 1.23018 0.80230 0.98827 1.02513 0.90444 0.88834 0.88810 0.90405 0.91187 0.89397 0.90153 0.84189 0.94985 0.92940 0.95427 0.96702 0.92644 0.97987 0.92416 0.94484 0.93408 0.91284 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.19 36.00 0.37 -0.92 16 2 C 0.52 6.70 7.96 -10.99 -0.09 6.61 16 3 O -0.55 -9.76 17.43 5.55 0.10 -9.66 16 4 N -0.62 -7.25 3.33 -170.39 -0.57 -7.81 16 5 C 0.10 0.77 6.39 -2.42 -0.02 0.75 16 6 C -0.12 -1.11 6.79 -24.47 -0.17 -1.28 16 7 C 0.08 0.98 3.23 -65.88 -0.21 0.77 16 8 H 0.09 1.15 7.48 -51.93 -0.39 0.77 16 9 N -0.67 -9.96 6.14 -97.87 -0.60 -10.56 16 10 C 0.10 1.79 2.37 -67.75 -0.16 1.63 16 11 H 0.07 1.24 7.46 -51.93 -0.39 0.85 16 12 C -0.14 -2.74 5.05 -26.86 -0.14 -2.88 16 13 C -0.01 -0.27 5.56 -27.71 -0.15 -0.42 16 14 C -0.49 -12.84 5.52 -98.92 -0.55 -13.38 16 15 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 16 N -0.89 -25.81 12.73 55.43 0.71 -25.10 16 17 Si 0.89 21.52 27.25 -169.99 -4.63 16.89 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.37 6.49 56.52 0.37 -6.01 16 21 C 0.01 0.23 5.97 -27.48 -0.16 0.06 16 22 C -0.09 -1.94 5.54 -26.63 -0.15 -2.09 16 23 C 0.08 1.06 5.00 -3.06 -0.02 1.05 16 24 H 0.08 0.40 6.09 -51.93 -0.32 0.09 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.45 6.94 -51.93 -0.36 0.09 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.34 4.97 7.85 -39.29 -0.31 4.66 16 32 H 0.03 0.58 5.89 -51.93 -0.31 0.28 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.03 0.65 4.80 -51.93 -0.25 0.40 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.06 1.57 7.07 -51.93 -0.37 1.21 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.04 7.53 -51.93 -0.39 0.65 16 42 H 0.07 1.04 7.48 -51.94 -0.39 0.66 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -31.14 320.94 -8.56 -39.70 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.86 Total: -0.17 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.54 Total: -8.12 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.46 Total: -43.48 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.10 Total: -9.66 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.63 Total: 16.89 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.14 -8.56 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169503153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.969 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds