Wall clock time and date at job start Mon Mar 30 2020 00:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21271 * 120.00064 * 2 1 4 4 N 1.34777 * 119.99751 * 180.27156 * 2 1 3 5 5 C 1.47025 * 125.65330 * 359.42013 * 4 2 1 6 6 C 1.54323 * 107.26970 * 178.84815 * 5 4 2 7 7 C 1.55156 * 103.02216 * 338.13954 * 6 5 4 8 8 H 1.09003 * 111.00647 * 277.23745 * 7 6 5 9 9 N 1.46905 * 111.00754 * 153.38038 * 7 6 5 10 10 C 1.46847 * 111.00113 * 184.17301 * 9 7 6 11 11 C 1.53036 * 109.52228 * 174.16345 * 10 9 7 12 12 C 1.53111 * 109.27915 * 59.17582 * 11 10 9 13 13 C 1.53122 * 109.16509 * 302.34553 * 12 11 10 14 14 H 1.08999 * 109.50113 * 297.71656 * 13 12 11 15 15 C 1.50691 * 109.50247 * 177.59596 * 13 12 11 16 16 H 1.08002 * 120.00126 * 239.99644 * 15 13 12 17 17 C 1.37876 * 120.00353 * 60.00534 * 15 13 12 18 18 N 1.31521 * 119.99807 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00133 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47038 * 89.99906 * 19 17 15 21 21 H 1.48501 * 109.46904 * 209.99682 * 19 17 15 22 22 H 1.48493 * 109.47156 * 329.99894 * 19 17 15 23 23 C 1.46841 * 110.99725 * 59.95987 * 9 7 6 24 24 C 1.47424 * 125.64685 * 179.72467 * 4 2 1 25 25 H 1.08996 * 109.47117 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47523 * 120.00467 * 1 2 3 27 27 H 1.09005 * 109.47479 * 240.00235 * 1 2 3 28 28 H 1.09006 * 109.87916 * 298.39458 * 5 4 2 29 29 H 1.08999 * 109.88098 * 59.55203 * 5 4 2 30 30 H 1.09001 * 110.85186 * 219.67036 * 6 5 4 31 31 H 1.08998 * 110.51747 * 96.45081 * 6 5 4 32 32 H 1.09009 * 109.45995 * 294.17731 * 10 9 7 33 33 H 1.08999 * 109.46200 * 54.15233 * 10 9 7 34 34 H 1.08998 * 109.49958 * 179.11988 * 11 10 9 35 35 H 1.09001 * 109.50047 * 299.23486 * 11 10 9 36 36 H 1.09003 * 109.52607 * 62.25228 * 12 11 10 37 37 H 1.09006 * 109.52151 * 182.37749 * 12 11 10 38 38 H 0.96997 * 119.99920 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.46938 * 305.85588 * 23 9 7 40 40 H 1.09000 * 109.46272 * 65.82583 * 23 9 7 41 41 H 1.08997 * 110.36901 * 322.92891 * 24 4 2 42 42 H 1.09000 * 110.36648 * 85.25952 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0055 5 6 1.5747 -2.5067 0.0002 6 6 2.7278 -3.5315 -0.0392 7 6 3.9054 -2.7104 -0.6276 8 1 3.8512 -2.6740 -1.7157 9 7 5.1976 -3.2509 -0.1846 10 6 6.3081 -2.4160 -0.6602 11 6 7.6220 -2.9234 -0.0616 12 6 7.8387 -4.3803 -0.4797 13 6 6.6453 -5.2195 -0.0146 14 1 6.5831 -5.1921 1.0733 15 6 6.8226 -6.6438 -0.4735 16 1 6.0899 -7.0964 -1.1252 17 6 7.9201 -7.3695 -0.0613 18 7 8.8126 -6.8183 0.7320 19 14 8.1395 -9.1354 -0.6297 20 1 8.9134 -9.1550 -1.8969 21 1 8.8721 -9.9024 0.4096 22 1 6.8075 -9.7524 -0.8535 23 6 5.3597 -4.6456 -0.6145 24 6 3.6479 -1.3123 -0.0120 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3634 -0.5139 -0.8900 27 1 -0.3634 -0.5138 0.8900 28 1 0.9857 -2.6431 0.9072 29 1 0.9409 -2.6305 -0.8779 30 1 2.4795 -4.3702 -0.6897 31 1 2.9646 -3.8791 0.9664 32 1 6.3609 -2.4669 -1.7478 33 1 6.1438 -1.3834 -0.3525 34 1 8.4479 -2.3132 -0.4271 35 1 7.5751 -2.8598 1.0255 36 1 7.9245 -4.4391 -1.5647 37 1 8.7522 -4.7589 -0.0210 38 1 9.5850 -7.3286 1.0217 39 1 4.5066 -5.2323 -0.2738 40 1 5.4170 -4.6860 -1.7023 41 1 4.1031 -0.5369 -0.6280 42 1 4.0379 -1.2680 1.0049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169553526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:37 Heat of formation + Delta-G solvation = -40.145191 kcal Electronic energy + Delta-G solvation = -20927.068753 eV Core-core repulsion = 17906.342909 eV Total energy + Delta-G solvation = -3020.725844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14996 -38.50608 -36.75405 -33.68575 -32.16511 -30.51327 -30.24708 -29.55400 -27.63405 -25.01029 -23.56169 -22.86333 -21.21328 -20.17860 -19.27209 -18.68929 -17.13727 -16.76333 -16.16180 -15.48672 -15.01685 -14.63884 -14.17349 -13.98956 -13.84578 -13.22805 -13.03546 -12.88650 -12.65984 -12.51562 -12.50515 -12.35245 -12.09956 -11.98097 -11.27574 -11.00534 -10.95600 -10.83667 -10.69121 -10.58551 -10.12729 -9.96635 -9.85413 -9.48510 -9.05838 -8.72997 -8.72294 -8.32221 -7.77380 -5.99129 -4.05672 2.53223 2.88766 3.29222 3.36424 3.38692 4.27757 4.33434 4.46392 4.65448 4.77473 4.96332 5.05652 5.18017 5.25618 5.30571 5.35898 5.44413 5.60932 5.66201 5.74841 5.80541 5.92052 5.99605 6.05152 6.12808 6.19885 6.26584 6.40134 6.48119 6.69707 6.73292 6.93501 7.19211 7.37316 7.42274 7.60144 7.71926 7.76917 8.05467 8.05886 8.15722 8.45574 8.98340 9.58826 11.06720 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037258 B = 0.004150 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.334395 B = 6745.649195 C = 7323.266186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.523 3.477 3 O -0.551 6.551 4 N -0.619 5.619 5 C 0.103 3.897 6 C -0.124 4.124 7 C 0.070 3.930 8 H 0.050 0.950 9 N -0.527 5.527 10 C 0.061 3.939 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.055 3.945 14 H 0.035 0.965 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.068 3.932 24 C 0.114 3.886 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.091 0.909 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.886 8.331 -1.785 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.313 3.687 3 O -0.429 6.429 4 N -0.354 5.354 5 C -0.020 4.020 6 C -0.163 4.163 7 C -0.039 4.039 8 H 0.067 0.933 9 N -0.252 5.252 10 C -0.067 4.067 11 C -0.155 4.155 12 C -0.149 4.149 13 C 0.036 3.964 14 H 0.053 0.947 15 C -0.554 4.554 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.058 4.058 24 C -0.009 4.009 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.091 0.909 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.442 8.929 -1.180 16.180 hybrid contribution 0.162 -1.109 -1.259 1.686 sum -13.279 7.821 -2.439 15.603 Atomic orbital electron populations 1.21885 0.91545 1.05208 1.04152 1.20466 0.90339 0.82044 0.75859 1.90720 1.70912 1.30724 1.50569 1.48539 1.07851 1.05910 1.73080 1.22094 0.96667 0.81720 1.01566 1.22713 0.93003 0.96968 1.03569 1.22699 0.91136 0.93319 0.96789 0.93258 1.62056 0.99489 1.03787 1.59852 1.22075 0.92074 0.95839 0.96737 1.21673 0.94031 0.99037 1.00744 1.21664 1.03576 0.91146 0.98556 1.18663 0.88073 0.92992 0.96626 0.94728 1.21129 1.07463 0.96977 1.29848 0.92874 1.24933 0.95952 0.97977 0.94946 1.69892 1.11872 1.36531 1.34324 0.86634 0.78160 0.85071 0.78339 1.20807 1.21249 1.19975 1.22335 1.01318 0.85403 0.96794 1.22244 0.79704 0.96855 1.02052 0.89095 0.89533 0.89461 0.91110 0.91444 0.89896 0.89032 0.95768 0.92229 0.93442 0.92012 0.95194 0.89076 0.93039 0.91930 0.96293 0.90851 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.51 36.00 0.34 -0.97 16 2 C 0.52 6.71 7.96 -10.99 -0.09 6.62 16 3 O -0.55 -9.47 17.34 5.57 0.10 -9.38 16 4 N -0.62 -7.59 3.33 -170.52 -0.57 -8.16 16 5 C 0.10 0.97 6.49 -3.06 -0.02 0.95 16 6 C -0.12 -1.46 5.23 -24.90 -0.13 -1.59 16 7 C 0.07 1.00 2.72 -65.56 -0.18 0.82 16 8 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 9 N -0.53 -9.14 4.55 -224.12 -1.02 -10.16 16 10 C 0.06 1.04 5.33 -3.83 -0.02 1.02 16 11 C -0.12 -2.25 6.09 -26.66 -0.16 -2.41 16 12 C -0.11 -2.58 5.02 -26.61 -0.13 -2.72 16 13 C 0.06 1.34 2.26 -91.69 -0.21 1.13 16 14 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.52 -13.74 8.56 -34.44 -0.29 -14.04 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -24.93 11.35 55.43 0.63 -24.30 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.07 1.36 4.52 -3.84 -0.02 1.34 16 24 C 0.11 1.59 5.42 -2.53 -0.01 1.58 16 25 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.91 7.97 -51.93 -0.41 0.49 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.06 0.93 6.93 -51.93 -0.36 0.57 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.06 1.20 6.85 -51.93 -0.36 0.85 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 1.09 7.77 -51.93 -0.40 0.68 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -30.29 327.55 -9.28 -39.57 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.31 Total: -1.71 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.02 Total: -6.64 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.96 Total: -42.62 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.10 Total: -9.38 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.29 -9.28 -39.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169553526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.580 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds