Wall clock time and date at job start Mon Mar 30 2020 00:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21277 * 120.00161 * 2 1 4 4 N 1.34781 * 119.99675 * 179.97438 * 2 1 3 5 5 C 1.47423 * 125.64790 * 0.02998 * 4 2 1 6 6 C 1.54909 * 104.82886 * 155.82575 * 5 4 2 7 7 C 1.55155 * 101.58759 * 37.00505 * 6 5 4 8 8 H 1.09000 * 110.72079 * 83.03801 * 7 6 5 9 9 N 1.46893 * 110.72012 * 206.13646 * 7 6 5 10 10 C 1.46905 * 111.00021 * 214.25465 * 9 7 6 11 11 C 1.50694 * 110.01504 * 302.90051 * 10 9 7 12 12 H 1.08004 * 120.00478 * 118.06907 * 11 10 9 13 13 C 1.37877 * 119.99979 * 298.06769 * 11 10 9 14 14 N 1.31514 * 120.00159 * 3.21682 * 13 11 10 15 15 Si 1.86805 * 120.00085 * 183.21892 * 13 11 10 16 16 H 1.48504 * 109.47272 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47033 * 300.00047 * 15 13 11 18 18 H 1.48504 * 109.46991 * 60.00177 * 15 13 11 19 19 C 1.54264 * 110.03035 * 64.28711 * 10 9 7 20 20 C 1.54965 * 104.16038 * 95.75792 * 19 10 9 21 21 C 1.54887 * 102.77640 * 37.88388 * 20 19 10 22 22 C 1.53874 * 110.03268 * 181.50704 * 10 9 7 23 23 C 1.47021 * 125.64435 * 179.97438 * 4 2 1 24 24 H 1.09002 * 109.47116 * 269.99910 * 1 2 3 25 25 H 1.09005 * 109.47292 * 29.99988 * 1 2 3 26 26 H 1.09002 * 109.47634 * 149.99569 * 1 2 3 27 27 H 1.08996 * 110.37175 * 36.98419 * 5 4 2 28 28 H 1.09002 * 110.45846 * 274.70431 * 5 4 2 29 29 H 1.09003 * 111.00126 * 278.92855 * 6 5 4 30 30 H 1.09003 * 111.03864 * 155.09738 * 6 5 4 31 31 H 1.00902 * 111.00578 * 338.20697 * 9 7 6 32 32 H 0.97000 * 119.99901 * 356.07900 * 14 13 11 33 33 H 1.08999 * 110.49019 * 214.40073 * 19 10 9 34 34 H 1.08997 * 110.49084 * 337.04888 * 19 10 9 35 35 H 1.09007 * 110.72109 * 279.57283 * 20 19 10 36 36 H 1.08992 * 110.92576 * 156.29455 * 20 19 10 37 37 H 1.08997 * 110.49035 * 203.40440 * 21 20 19 38 38 H 1.09001 * 110.48311 * 80.76759 * 21 20 19 39 39 H 1.09000 * 110.03229 * 359.95148 * 22 10 9 40 40 H 1.08994 * 110.03091 * 121.38489 * 22 10 9 41 41 H 1.09000 * 109.88018 * 61.69560 * 23 4 2 42 42 H 1.08995 * 109.88608 * 300.52305 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.5728 -2.5103 0.0005 6 6 2.6542 -3.4350 -0.6121 7 6 3.9548 -2.8233 -0.0276 8 1 4.1400 -3.2001 0.9783 9 7 5.1000 -3.1025 -0.9042 10 6 6.3272 -3.2985 -0.1207 11 6 6.5928 -2.0860 0.7337 12 1 6.6077 -2.1763 1.8098 13 6 6.8169 -0.8611 0.1416 14 7 6.7364 -0.7378 -1.1652 15 14 7.2350 0.6233 1.1958 16 1 7.4283 1.8104 0.3247 17 1 6.1253 0.8827 2.1478 18 1 8.4846 0.3568 1.9527 19 6 6.1920 -4.5520 0.7682 20 6 6.8647 -5.6771 -0.0581 21 6 8.0665 -4.9505 -0.7113 22 6 7.5182 -3.5517 -1.0614 23 6 3.6439 -1.3120 0.0001 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 0.6731 -2.5195 -0.6146 28 1 1.3389 -2.8227 1.0183 29 1 2.6488 -3.3747 -1.7004 30 1 2.5228 -4.4647 -0.2793 31 1 4.9172 -3.8996 -1.4952 32 1 6.5757 -1.5192 -1.7171 33 1 6.7156 -4.4078 1.7132 34 1 5.1415 -4.7832 0.9445 35 1 6.1830 -6.0571 -0.8191 36 1 7.2069 -6.4843 0.5895 37 1 8.3835 -5.4729 -1.6139 38 1 8.8934 -4.8705 -0.0056 39 1 7.1856 -3.5301 -2.0992 40 1 8.2884 -2.7976 -0.8999 41 1 4.0609 -0.8642 0.9021 42 1 4.0637 -0.8310 -0.8834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169531482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:46 Heat of formation + Delta-G solvation = -37.182563 kcal Electronic energy + Delta-G solvation = -21925.030267 eV Core-core repulsion = 18904.432892 eV Total energy + Delta-G solvation = -3020.597375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58287 -38.26952 -36.62424 -33.23807 -32.19549 -30.22887 -29.37193 -27.75184 -27.47662 -25.85515 -23.47280 -22.81228 -20.56387 -19.38571 -18.99343 -18.59979 -16.80364 -16.55349 -15.97357 -15.03978 -14.83628 -14.41120 -14.13135 -13.60572 -13.38797 -12.97034 -12.93981 -12.60575 -12.42356 -12.32453 -12.08132 -11.91105 -11.53377 -11.43860 -10.86457 -10.75109 -10.53436 -10.43774 -10.22768 -10.10015 -10.01800 -9.95476 -9.73832 -9.71956 -9.42020 -8.41108 -8.18859 -8.07815 -7.24851 -6.06317 -3.91899 3.05346 3.47669 3.53217 3.58897 3.74492 4.66336 4.84136 4.87403 5.01938 5.23123 5.37739 5.40309 5.47660 5.52383 5.57075 5.58765 5.62818 5.73706 5.92819 5.95133 5.98618 6.23963 6.25250 6.30246 6.45306 6.49777 6.50497 6.59830 6.69592 6.74876 6.85768 7.01797 7.07841 7.11159 7.17407 7.49768 7.98365 8.03022 8.38875 8.60661 8.62648 8.76638 9.15192 9.88346 11.30504 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.008372 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.129691 B = 3343.495300 C = 4575.184700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.516 3.484 3 O -0.547 6.547 4 N -0.619 5.619 5 C 0.104 3.896 6 C -0.149 4.149 7 C 0.108 3.892 8 H 0.061 0.939 9 N -0.661 5.661 10 C 0.228 3.772 11 C -0.601 4.601 12 H 0.042 0.958 13 C 0.046 3.954 14 N -0.886 5.886 15 Si 1.046 2.954 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.292 1.292 19 C -0.142 4.142 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.102 4.102 23 C 0.126 3.874 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.306 0.694 32 H 0.292 0.708 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.375 -8.260 1.067 12.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.304 3.696 3 O -0.425 6.425 4 N -0.354 5.354 5 C -0.020 4.020 6 C -0.187 4.187 7 C -0.003 4.003 8 H 0.079 0.921 9 N -0.291 5.291 10 C 0.140 3.860 11 C -0.639 4.639 12 H 0.060 0.940 13 C -0.165 4.165 14 N -0.521 5.521 15 Si 0.876 3.124 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.219 1.219 19 C -0.181 4.181 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.141 4.141 23 C 0.005 3.995 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.641 -5.316 0.838 10.180 hybrid contribution -0.528 -2.637 0.596 2.754 sum -9.169 -7.953 1.434 12.222 Atomic orbital electron populations 1.21877 0.92472 1.04262 1.04149 1.20352 0.89943 0.82529 0.76772 1.90739 1.70701 1.30679 1.50332 1.48781 1.09197 1.05067 1.72399 1.22209 0.96517 0.82982 1.00265 1.23172 0.96022 0.98173 1.01365 1.22043 0.88443 0.93631 0.96193 0.92070 1.61082 1.02463 1.42557 1.22963 1.19352 0.85678 0.92123 0.88893 1.21674 1.55585 0.94092 0.92598 0.93959 1.25332 0.93759 0.99740 0.97638 1.70589 1.41546 1.35390 1.04544 0.83892 0.76234 0.76872 0.75425 1.20851 1.21636 1.21871 1.23108 0.98199 0.96899 0.99903 1.22479 0.97674 0.97412 0.98645 1.22376 0.97403 0.97476 0.98877 1.22280 0.99151 0.94334 0.98326 1.22148 0.76274 0.97225 1.03897 0.89368 0.89336 0.90567 0.91194 0.91791 0.90347 0.90835 0.87605 0.89405 0.92152 0.93738 0.92917 0.93335 0.93468 0.92548 0.93554 0.91262 0.91521 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.90 36.00 0.36 -1.65 16 2 C 0.52 9.51 7.96 -10.99 -0.09 9.42 16 3 O -0.55 -12.95 17.43 5.56 0.10 -12.86 16 4 N -0.62 -11.21 3.33 -170.52 -0.57 -11.78 16 5 C 0.10 1.38 6.67 -2.53 -0.02 1.36 16 6 C -0.15 -2.12 6.38 -24.58 -0.16 -2.27 16 7 C 0.11 2.06 2.26 -65.88 -0.15 1.91 16 8 H 0.06 1.24 6.11 -51.93 -0.32 0.92 16 9 N -0.66 -13.61 4.55 -91.19 -0.41 -14.03 16 10 C 0.23 5.01 0.35 -131.64 -0.05 4.96 16 11 C -0.60 -15.52 6.26 -34.44 -0.22 -15.73 16 12 H 0.04 1.14 7.57 -52.48 -0.40 0.74 16 13 C 0.05 1.25 4.05 -17.82 -0.07 1.18 16 14 N -0.89 -25.30 12.87 55.43 0.71 -24.59 16 15 Si 1.05 25.86 29.90 -169.99 -5.08 20.77 16 16 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.14 -2.73 5.54 -25.03 -0.14 -2.87 16 20 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 21 C -0.12 -2.21 6.83 -25.07 -0.17 -2.38 16 22 C -0.10 -2.21 4.61 -25.61 -0.12 -2.33 16 23 C 0.13 2.78 5.23 -3.06 -0.02 2.77 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 0.72 6.52 -51.93 -0.34 0.38 16 27 H 0.07 0.73 6.75 -51.93 -0.35 0.38 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.31 5.70 8.31 -39.29 -0.33 5.37 16 32 H 0.29 8.16 5.13 -40.82 -0.21 7.95 16 33 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 34 H 0.04 0.81 6.41 -51.93 -0.33 0.47 16 35 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.00 7.64 -51.93 -0.40 0.61 16 40 H 0.07 1.71 7.10 -51.93 -0.37 1.34 16 41 H 0.07 1.68 7.83 -51.93 -0.41 1.27 16 42 H 0.09 2.32 7.77 -51.93 -0.40 1.92 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -30.92 320.43 -8.28 -39.19 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.85 Total: 6.33 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.00 Total: -7.88 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.27 Total: -50.39 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.10 Total: -12.86 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.92 -8.28 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169531482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.010 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds