Wall clock time and date at job start Mon Mar 30 2020 00:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 119.99944 * 2 1 4 4 N 1.34776 * 120.00096 * 179.97438 * 2 1 3 5 5 C 1.47423 * 125.64670 * 0.04695 * 4 2 1 6 6 C 1.55121 * 104.94217 * 203.96339 * 5 4 2 7 7 C 1.55155 * 101.48764 * 323.22272 * 6 5 4 8 8 H 1.08999 * 110.72354 * 276.82783 * 7 6 5 9 9 N 1.46900 * 110.72171 * 153.73168 * 7 6 5 10 10 C 1.46899 * 111.00109 * 157.44133 * 9 7 6 11 11 H 1.09003 * 109.35425 * 324.82855 * 10 9 7 12 12 C 1.52964 * 109.41351 * 84.64851 * 10 9 7 13 13 C 1.52795 * 109.48303 * 183.57454 * 12 10 9 14 14 C 1.51269 * 108.76389 * 305.60781 * 13 12 10 15 15 C 1.37885 * 120.84892 * 231.31407 * 14 13 12 16 16 N 1.31516 * 119.99913 * 179.72056 * 15 14 13 17 17 Si 1.86805 * 119.99854 * 359.44349 * 15 14 13 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 14 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 14 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 14 21 21 C 1.51267 * 118.30149 * 51.04085 * 14 13 12 22 22 C 1.52956 * 109.41365 * 205.00186 * 10 9 7 23 23 C 1.47026 * 125.64732 * 179.97438 * 4 2 1 24 24 H 1.09002 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47639 * 300.00350 * 1 2 3 26 26 H 1.09006 * 109.47307 * 60.00188 * 1 2 3 27 27 H 1.08995 * 110.37173 * 322.92925 * 5 4 2 28 28 H 1.09001 * 110.36803 * 85.14434 * 5 4 2 29 29 H 1.08999 * 111.16726 * 205.13153 * 6 5 4 30 30 H 1.09004 * 110.93778 * 81.21816 * 6 5 4 31 31 H 1.00897 * 111.00019 * 281.39541 * 9 7 6 32 32 H 1.09000 * 109.48252 * 303.68581 * 12 10 9 33 33 H 1.09004 * 109.47818 * 63.72436 * 12 10 9 34 34 H 1.09004 * 109.55897 * 185.79929 * 13 12 10 35 35 H 1.09000 * 109.46780 * 65.36797 * 13 12 10 36 36 H 0.97001 * 119.99646 * 180.02562 * 16 15 14 37 37 H 1.08999 * 109.62452 * 68.61481 * 21 14 13 38 38 H 1.08999 * 109.62830 * 188.99984 * 21 14 13 39 39 H 1.09000 * 109.48684 * 56.31784 * 22 10 9 40 40 H 1.09002 * 109.48395 * 296.27090 * 22 10 9 41 41 H 1.09003 * 109.88163 * 59.56566 * 23 4 2 42 42 H 1.08989 * 110.01475 * 298.47040 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5729 -2.5102 0.0001 6 6 2.6553 -3.4393 0.6097 7 6 3.9548 -2.8232 0.0275 8 1 4.1413 -3.1966 -0.9794 9 7 5.1004 -3.1026 0.9037 10 6 6.3645 -3.0196 0.1601 11 1 6.2112 -3.3858 -0.8551 12 6 6.8303 -1.5634 0.1103 13 6 8.0973 -1.4624 -0.7378 14 6 9.1260 -2.4282 -0.1927 15 6 10.4065 -2.0075 0.0983 16 7 11.2860 -2.8603 0.5768 17 14 10.8941 -0.2281 -0.1943 18 1 10.6210 0.5675 1.0295 19 1 12.3418 -0.1585 -0.5173 20 1 10.1070 0.3208 -1.3275 21 6 8.7123 -3.8659 0.0309 22 6 7.4213 -3.8786 0.8564 23 6 3.6439 -1.3118 0.0001 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.6733 -2.5197 0.6154 28 1 1.3384 -2.8202 -1.0182 29 1 2.5258 -4.4680 0.2732 30 1 2.6494 -3.3824 1.6982 31 1 5.1072 -2.4818 1.6990 32 1 6.0470 -0.9460 -0.3292 33 1 7.0438 -1.2153 1.1210 34 1 8.4881 -0.4459 -0.6903 35 1 7.8644 -1.7201 -1.7709 36 1 12.1867 -2.5642 0.7818 37 1 8.5373 -4.3501 -0.9298 38 1 9.4994 -4.3940 0.5691 39 1 7.0570 -4.9020 0.9456 40 1 7.6209 -3.4756 1.8493 41 1 4.0643 -0.8310 0.8834 42 1 4.0628 -0.8633 -0.9006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169503153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:52 Heat of formation + Delta-G solvation = -69.341097 kcal Electronic energy + Delta-G solvation = -20895.157388 eV Core-core repulsion = 17873.165515 eV Total energy + Delta-G solvation = -3021.991873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16117 -39.57166 -38.13879 -35.53861 -33.62074 -31.81295 -31.44796 -30.75987 -29.09348 -27.45505 -24.35209 -23.56131 -23.01276 -22.00197 -20.89093 -20.31290 -18.30219 -17.92207 -17.49749 -16.51190 -16.40823 -16.19036 -15.77707 -15.13936 -14.86880 -14.68899 -14.38616 -14.10981 -13.99646 -13.70722 -13.47381 -13.36659 -13.30114 -12.98222 -12.95058 -12.77377 -12.69042 -12.41789 -12.07733 -11.88536 -11.71662 -11.58437 -11.46684 -11.04443 -10.76752 -10.57680 -10.53896 -9.75616 -9.29406 -8.18595 -6.11546 1.33228 1.37079 1.45026 1.55891 1.99277 2.37649 3.04861 3.22093 3.54320 3.67534 3.90823 3.98946 4.16726 4.26074 4.30167 4.40155 4.48521 4.52793 4.62166 4.62793 4.72305 4.77610 4.81393 4.98146 5.03730 5.05328 5.09060 5.14017 5.16988 5.20761 5.27115 5.33992 5.41685 5.55611 5.63689 5.78594 5.86463 6.19378 6.33887 6.47013 6.52149 6.95947 7.09441 7.46017 8.92385 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027820 B = 0.004630 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.222213 B = 6046.271500 C = 6895.470591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.509 3.491 3 O -0.611 6.611 4 N -0.618 5.618 5 C 0.096 3.904 6 C -0.112 4.112 7 C 0.080 3.920 8 H 0.094 0.906 9 N -0.667 5.667 10 C 0.111 3.889 11 H 0.068 0.932 12 C -0.130 4.130 13 C -0.015 4.015 14 C -0.496 4.496 15 C 0.022 3.978 16 N -0.931 5.931 17 Si 0.936 3.064 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.259 1.259 21 C 0.006 3.994 22 C -0.082 4.082 23 C 0.080 3.920 24 H 0.109 0.891 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.341 0.659 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.022 0.978 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.000 1.000 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.033 0.967 41 H 0.049 0.951 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.934 -1.309 -0.693 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.301 3.699 3 O -0.494 6.494 4 N -0.351 5.351 5 C -0.026 4.026 6 C -0.150 4.150 7 C -0.031 4.031 8 H 0.112 0.888 9 N -0.295 5.295 10 C 0.002 3.998 11 H 0.086 0.914 12 C -0.169 4.169 13 C -0.054 4.054 14 C -0.515 4.515 15 C -0.176 4.176 16 N -0.571 5.571 17 Si 0.763 3.237 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.183 1.183 21 C -0.032 4.032 22 C -0.120 4.120 23 C -0.046 4.046 24 H 0.128 0.872 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.129 0.871 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.019 0.981 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.548 -1.431 -0.692 23.601 hybrid contribution 1.467 2.076 -0.147 2.546 sum -22.081 0.645 -0.839 22.106 Atomic orbital electron populations 1.21908 0.87121 1.06682 1.06041 1.21579 0.92423 0.81405 0.74496 1.90712 1.72351 1.33041 1.53253 1.48765 1.06857 1.07403 1.72121 1.22758 0.97602 0.79192 1.03007 1.22843 0.90894 0.99903 1.01358 1.22796 0.92144 0.90342 0.97854 0.88809 1.60827 1.01375 1.57637 1.09669 1.21310 0.88281 0.93635 0.96573 0.91378 1.22169 0.97582 0.97463 0.99693 1.19637 0.94273 0.95679 0.95778 1.20660 0.94959 0.95545 1.40343 1.25561 0.96380 1.00547 0.95131 1.69966 1.05064 1.36188 1.45873 0.85876 0.76896 0.81791 0.79137 1.20258 1.21626 1.18345 1.19355 0.94041 0.95177 0.94635 1.21369 0.94785 0.97839 0.98048 1.22834 0.81933 0.99379 1.00447 0.87240 0.87867 0.87872 0.87120 0.89144 0.87361 0.90230 0.83970 0.93232 0.93924 0.95913 0.96286 0.92854 0.98117 0.95721 0.92867 0.94797 0.93309 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.19 71.23 0.73 -1.14 16 2 C 0.51 12.23 7.96 87.65 0.70 12.93 16 3 O -0.61 -21.89 17.43 -3.04 -0.05 -21.94 16 4 N -0.62 -13.01 3.33 -811.38 -2.70 -15.71 16 5 C 0.10 1.09 6.39 86.93 0.56 1.64 16 6 C -0.11 -1.58 6.79 32.06 0.22 -1.37 16 7 C 0.08 1.76 3.23 46.11 0.15 1.91 16 8 H 0.09 2.09 7.48 -2.39 -0.02 2.07 16 9 N -0.67 -18.36 6.14 -463.54 -2.85 -21.20 16 10 C 0.11 3.93 2.37 44.89 0.11 4.03 16 11 H 0.07 2.42 7.46 -2.39 -0.02 2.40 16 12 C -0.13 -5.07 5.05 30.51 0.15 -4.92 16 13 C -0.02 -0.72 5.56 29.96 0.17 -0.55 16 14 C -0.50 -26.47 5.52 -16.17 -0.09 -26.56 16 15 C 0.02 1.22 5.46 84.66 0.46 1.69 16 16 N -0.93 -55.70 12.73 21.45 0.27 -55.42 16 17 Si 0.94 44.79 27.25 68.60 1.87 46.66 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 20 H -0.26 -11.87 6.49 99.48 0.65 -11.22 16 21 C 0.01 0.30 5.97 30.11 0.18 0.48 16 22 C -0.08 -3.39 5.54 30.66 0.17 -3.22 16 23 C 0.08 2.06 5.00 86.73 0.43 2.50 16 24 H 0.11 0.55 6.09 -2.39 -0.01 0.54 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.11 0.62 6.94 -2.39 -0.02 0.60 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.34 9.48 7.85 -89.70 -0.70 8.77 16 32 H 0.05 1.77 5.89 -2.39 -0.01 1.75 16 33 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.02 1.06 4.80 -2.39 -0.01 1.04 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.02 1.38 7.07 -2.39 -0.02 1.36 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.45 7.53 -2.39 -0.02 1.44 16 42 H 0.05 1.39 7.48 -2.39 -0.02 1.37 16 Total: -1.00 -70.79 320.94 0.72 -70.07 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.24 Total: 10.12 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 3.93 Total: -12.57 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -5.27 Total: -92.34 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.87 Total: 46.66 kcal Total: -70.79 0.72 -70.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169503153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.729 kcal (2) G-P(sol) polarization free energy of solvation -70.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds