Wall clock time and date at job start Mon Mar 30 2020 00:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21276 * 120.00374 * 2 1 4 4 N 1.34778 * 119.99371 * 179.97438 * 2 1 3 5 5 C 1.47019 * 125.65277 * 359.97438 * 4 2 1 6 6 C 1.54321 * 107.27531 * 178.97403 * 5 4 2 7 7 C 1.55157 * 103.10033 * 337.71659 * 6 5 4 8 8 H 1.09001 * 111.00741 * 277.51995 * 7 6 5 9 9 N 1.46895 * 111.00422 * 153.66253 * 7 6 5 10 10 C 1.46845 * 111.00421 * 299.21284 * 9 7 6 11 11 C 1.53031 * 109.52734 * 174.15785 * 10 9 7 12 12 C 1.53120 * 109.27827 * 59.18103 * 11 10 9 13 13 C 1.50704 * 109.52749 * 182.43899 * 12 11 10 14 14 H 1.08002 * 119.99927 * 119.67759 * 13 12 11 15 15 C 1.37875 * 119.99779 * 299.68854 * 13 12 11 16 16 N 1.31509 * 120.00168 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99772 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47160 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47315 * 119.99711 * 17 15 13 20 20 H 1.48500 * 109.47065 * 239.99574 * 17 15 13 21 21 C 1.53120 * 109.16134 * 302.34650 * 12 11 10 22 22 C 1.46847 * 111.00159 * 175.00253 * 9 7 6 23 23 C 1.47431 * 125.64579 * 180.02562 * 4 2 1 24 24 H 1.08996 * 109.47494 * 240.01083 * 1 2 3 25 25 H 1.09007 * 109.46601 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47050 * 120.00179 * 1 2 3 27 27 H 1.09001 * 109.88251 * 59.55144 * 5 4 2 28 28 H 1.09004 * 109.88394 * 298.39057 * 5 4 2 29 29 H 1.09002 * 110.72109 * 96.17040 * 6 5 4 30 30 H 1.09003 * 110.72356 * 219.26865 * 6 5 4 31 31 H 1.09006 * 109.46462 * 294.17760 * 10 9 7 32 32 H 1.09003 * 109.46083 * 54.14121 * 10 9 7 33 33 H 1.08997 * 109.50822 * 299.24042 * 11 10 9 34 34 H 1.09006 * 109.50883 * 179.12012 * 11 10 9 35 35 H 1.09006 * 109.57611 * 62.28101 * 12 11 10 36 36 H 0.97002 * 119.99969 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.50151 * 297.71455 * 21 12 11 38 38 H 1.08998 * 109.50413 * 177.59566 * 21 12 11 39 39 H 1.09004 * 109.45951 * 305.85526 * 22 9 7 40 40 H 1.08995 * 109.46375 * 65.83236 * 22 9 7 41 41 H 1.08999 * 110.36190 * 322.93058 * 23 4 2 42 42 H 1.08998 * 110.36491 * 85.14737 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.5746 -2.5067 0.0017 6 6 2.7278 -3.5317 -0.0245 7 6 3.9099 -2.7163 -0.6119 8 1 3.8594 -2.6834 -1.7002 9 7 5.1988 -3.2594 -0.1628 10 6 5.3135 -3.2014 1.3000 11 6 6.5991 -3.9049 1.7406 12 6 7.8012 -3.2164 1.0881 13 6 9.0657 -3.9416 1.4705 14 1 9.6883 -4.3815 0.7055 15 6 9.4276 -4.0436 2.7970 16 7 8.6697 -3.5076 3.7285 17 14 10.9947 -4.9431 3.2710 18 1 11.6633 -5.4516 2.0464 19 1 11.9055 -4.0099 3.9816 20 1 10.6608 -6.0832 4.1619 21 6 7.6334 -3.2479 -0.4336 22 6 6.3177 -2.5635 -0.8111 23 6 3.6480 -1.3125 0.0011 24 1 -0.3634 -0.5136 0.8900 25 1 -0.3633 1.0278 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.9481 -2.6308 -0.8817 28 1 0.9780 -2.6428 0.9038 29 1 2.9602 -3.8766 0.9831 30 1 2.4810 -4.3736 -0.6714 31 1 5.3409 -2.1601 1.6212 32 1 4.4547 -3.6980 1.7515 33 1 6.5665 -4.9497 1.4319 34 1 6.6918 -3.8480 2.8252 35 1 7.8579 -2.1819 1.4270 36 1 8.9245 -3.5791 4.6617 37 1 7.6169 -4.2824 -0.7765 38 1 8.4650 -2.7217 -0.9023 39 1 6.1883 -2.5969 -1.8929 40 1 6.3405 -1.5253 -0.4800 41 1 4.1059 -0.5386 -0.6148 42 1 4.0335 -1.2636 1.0195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169553147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:04 Heat of formation + Delta-G solvation = -55.393470 kcal Electronic energy + Delta-G solvation = -21056.527705 eV Core-core repulsion = 18035.140646 eV Total energy + Delta-G solvation = -3021.387059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36938 -39.92431 -37.96789 -35.52113 -33.52844 -31.70051 -31.49941 -30.72648 -28.86135 -27.11524 -24.70939 -24.08068 -23.39799 -21.34527 -20.48561 -19.90126 -18.47034 -18.07200 -17.69252 -16.66956 -16.45012 -16.14499 -15.74982 -15.25920 -15.02440 -14.73637 -14.50088 -14.37523 -13.87870 -13.74411 -13.68716 -13.27636 -13.18378 -13.03590 -12.88073 -12.67633 -12.53641 -12.46240 -12.03649 -11.96517 -11.85426 -11.58281 -11.34263 -11.03622 -10.81377 -10.61417 -10.37782 -9.81254 -9.16585 -8.08147 -6.21530 1.39906 1.41899 1.53255 1.56393 1.96476 2.43856 2.92881 3.19017 3.48640 3.70349 3.88301 3.95093 4.16044 4.19119 4.31516 4.35241 4.41419 4.47381 4.51411 4.61199 4.63226 4.72397 4.78648 4.81574 4.90897 4.96434 5.02543 5.06605 5.14747 5.20365 5.23150 5.30321 5.37902 5.56449 5.63025 6.00184 6.00672 6.24749 6.29333 6.40633 6.50976 6.90507 7.08658 7.46550 8.96622 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.004109 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.392129 B = 6811.895823 C = 6918.335262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.510 3.490 3 O -0.612 6.612 4 N -0.617 5.617 5 C 0.102 3.898 6 C -0.123 4.123 7 C 0.077 3.923 8 H 0.111 0.889 9 N -0.516 5.516 10 C 0.063 3.937 11 C -0.094 4.094 12 C 0.041 3.959 13 C -0.531 4.531 14 H 0.051 0.949 15 C 0.012 3.988 16 N -0.919 5.919 17 Si 0.953 3.047 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.279 1.279 21 C -0.099 4.099 22 C 0.063 3.937 23 C 0.068 3.932 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.011 0.989 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.059 0.941 35 H -0.018 1.018 36 H 0.259 0.741 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.014 0.986 41 H 0.051 0.949 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.753 -1.001 -8.870 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.302 3.698 3 O -0.494 6.494 4 N -0.350 5.350 5 C -0.020 4.020 6 C -0.161 4.161 7 C -0.033 4.033 8 H 0.128 0.872 9 N -0.239 5.239 10 C -0.064 4.064 11 C -0.132 4.132 12 C 0.023 3.977 13 C -0.569 4.569 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.559 5.559 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.205 1.205 21 C -0.137 4.137 22 C -0.064 4.064 23 C -0.058 4.058 24 H 0.129 0.871 25 H 0.108 0.892 26 H 0.135 0.865 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.029 0.971 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.000 1.000 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.470 -0.886 -8.828 20.491 hybrid contribution 1.457 0.849 1.056 1.990 sum -17.013 -0.036 -7.772 18.705 Atomic orbital electron populations 1.21903 0.86886 1.06089 1.06581 1.21586 0.92491 0.81273 0.74490 1.90702 1.72489 1.32962 1.53253 1.48654 1.06691 1.07362 1.72323 1.22366 0.96277 0.78950 1.04368 1.22806 0.92190 0.98070 1.03006 1.23123 0.89860 0.89893 1.00418 0.87153 1.62156 1.01286 1.53893 1.06563 1.22161 0.99051 0.97583 0.87588 1.21405 0.93053 0.97678 1.01073 1.18687 0.93679 0.93685 0.91665 1.21617 1.07920 1.35096 0.92310 0.93024 1.25743 0.99817 0.96380 0.96721 1.70029 1.39105 1.46222 1.00506 0.85577 0.79888 0.78377 0.78236 1.19132 1.20935 1.20456 1.21537 0.95111 0.99965 0.97048 1.22078 0.90934 0.94316 0.99091 1.22999 0.82151 0.99975 1.00647 0.87089 0.89240 0.86515 0.87805 0.89102 0.90648 0.86887 0.97080 0.89856 0.94469 0.92266 1.00026 0.93156 0.92384 0.93093 0.89084 0.96768 0.93082 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.51 71.24 0.68 -1.30 16 2 C 0.51 12.95 7.96 87.66 0.70 13.65 16 3 O -0.61 -22.69 17.34 -3.02 -0.05 -22.74 16 4 N -0.62 -14.25 3.33 -810.79 -2.70 -16.95 16 5 C 0.10 1.39 6.49 86.73 0.56 1.95 16 6 C -0.12 -2.13 6.45 31.78 0.20 -1.92 16 7 C 0.08 1.87 3.13 46.48 0.15 2.01 16 8 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 9 N -0.52 -16.50 4.69 -862.01 -4.04 -20.55 16 10 C 0.06 2.38 4.62 86.32 0.40 2.78 16 11 C -0.09 -4.44 5.12 30.64 0.16 -4.28 16 12 C 0.04 2.11 2.16 -11.46 -0.02 2.09 16 13 C -0.53 -29.82 8.56 25.60 0.22 -29.60 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.01 0.65 5.31 84.65 0.45 1.10 16 16 N -0.92 -53.88 11.37 21.45 0.24 -53.64 16 17 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 C -0.10 -4.11 5.32 30.65 0.16 -3.95 16 22 C 0.06 2.18 5.26 86.33 0.45 2.64 16 23 C 0.07 1.96 5.71 87.03 0.50 2.46 16 24 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.09 1.20 8.12 -2.38 -0.02 1.18 16 26 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.07 1.52 5.82 -2.39 -0.01 1.50 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.01 0.46 6.22 -2.38 -0.01 0.44 16 32 H 0.08 2.73 5.86 -2.39 -0.01 2.72 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 3.19 6.17 -2.38 -0.01 3.18 16 35 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.09 2.58 8.07 -2.38 -0.02 2.56 16 40 H 0.01 0.52 7.79 -2.39 -0.02 0.50 16 41 H 0.05 1.69 8.04 -2.39 -0.02 1.67 16 42 H 0.05 1.75 5.62 -2.39 -0.01 1.74 16 Total: -1.00 -72.28 322.30 1.07 -71.22 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.99 Total: 8.80 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.60 Total: -12.37 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -6.50 Total: -91.13 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -72.28 1.07 -71.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169553147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.822 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds