Wall clock time and date at job start Mon Mar 30 2020 00:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47076 * 2 1 4 4 C 1.46907 * 110.99977 * 294.58996 * 3 2 1 5 5 C 1.50703 * 109.46984 * 295.91298 * 4 3 2 6 6 H 1.07998 * 120.00007 * 354.96121 * 5 4 3 7 7 C 1.37872 * 119.99722 * 174.96731 * 5 4 3 8 8 N 1.31518 * 120.00405 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46836 * 59.99435 * 9 7 5 11 11 H 1.48495 * 109.47396 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46646 * 299.99906 * 9 7 5 13 13 C 1.46892 * 110.99967 * 58.54537 * 3 2 1 14 14 H 1.09001 * 109.21323 * 296.66221 * 13 3 2 15 15 C 1.52825 * 109.21651 * 177.33006 * 13 3 2 16 16 C 1.53745 * 109.92067 * 301.21125 * 15 13 3 17 17 N 1.47574 * 106.52912 * 307.23746 * 16 15 13 18 18 C 1.33686 * 127.17899 * 237.92682 * 17 16 15 19 19 O 1.21286 * 125.30841 * 340.67589 * 18 17 16 20 20 C 1.51458 * 109.38747 * 160.70266 * 18 17 16 21 21 C 1.54529 * 104.22247 * 23.16460 * 20 18 17 22 22 C 1.47477 * 121.26899 * 54.03047 * 17 16 15 23 23 H 1.09002 * 110.83888 * 64.85094 * 22 17 16 24 24 C 1.53047 * 107.27064 * 304.42694 * 22 17 16 25 25 H 1.09006 * 109.46792 * 302.32982 * 1 2 3 26 26 H 1.09000 * 109.47714 * 62.32891 * 1 2 3 27 27 H 1.08997 * 109.47068 * 182.33084 * 1 2 3 28 28 H 1.08998 * 109.47073 * 239.99963 * 2 1 3 29 29 H 1.09000 * 109.47366 * 120.00179 * 2 1 3 30 30 H 1.08998 * 109.46811 * 55.91004 * 4 3 2 31 31 H 1.08996 * 109.46757 * 175.91396 * 4 3 2 32 32 H 0.96995 * 120.00238 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.39732 * 61.34893 * 15 13 3 34 34 H 1.09003 * 109.39643 * 181.07391 * 15 13 3 35 35 H 1.08995 * 110.03586 * 66.49121 * 16 15 13 36 36 H 1.09003 * 110.03738 * 187.87902 * 16 15 13 37 37 H 1.08998 * 110.47968 * 264.48237 * 20 18 17 38 38 H 1.09003 * 110.48396 * 141.84535 * 20 18 17 39 39 H 1.09006 * 110.70504 * 97.74549 * 21 20 18 40 40 H 1.09000 * 110.70076 * 220.80080 * 21 20 18 41 41 H 1.08997 * 109.63678 * 174.26230 * 24 22 17 42 42 H 1.09003 * 109.63211 * 294.86711 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6570 2.0716 -1.2471 5 6 2.3482 1.4033 -2.4077 6 1 3.0549 0.6065 -2.2291 7 6 2.0782 1.8094 -3.6973 8 7 1.2173 2.7795 -3.9148 9 14 2.9354 0.9816 -5.1359 10 1 2.6085 -0.4670 -5.1399 11 1 2.4748 1.5961 -6.4068 12 1 4.4042 1.1572 -5.0044 13 6 1.5204 2.1199 1.1698 14 1 0.4335 2.1831 1.1167 15 6 2.1062 3.5313 1.1648 16 6 3.6418 3.4612 1.1925 17 7 4.0022 2.5991 2.3348 18 6 4.7711 2.9220 3.3797 19 8 5.5600 3.8428 3.4115 20 6 4.5040 1.9585 4.5173 21 6 3.9359 0.7000 3.8234 22 6 3.4451 1.2408 2.4744 23 1 3.7851 0.5970 1.6631 24 6 1.9204 1.3699 2.4451 25 1 -0.3633 0.5496 0.8684 26 1 -0.3634 0.4772 -0.9101 27 1 -0.3633 -1.0268 0.0418 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5775 2.0210 -1.3890 31 1 1.9677 3.1148 -1.1910 32 1 1.0277 3.0654 -4.8220 33 1 1.7839 4.0539 0.2642 34 1 1.7527 4.0731 2.0421 35 1 4.0126 3.0260 0.2646 36 1 4.0588 4.4590 1.3295 37 1 3.7715 2.3769 5.2074 38 1 5.4300 1.7201 5.0406 39 1 4.7173 -0.0460 3.6784 40 1 3.1089 0.2832 4.3984 41 1 1.4688 0.3778 2.4434 42 1 1.5832 1.9275 3.3189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172190449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:06 Heat of formation + Delta-G solvation = -26.521154 kcal Electronic energy + Delta-G solvation = -21865.628327 eV Core-core repulsion = 18845.493266 eV Total energy + Delta-G solvation = -3020.135061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67682 -38.22081 -36.13985 -33.75545 -32.73888 -31.28570 -29.88374 -28.52624 -26.87363 -25.56595 -23.77598 -22.44738 -21.77187 -21.02105 -19.43210 -18.04078 -16.41304 -16.11361 -15.67571 -15.58627 -15.28673 -14.88190 -14.28796 -14.10827 -13.70498 -13.21097 -13.11360 -12.97977 -12.39727 -12.31620 -12.14724 -11.95399 -11.92452 -11.62362 -11.35343 -11.05206 -10.99176 -10.83447 -10.74154 -10.64134 -10.30086 -10.18972 -10.04400 -9.60684 -9.49440 -9.18504 -8.47808 -8.27059 -7.19413 -6.05436 -4.06247 2.79193 3.30942 3.34624 3.35875 3.38372 4.39403 4.46182 4.59192 4.75728 4.91329 5.07126 5.18827 5.28057 5.32048 5.44069 5.55133 5.63893 5.67667 5.75164 5.80709 5.86230 5.90330 5.92039 5.99926 6.05813 6.19641 6.25007 6.32393 6.37598 6.45064 6.59650 6.69442 6.85381 6.91140 7.29969 7.40987 7.56755 7.77574 8.07087 8.16878 8.44398 8.52795 9.01553 9.58108 11.05069 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023567 B = 0.005893 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.808800 B = 4750.163658 C = 5186.116901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 N -0.528 5.528 4 C 0.186 3.814 5 C -0.506 4.506 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.080 3.920 14 H 0.037 0.963 15 C -0.128 4.128 16 C 0.139 3.861 17 N -0.605 5.605 18 C 0.516 3.484 19 O -0.547 6.547 20 C -0.155 4.155 21 C -0.130 4.130 22 C 0.139 3.861 23 H 0.099 0.901 24 C -0.121 4.121 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.053 0.947 30 H -0.001 1.001 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -4.695 14.400 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.070 4.070 3 N -0.252 5.252 4 C 0.062 3.938 5 C -0.544 4.544 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.029 4.029 14 H 0.055 0.945 15 C -0.166 4.166 16 C 0.018 3.982 17 N -0.338 5.338 18 C 0.303 3.697 19 O -0.426 6.426 20 C -0.195 4.195 21 C -0.168 4.168 22 C 0.035 3.965 23 H 0.117 0.883 24 C -0.159 4.159 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.017 0.983 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.000 -4.045 14.202 14.801 hybrid contribution -0.739 -0.374 -1.025 1.317 sum 0.261 -4.419 13.178 13.902 Atomic orbital electron populations 1.22375 0.99546 1.00722 1.01968 1.22021 0.92001 0.91622 1.01400 1.62430 1.58330 1.01585 1.02901 1.19823 0.94908 0.94457 0.84655 1.21092 1.24204 1.19004 0.90128 0.92070 1.24954 0.95317 0.95259 0.98910 1.69936 1.34362 1.28381 1.21114 0.86622 0.80014 0.79527 0.81602 1.20375 1.21441 1.20224 1.21490 0.96674 0.93264 0.91463 0.94488 1.22049 0.95566 0.96738 1.02236 1.21729 0.94441 0.93459 0.88542 1.48569 1.47154 1.15832 1.22241 1.20639 0.79764 0.84902 0.84367 1.90691 1.35316 1.33654 1.82897 1.22359 1.03311 0.96171 0.97655 1.22383 1.01636 0.96978 0.95759 1.21621 0.93577 0.83753 0.97551 0.88324 1.22079 0.95232 1.01000 0.97619 0.93689 0.91603 0.93594 0.89958 0.92838 0.98344 0.95084 0.92921 0.89728 0.92544 0.88953 0.90692 0.88329 0.88777 0.90131 0.89628 0.90750 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 9.21 37.15 0.34 -2.71 16 2 C 0.06 0.99 5.24 -3.83 -0.02 0.97 16 3 N -0.53 -9.83 3.16 -228.03 -0.72 -10.55 16 4 C 0.19 4.39 4.30 -4.97 -0.02 4.37 16 5 C -0.51 -13.29 8.31 -34.44 -0.29 -13.58 16 6 H 0.06 1.60 7.20 -52.49 -0.38 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.08 1.27 1.70 -67.67 -0.12 1.15 16 14 H 0.04 0.62 6.40 -51.93 -0.33 0.29 16 15 C -0.13 -2.03 5.16 -26.43 -0.14 -2.17 16 16 C 0.14 2.31 6.66 -3.07 -0.02 2.29 16 17 N -0.60 -9.20 2.94 -163.79 -0.48 -9.68 16 18 C 0.52 8.06 8.03 -11.10 -0.09 7.97 16 19 O -0.55 -10.72 17.80 5.55 0.10 -10.62 16 20 C -0.15 -1.65 6.91 -26.71 -0.18 -1.83 16 21 C -0.13 -1.22 6.70 -25.72 -0.17 -1.40 16 22 C 0.14 1.77 3.21 -67.16 -0.22 1.55 16 23 H 0.10 1.42 7.36 -51.93 -0.38 1.04 16 24 C -0.12 -1.51 4.38 -26.57 -0.12 -1.63 16 25 H 0.04 0.68 6.32 -51.93 -0.33 0.35 16 26 H 0.06 1.28 6.56 -51.93 -0.34 0.94 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.60 6.69 -51.93 -0.35 1.25 16 29 H 0.05 0.77 6.02 -51.93 -0.31 0.46 16 30 H 0.00 -0.03 6.32 -51.93 -0.33 -0.36 16 31 H 0.03 0.78 5.87 -51.93 -0.31 0.48 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.08 1.49 6.25 -51.93 -0.32 1.17 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.75 7.84 -51.93 -0.41 1.34 16 36 H 0.07 1.25 7.97 -51.93 -0.41 0.83 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.64 7.83 -51.93 -0.41 0.23 16 41 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -30.03 315.55 -8.38 -38.41 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.61 Total: 0.16 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.13 Total: -3.55 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.47 Total: -45.25 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.10 Total: -10.62 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.03 -8.38 -38.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172190449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.886 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds