Wall clock time and date at job start Mon Mar 30 2020 00:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21276 * 120.00374 * 2 1 4 4 N 1.34778 * 119.99371 * 179.97438 * 2 1 3 5 5 C 1.47019 * 125.65277 * 359.97438 * 4 2 1 6 6 C 1.54321 * 107.27531 * 178.97403 * 5 4 2 7 7 C 1.55157 * 103.10033 * 337.71659 * 6 5 4 8 8 H 1.09001 * 111.00741 * 277.51995 * 7 6 5 9 9 N 1.46895 * 111.00422 * 153.66253 * 7 6 5 10 10 C 1.46845 * 111.00421 * 299.21284 * 9 7 6 11 11 C 1.53031 * 109.52734 * 174.15785 * 10 9 7 12 12 C 1.53120 * 109.27827 * 59.18103 * 11 10 9 13 13 C 1.50704 * 109.52749 * 182.43899 * 12 11 10 14 14 H 1.08002 * 119.99927 * 119.67759 * 13 12 11 15 15 C 1.37875 * 119.99779 * 299.68854 * 13 12 11 16 16 N 1.31509 * 120.00168 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99772 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47160 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47315 * 119.99711 * 17 15 13 20 20 H 1.48500 * 109.47065 * 239.99574 * 17 15 13 21 21 C 1.53120 * 109.16134 * 302.34650 * 12 11 10 22 22 C 1.46847 * 111.00159 * 175.00253 * 9 7 6 23 23 C 1.47431 * 125.64579 * 180.02562 * 4 2 1 24 24 H 1.08996 * 109.47494 * 240.01083 * 1 2 3 25 25 H 1.09007 * 109.46601 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47050 * 120.00179 * 1 2 3 27 27 H 1.09001 * 109.88251 * 59.55144 * 5 4 2 28 28 H 1.09004 * 109.88394 * 298.39057 * 5 4 2 29 29 H 1.09002 * 110.72109 * 96.17040 * 6 5 4 30 30 H 1.09003 * 110.72356 * 219.26865 * 6 5 4 31 31 H 1.09006 * 109.46462 * 294.17760 * 10 9 7 32 32 H 1.09003 * 109.46083 * 54.14121 * 10 9 7 33 33 H 1.08997 * 109.50822 * 299.24042 * 11 10 9 34 34 H 1.09006 * 109.50883 * 179.12012 * 11 10 9 35 35 H 1.09006 * 109.57611 * 62.28101 * 12 11 10 36 36 H 0.97002 * 119.99969 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.50151 * 297.71455 * 21 12 11 38 38 H 1.08998 * 109.50413 * 177.59566 * 21 12 11 39 39 H 1.09004 * 109.45951 * 305.85526 * 22 9 7 40 40 H 1.08995 * 109.46375 * 65.83236 * 22 9 7 41 41 H 1.08999 * 110.36190 * 322.93058 * 23 4 2 42 42 H 1.08998 * 110.36491 * 85.14737 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.5746 -2.5067 0.0017 6 6 2.7278 -3.5317 -0.0245 7 6 3.9099 -2.7163 -0.6119 8 1 3.8594 -2.6834 -1.7002 9 7 5.1988 -3.2594 -0.1628 10 6 5.3135 -3.2014 1.3000 11 6 6.5991 -3.9049 1.7406 12 6 7.8012 -3.2164 1.0881 13 6 9.0657 -3.9416 1.4705 14 1 9.6883 -4.3815 0.7055 15 6 9.4276 -4.0436 2.7970 16 7 8.6697 -3.5076 3.7285 17 14 10.9947 -4.9431 3.2710 18 1 11.6633 -5.4516 2.0464 19 1 11.9055 -4.0099 3.9816 20 1 10.6608 -6.0832 4.1619 21 6 7.6334 -3.2479 -0.4336 22 6 6.3177 -2.5635 -0.8111 23 6 3.6480 -1.3125 0.0011 24 1 -0.3634 -0.5136 0.8900 25 1 -0.3633 1.0278 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.9481 -2.6308 -0.8817 28 1 0.9780 -2.6428 0.9038 29 1 2.9602 -3.8766 0.9831 30 1 2.4810 -4.3736 -0.6714 31 1 5.3409 -2.1601 1.6212 32 1 4.4547 -3.6980 1.7515 33 1 6.5665 -4.9497 1.4319 34 1 6.6918 -3.8480 2.8252 35 1 7.8579 -2.1819 1.4270 36 1 8.9245 -3.5791 4.6617 37 1 7.6169 -4.2824 -0.7765 38 1 8.4650 -2.7217 -0.9023 39 1 6.1883 -2.5969 -1.8929 40 1 6.3405 -1.5253 -0.4800 41 1 4.1059 -0.5386 -0.6148 42 1 4.0335 -1.2636 1.0195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169553147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:04 Heat of formation + Delta-G solvation = -34.391893 kcal Electronic energy + Delta-G solvation = -21055.617008 eV Core-core repulsion = 18035.140646 eV Total energy + Delta-G solvation = -3020.476362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28219 -38.61614 -36.65755 -33.82897 -31.91765 -30.40264 -30.03412 -29.75348 -27.64072 -25.38472 -23.53088 -22.53892 -21.88585 -19.99750 -19.47688 -18.34656 -17.10759 -16.68102 -16.30750 -15.42236 -15.11125 -14.53214 -14.41490 -14.03111 -13.82613 -13.26998 -13.10022 -12.93188 -12.67575 -12.56970 -12.38585 -12.29489 -12.07194 -11.84796 -11.40117 -11.12154 -10.93740 -10.74117 -10.70683 -10.39624 -10.20434 -9.98112 -9.95384 -9.43688 -8.97556 -8.77799 -8.69204 -8.29520 -7.78691 -5.97025 -4.02176 2.54534 2.90148 3.30788 3.39056 3.43053 4.15862 4.40737 4.46033 4.62451 4.81601 4.90571 5.05678 5.11901 5.17351 5.23342 5.33460 5.40793 5.60256 5.64618 5.67861 5.79192 5.89552 5.94410 6.00341 6.13068 6.17077 6.22967 6.29614 6.60503 6.62354 6.84318 7.06178 7.12489 7.40390 7.43520 7.56299 7.62522 7.80989 8.04328 8.07279 8.14846 8.48443 9.01739 9.62418 11.09243 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.004109 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.392129 B = 6811.895823 C = 6918.335262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.521 3.479 3 O -0.549 6.549 4 N -0.616 5.616 5 C 0.102 3.898 6 C -0.129 4.129 7 C 0.074 3.926 8 H 0.092 0.908 9 N -0.518 5.518 10 C 0.048 3.952 11 C -0.103 4.103 12 C 0.046 3.954 13 C -0.509 4.509 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.106 4.106 22 C 0.058 3.942 23 C 0.066 3.934 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.021 0.979 36 H 0.258 0.742 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.471 0.602 -7.503 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.311 3.689 3 O -0.427 6.427 4 N -0.351 5.351 5 C -0.021 4.021 6 C -0.167 4.167 7 C -0.036 4.036 8 H 0.110 0.890 9 N -0.241 5.241 10 C -0.078 4.078 11 C -0.142 4.142 12 C 0.028 3.972 13 C -0.548 4.548 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.144 4.144 22 C -0.070 4.070 23 C -0.058 4.058 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.159 0.756 -7.448 17.809 hybrid contribution 0.733 0.335 0.628 1.022 sum -15.426 1.090 -6.820 16.902 Atomic orbital electron populations 1.21885 0.91548 1.05226 1.04076 1.20504 0.90347 0.82138 0.75938 1.90731 1.70889 1.30733 1.50369 1.48494 1.07677 1.05811 1.73165 1.22096 0.96668 0.81817 1.01551 1.22782 0.93218 0.97249 1.03424 1.23005 0.90791 0.90385 0.99437 0.89022 1.62195 0.99914 1.53682 1.08295 1.22444 1.00583 0.99050 0.85760 1.21666 0.91310 0.97898 1.03291 1.18701 0.93609 0.96239 0.88665 1.21243 1.06739 1.34762 0.92016 0.92697 1.24966 0.96762 0.95593 0.96704 1.69882 1.37632 1.45316 1.00306 0.86583 0.83670 0.79542 0.78468 1.19835 1.21156 1.21099 1.21683 0.93003 0.99565 1.00150 1.22161 0.92034 0.95505 0.97272 1.23212 0.80287 0.99687 1.02620 0.89502 0.89094 0.89553 0.91323 0.91287 0.89455 0.89511 0.95317 0.92176 0.93759 0.88923 0.96117 0.93166 0.92409 0.93082 0.92290 0.95466 0.90766 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.51 36.01 0.34 -1.01 16 2 C 0.52 6.96 7.96 -10.98 -0.09 6.88 16 3 O -0.55 -9.95 17.34 5.56 0.10 -9.85 16 4 N -0.62 -7.72 3.33 -170.20 -0.57 -8.29 16 5 C 0.10 0.92 6.49 -3.07 -0.02 0.90 16 6 C -0.13 -1.36 6.45 -24.90 -0.16 -1.52 16 7 C 0.07 0.99 3.13 -65.30 -0.20 0.78 16 8 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 9 N -0.52 -8.56 4.69 -223.81 -1.05 -9.61 16 10 C 0.05 0.90 4.62 -3.84 -0.02 0.88 16 11 C -0.10 -2.37 5.12 -26.65 -0.14 -2.50 16 12 C 0.05 1.14 2.16 -91.65 -0.20 0.94 16 13 C -0.51 -13.88 8.56 -34.44 -0.29 -14.18 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 16 N -0.89 -25.29 11.37 55.43 0.63 -24.66 16 17 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 C -0.11 -2.18 5.32 -26.65 -0.14 -2.33 16 22 C 0.06 1.01 5.26 -3.83 -0.02 0.99 16 23 C 0.07 0.96 5.71 -2.26 -0.01 0.95 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.01 5.82 -51.93 -0.30 0.71 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.56 6.22 -51.93 -0.32 0.24 16 32 H 0.06 1.00 5.86 -51.93 -0.30 0.70 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 41 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 42 H 0.08 1.28 5.62 -51.93 -0.29 0.99 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -31.06 322.30 -9.07 -40.13 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.97 Total: -1.13 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.05 Total: -7.66 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.99 Total: -42.55 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.10 Total: -9.85 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.06 -9.07 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169553147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.734 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds