Wall clock time and date at job start Mon Mar 30 2020 00:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21271 * 120.00064 * 2 1 4 4 N 1.34777 * 119.99751 * 180.27156 * 2 1 3 5 5 C 1.47025 * 125.65330 * 359.42013 * 4 2 1 6 6 C 1.54323 * 107.26970 * 178.84815 * 5 4 2 7 7 C 1.55156 * 103.02216 * 338.13954 * 6 5 4 8 8 H 1.09003 * 111.00647 * 277.23745 * 7 6 5 9 9 N 1.46905 * 111.00754 * 153.38038 * 7 6 5 10 10 C 1.46847 * 111.00113 * 184.17301 * 9 7 6 11 11 C 1.53036 * 109.52228 * 174.16345 * 10 9 7 12 12 C 1.53111 * 109.27915 * 59.17582 * 11 10 9 13 13 C 1.53122 * 109.16509 * 302.34553 * 12 11 10 14 14 H 1.08999 * 109.50113 * 297.71656 * 13 12 11 15 15 C 1.50691 * 109.50247 * 177.59596 * 13 12 11 16 16 H 1.08002 * 120.00126 * 239.99644 * 15 13 12 17 17 C 1.37876 * 120.00353 * 60.00534 * 15 13 12 18 18 N 1.31521 * 119.99807 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00133 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47038 * 89.99906 * 19 17 15 21 21 H 1.48501 * 109.46904 * 209.99682 * 19 17 15 22 22 H 1.48493 * 109.47156 * 329.99894 * 19 17 15 23 23 C 1.46841 * 110.99725 * 59.95987 * 9 7 6 24 24 C 1.47424 * 125.64685 * 179.72467 * 4 2 1 25 25 H 1.08996 * 109.47117 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47523 * 120.00467 * 1 2 3 27 27 H 1.09005 * 109.47479 * 240.00235 * 1 2 3 28 28 H 1.09006 * 109.87916 * 298.39458 * 5 4 2 29 29 H 1.08999 * 109.88098 * 59.55203 * 5 4 2 30 30 H 1.09001 * 110.85186 * 219.67036 * 6 5 4 31 31 H 1.08998 * 110.51747 * 96.45081 * 6 5 4 32 32 H 1.09009 * 109.45995 * 294.17731 * 10 9 7 33 33 H 1.08999 * 109.46200 * 54.15233 * 10 9 7 34 34 H 1.08998 * 109.49958 * 179.11988 * 11 10 9 35 35 H 1.09001 * 109.50047 * 299.23486 * 11 10 9 36 36 H 1.09003 * 109.52607 * 62.25228 * 12 11 10 37 37 H 1.09006 * 109.52151 * 182.37749 * 12 11 10 38 38 H 0.96997 * 119.99920 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.46938 * 305.85588 * 23 9 7 40 40 H 1.09000 * 109.46272 * 65.82583 * 23 9 7 41 41 H 1.08997 * 110.36901 * 322.92891 * 24 4 2 42 42 H 1.09000 * 110.36648 * 85.25952 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0055 5 6 1.5747 -2.5067 0.0002 6 6 2.7278 -3.5315 -0.0392 7 6 3.9054 -2.7104 -0.6276 8 1 3.8512 -2.6740 -1.7157 9 7 5.1976 -3.2509 -0.1846 10 6 6.3081 -2.4160 -0.6602 11 6 7.6220 -2.9234 -0.0616 12 6 7.8387 -4.3803 -0.4797 13 6 6.6453 -5.2195 -0.0146 14 1 6.5831 -5.1921 1.0733 15 6 6.8226 -6.6438 -0.4735 16 1 6.0899 -7.0964 -1.1252 17 6 7.9201 -7.3695 -0.0613 18 7 8.8126 -6.8183 0.7320 19 14 8.1395 -9.1354 -0.6297 20 1 8.9134 -9.1550 -1.8969 21 1 8.8721 -9.9024 0.4096 22 1 6.8075 -9.7524 -0.8535 23 6 5.3597 -4.6456 -0.6145 24 6 3.6479 -1.3123 -0.0120 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3634 -0.5139 -0.8900 27 1 -0.3634 -0.5138 0.8900 28 1 0.9857 -2.6431 0.9072 29 1 0.9409 -2.6305 -0.8779 30 1 2.4795 -4.3702 -0.6897 31 1 2.9646 -3.8791 0.9664 32 1 6.3609 -2.4669 -1.7478 33 1 6.1438 -1.3834 -0.3525 34 1 8.4479 -2.3132 -0.4271 35 1 7.5751 -2.8598 1.0255 36 1 7.9245 -4.4391 -1.5647 37 1 8.7522 -4.7589 -0.0210 38 1 9.5850 -7.3286 1.0217 39 1 4.5066 -5.2323 -0.2738 40 1 5.4170 -4.6860 -1.7023 41 1 4.1031 -0.5369 -0.6280 42 1 4.0379 -1.2680 1.0049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169553526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:37 Heat of formation + Delta-G solvation = -59.747157 kcal Electronic energy + Delta-G solvation = -20927.918758 eV Core-core repulsion = 17906.342909 eV Total energy + Delta-G solvation = -3021.575849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20049 -39.85200 -38.01760 -35.39527 -33.70931 -31.85452 -31.61507 -30.62080 -28.71953 -26.89387 -24.87441 -24.16843 -22.78280 -21.40578 -20.41143 -20.20541 -18.48325 -18.01125 -17.62913 -16.68792 -16.44928 -16.06386 -15.50590 -15.44433 -14.96877 -14.71125 -14.34906 -14.25663 -14.03011 -13.72867 -13.65981 -13.41000 -13.26390 -12.97452 -12.84510 -12.72909 -12.51127 -12.41871 -11.94772 -11.87826 -11.80996 -11.67387 -11.33915 -11.02745 -10.82604 -10.62863 -10.35733 -9.70803 -9.20263 -8.05819 -6.19857 1.43041 1.44024 1.53758 1.59721 1.95682 2.44685 3.04820 3.21612 3.37741 3.70041 3.90008 4.05422 4.15130 4.24583 4.30218 4.34968 4.47078 4.51084 4.60513 4.62301 4.65535 4.71577 4.80070 4.87890 4.90748 4.98296 5.02495 5.07509 5.09813 5.17198 5.20685 5.29579 5.39268 5.54304 5.65616 5.96010 6.11877 6.21205 6.32250 6.45969 6.53584 6.93371 7.10807 7.48264 8.98752 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037258 B = 0.004150 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.334395 B = 6745.649195 C = 7323.266186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.515 3.485 3 O -0.606 6.606 4 N -0.620 5.620 5 C 0.107 3.893 6 C -0.123 4.123 7 C 0.071 3.929 8 H 0.053 0.947 9 N -0.535 5.535 10 C 0.065 3.935 11 C -0.110 4.110 12 C -0.105 4.105 13 C 0.052 3.948 14 H -0.002 1.002 15 C -0.533 4.533 16 H 0.055 0.945 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.953 3.047 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.085 3.915 24 C 0.118 3.882 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.259 0.741 39 H 0.070 0.930 40 H 0.014 0.986 41 H 0.060 0.940 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.398 8.082 -2.594 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.307 3.693 3 O -0.488 6.488 4 N -0.354 5.354 5 C -0.015 4.015 6 C -0.161 4.161 7 C -0.038 4.038 8 H 0.070 0.930 9 N -0.260 5.260 10 C -0.063 4.063 11 C -0.148 4.148 12 C -0.143 4.143 13 C 0.033 3.967 14 H 0.017 0.983 15 C -0.572 4.572 16 H 0.073 0.927 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.779 3.221 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.042 4.042 24 C -0.005 4.005 25 H 0.110 0.890 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.079 0.921 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.988 8.659 -1.994 18.291 hybrid contribution 0.965 -1.023 -0.980 1.714 sum -15.022 7.636 -2.973 17.112 Atomic orbital electron populations 1.21910 0.87197 1.06128 1.06451 1.21453 0.92312 0.81130 0.74452 1.90695 1.72360 1.32633 1.53128 1.48670 1.07027 1.07170 1.72497 1.22265 0.95876 0.79138 1.04247 1.22723 0.92728 0.97749 1.02854 1.22721 0.90173 0.93921 0.97021 0.92956 1.61958 1.01118 1.02637 1.60246 1.22031 0.90937 0.96667 0.96660 1.21575 0.96260 0.96743 1.00219 1.21478 1.01717 0.93604 0.97510 1.18592 0.90740 0.92818 0.94518 0.98350 1.21522 1.07505 0.98399 1.29745 0.92723 1.25722 0.95769 1.01955 0.95105 1.70043 1.12268 1.37925 1.35365 0.85633 0.78359 0.80333 0.77778 1.20425 1.21159 1.18960 1.21982 0.99260 0.87037 0.95966 1.22025 0.81401 0.96199 1.00897 0.89036 0.86982 0.87034 0.88628 0.88518 0.88712 0.90245 0.95522 0.90191 0.91511 0.93050 0.95980 0.92451 0.93177 0.91120 0.96726 0.92119 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.51 71.24 0.68 -1.21 16 2 C 0.51 12.17 7.96 87.66 0.70 12.87 16 3 O -0.61 -20.66 17.34 -3.00 -0.05 -20.71 16 4 N -0.62 -13.77 3.33 -811.79 -2.70 -16.47 16 5 C 0.11 1.60 6.49 86.73 0.56 2.17 16 6 C -0.12 -2.56 5.23 31.78 0.17 -2.39 16 7 C 0.07 1.90 2.72 46.31 0.13 2.02 16 8 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 9 N -0.53 -18.24 4.55 -862.98 -3.93 -22.17 16 10 C 0.06 2.19 5.33 86.33 0.46 2.65 16 11 C -0.11 -4.27 6.09 30.64 0.19 -4.08 16 12 C -0.10 -5.01 5.02 30.67 0.15 -4.85 16 13 C 0.05 2.59 2.26 -11.49 -0.03 2.56 16 14 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 15 C -0.53 -28.84 8.56 25.60 0.22 -28.62 16 16 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 17 C 0.01 0.72 5.30 84.65 0.45 1.17 16 18 N -0.92 -52.95 11.35 21.45 0.24 -52.71 16 19 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 C 0.08 3.37 4.52 86.33 0.39 3.76 16 24 C 0.12 3.18 5.42 86.86 0.47 3.65 16 25 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 26 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.77 7.97 -2.39 -0.02 1.76 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.03 0.89 8.14 -2.38 -0.02 0.88 16 33 H 0.08 2.40 6.93 -2.39 -0.02 2.38 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 3.12 6.15 -2.38 -0.01 3.11 16 38 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 39 H 0.07 2.66 6.85 -2.39 -0.02 2.64 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 1.77 7.77 -2.39 -0.02 1.75 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -68.29 327.55 1.09 -67.19 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.97 Total: 10.10 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 4.53 Total: -10.30 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -6.39 Total: -91.35 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.29 1.09 -67.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169553526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.448 kcal (2) G-P(sol) polarization free energy of solvation -68.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds